Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000307.1

Orthogroup ID

OG0002654

Physical Location & Seq

Genomic Coordinates Reverse (-)

32918 .. 34340

Gene Structure 1423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

atggaagaagctcttgttcgtatattaacccctaggcgctctactgatatagtgagggacgtgcatgctgccaaggagcttatgttgttgtttttgttggttgcttattggcttcagcagcatcaggtcagtgttatgatggctgcctgtgatacattccgatcaggggctgttgagcaactgcgtactcatgcgcgtagactccagatccctatttttgaaaagggatatgagaaagatcctgctgttgttgctaaggaagcaatccaggaggccacactgagtggttctgatgtggttcttgttgatacagctggtcgaatgcaggataatgaaccattaatgagggcactgtcaaagcttatgtacattaacaatccagatcttgtcttgtttgttggagaggcattggttgggaatgatcctgttgatcagctttcaaagtttaatcaggataatgaaccattaatgagggcactgtcaaagcttatgtacattaacaatccagatcttgtcttgcttgttggagaggcattggttgggaatgatcctgttgatcagctttcaaagtttaatcagaaactggctgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRP-alpha_N SRP54 SRP54_N

Protein Analysis

197

Amino Acids

22.08

Weight (kDa)

5.01

Isoelectric Point (pI)

28.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRP54	PF00448	34 - 152	3.9e-32	SRP54-type protein, GTPase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30600 AT4G30600
fragaria_vesca	FvH4_1g00830 FvH4_2g11040
malus_domestica	MD02G1006600.v1.1 MD15G1151700.v1.1
prunus_persica	Prupe.7G264100_v2.0.a1
pyrus_communis	pycom02g00550 pycom02g00560 pycom15g13570
rosa_chinensis	RchiOBHm_Chr2g0085561 RchiOBHm_Chr7g0224871 RchiOBHm_Chr7g0224891
rosa_laevigata	RLG00000015699
rosa_multiflora	Rmu_co8208878.1_g000001 Rmu_sc0000307.1_g000005 Rmu_sc0013957.1_g000001 Rmu_sc0014614.1_g000004 Rmu_sc0024179.1_g000002 Rmu_ssc0000347.1_g000004
rosa_roxburghii	Rroxscaffold_2G00155270 Rroxscaffold_3G00234310
rosa_rugosa	Rorug01G0461300 Rorug01G0461300 Rorug01G0461300 Rorug02G0380200 Rorug05G0211800 Rorug07G0226700
rosa_samantha	Rh2AG010200 Rh2BG010800 Rh2CG011700 Rh2DG012700 Rh7AG376500 Rh7AG376700 Rh7BG362200 Rh7CG395200 Rh7DG372200 Rh7DG372300
rosa_wichuraiana	Rw2G000910 Rw7G031400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	199
AccII	CGCG	1 cut(s)	196
AclWI	GGATC	4 cut(s)	202, 233, 416, 542
AcuI	CTGAAG	1 cut(s)	98
AdeI	CACNNNGTG	1 cut(s)	284
AfaI	GTAC	3 cut(s)	187, 368, 494
AfiI	CCNNNNNNNGG	1 cut(s)	166
AgsI	TTSAA	3 cut(s)	221, 441, 567
AjiI	CACGTC	1 cut(s)	61
AjnI	CCWGG	1 cut(s)	267
AluBI	AGCT	7 cut(s)	11, 79, 314, 361, 436, 487, 562
AluI	AGCT	7 cut(s)	11, 79, 314, 361, 436, 487, 562
AlwI	GGATC	4 cut(s)	202, 233, 416, 542
AlwNI	CAGNNNCTG	2 cut(s)	170, 583
AoxI	GGCC	1 cut(s)	273
ApeKI	GCWGC	3 cut(s)	68, 118, 143
AseI	ATTAAT	2 cut(s)	341, 467
AspA2I	CCTAGG	1 cut(s)	32
AspLEI	GCGC	2 cut(s)	39, 196
AvrII	CCTAGG	1 cut(s)	32
BaeGI	GKGCMC	2 cut(s)	352, 478
BbvI	GCAGC	3 cut(s)	55, 130, 130
BccI	CCATC	1 cut(s)	133
BciT130I	CCWGG	1 cut(s)	269
BclI	TGATCA	2 cut(s)	430, 556
BfaI	CTAG	1 cut(s)	33
BfoI	RGCGCY	1 cut(s)	40
BglII	AGATCT	2 cut(s)	382, 508
BisI	GCNGC	3 cut(s)	69, 119, 144
BlnI	CCTAGG	1 cut(s)	32
BlsI	GCNGC	3 cut(s)	70, 120, 145
Bme1390I	CCNGG	1 cut(s)	269
BmgBI	CACGTC	1 cut(s)	61
BmrFI	CCNGG	1 cut(s)	269
BmsI	GCATC	1 cut(s)	130
BpmI	CTGGAG	1 cut(s)	188
Bpu10I	CCTNAGC	1 cut(s)	255
BsaJI	CCNNGG	2 cut(s)	32, 72
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
Bse1I	ACTGG	1 cut(s)	588
BseBI	CCWGG	1 cut(s)	269
BseDI	CCNNGG	2 cut(s)	32, 72
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMII	CTCAG	1 cut(s)	272
BseNI	ACTGG	1 cut(s)	588
BseSI	GKGCMC	2 cut(s)	352, 478
BseXI	GCAGC	3 cut(s)	55, 130, 130
Bsh1236I	CGCG	1 cut(s)	196
BshFI	GGCC	1 cut(s)	275
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmFI	GGGAC	1 cut(s)	71
BsmI	GAATGC	1 cut(s)	327
BsnI	GGCC	1 cut(s)	275
Bsp1286I	GDGCHC	2 cut(s)	352, 478
Bsp1407I	TGTACA	2 cut(s)	366, 492
Bsp143I	GATC	9 cut(s)	161, 207, 238, 382, 421, 430, 508, 547, 556
BspANI	GGCC	1 cut(s)	275
BspCNI	CTCAG	1 cut(s)	273
BspFNI	CGCG	1 cut(s)	196
BspPI	GGATC	4 cut(s)	202, 233, 416, 542
BsrGI	TGTACA	2 cut(s)	366, 492
BsrI	ACTGG	1 cut(s)	588
BssECI	CCNNGG	2 cut(s)	32, 72
BssMI	GATC	9 cut(s)	161, 207, 238, 382, 421, 430, 508, 547, 556
BssT1I	CCWWGG	2 cut(s)	32, 72
Bst2UI	CCWGG	1 cut(s)	269
Bst4CI	ACNGT	2 cut(s)	354, 480
BstAUI	TGTACA	2 cut(s)	366, 492
BstC8I	GCNNGC	1 cut(s)	66
BstDEI	CTNAG	2 cut(s)	255, 281
BstFNI	CGCG	1 cut(s)	196
BstH2I	RGCGCY	1 cut(s)	40
BstHHI	GCGC	2 cut(s)	39, 196
BstKTI	GATC	9 cut(s)	164, 210, 241, 385, 424, 433, 511, 550, 559
BstMBI	GATC	9 cut(s)	161, 207, 238, 382, 421, 430, 508, 547, 556
BstMWI	GCNNNNNNNGC	3 cut(s)	118, 251, 260
BstNI	CCWGG	1 cut(s)	269
BstNSI	RCATGY	1 cut(s)	68
BstSCI	CCNGG	1 cut(s)	267
BstSLI	GKGCMC	2 cut(s)	352, 478
BstUI	CGCG	1 cut(s)	196
BstV1I	GCAGC	3 cut(s)	55, 130, 130
BstX2I	RGATCY	4 cut(s)	207, 238, 382, 508
BstYI	RGATCY	4 cut(s)	207, 238, 382, 508
BsuRI	GGCC	1 cut(s)	275
BtrI	CACGTC	1 cut(s)	61
BtsIMutI	CAGTG	4 cut(s)	136, 278, 350, 476
Cac8I	GCNNGC	1 cut(s)	66
CaiI	CAGNNNCTG	2 cut(s)	170, 583
CfoI	GCGC	2 cut(s)	39, 196
Csp6I	GTAC	3 cut(s)	186, 367, 493
CviAII	CATG	2 cut(s)	65, 191
CviQI	GTAC	3 cut(s)	186, 367, 493
DdeI	CTNAG	2 cut(s)	255, 281
DpnI	GATC	9 cut(s)	163, 209, 240, 384, 423, 432, 510, 549, 558
DpnII	GATC	9 cut(s)	161, 207, 238, 382, 421, 430, 508, 547, 556
DraIII	CACNNNGTG	1 cut(s)	284
Eco130I	CCWWGG	2 cut(s)	32, 72
Eco57I	CTGAAG	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	267
EcoT14I	CCWWGG	2 cut(s)	32, 72
ErhI	CCWWGG	2 cut(s)	32, 72
FaeI	CATG	2 cut(s)	68, 194
FaiI	YATR	9 cut(s)	23, 50, 66, 83, 137, 192, 231, 365, 491
FalI	AAGNNNNNCTT	1 cut(s)	29
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	2 cut(s)	64, 190
FbaI	TGATCA	2 cut(s)	430, 556
FblI	GTMKAC	1 cut(s)	199
Fnu4HI	GCNGC	3 cut(s)	69, 119, 144
Fsp4HI	GCNGC	3 cut(s)	69, 119, 144
FspBI	CTAG	1 cut(s)	33
GlaI	GCGC	2 cut(s)	38, 195
GluI	GCNGC	3 cut(s)	69, 119, 144
GsuI	CTGGAG	1 cut(s)	188
HaeII	RGCGCY	1 cut(s)	40
HaeIII	GGCC	1 cut(s)	275
HhaI	GCGC	2 cut(s)	39, 196
Hin1II	CATG	2 cut(s)	68, 194
Hin6I	GCGC	2 cut(s)	37, 194
HinP1I	GCGC	2 cut(s)	37, 194
HindIII	AAGCTT	2 cut(s)	359, 485
HinfI	GANTC	1 cut(s)	201
Hpy166II	GTNNAC	1 cut(s)	200
Hpy188I	TCNGA	3 cut(s)	161, 292, 579
Hpy188III	TCNNGA	4 cut(s)	205, 380, 452, 506
Hpy8I	GTNNAC	1 cut(s)	200
HpyCH4III	ACNGT	2 cut(s)	354, 480
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	2 cut(s)	64, 325
HpyF10VI	GCNNNNNNNGC	3 cut(s)	118, 251, 260
HpyF3I	CTNAG	2 cut(s)	255, 281
HpySE526I	ACGT	1 cut(s)	60
Hsp92II	CATG	2 cut(s)	68, 194
HspAI	GCGC	2 cut(s)	37, 194
Ksp22I	TGATCA	2 cut(s)	430, 556
Kzo9I	GATC	9 cut(s)	161, 207, 238, 382, 421, 430, 508, 547, 556
LmnI	GCTCC	1 cut(s)	76
Lsp1109I	GCAGC	3 cut(s)	55, 130, 130
LweI	GCATC	1 cut(s)	130
MaeI	CTAG	1 cut(s)	33
MaeII	ACGT	1 cut(s)	60
MalI	GATC	9 cut(s)	163, 209, 240, 384, 423, 432, 510, 549, 558
MboI	GATC	9 cut(s)	161, 207, 238, 382, 421, 430, 508, 547, 556
MboII	GAAGA	1 cut(s)	17
MflI	RGATCY	4 cut(s)	207, 238, 382, 508
MhlI	GDGCHC	2 cut(s)	352, 478
MlyI	GAGTC	1 cut(s)	195
MmeI	TCCRAC	2 cut(s)	379, 505
MnlI	CCTC	6 cut(s)	48, 265, 339, 397, 465, 523
MseI	TTAA	7 cut(s)	26, 341, 372, 447, 467, 498, 573
MspA1I	CMGCKG	1 cut(s)	314
MspR9I	CCNGG	1 cut(s)	269
Mva1269I	GAATGC	1 cut(s)	327
MvaI	CCWGG	1 cut(s)	269
MvnI	CGCG	1 cut(s)	196
MwoI	GCNNNNNNNGC	3 cut(s)	118, 251, 260
NdeII	GATC	9 cut(s)	161, 207, 238, 382, 421, 430, 508, 547, 556
NlaIII	CATG	2 cut(s)	68, 194
NspI	RCATGY	1 cut(s)	68
PaeI	GCATGC	1 cut(s)	68
PctI	GAATGC	1 cut(s)	327
PfoI	TCCNGGA	1 cut(s)	267
PkrI	GCNGC	3 cut(s)	70, 120, 145
PleI	GAGTC	1 cut(s)	195
PpsI	GAGTC	1 cut(s)	195
PshBI	ATTAAT	2 cut(s)	341, 467
Psp6I	CCWGG	1 cut(s)	267
PspGI	CCWGG	1 cut(s)	267
PstNI	CAGNNNCTG	2 cut(s)	170, 583
PsuI	RGATCY	4 cut(s)	207, 238, 382, 508
PvuII	CAGCTG	1 cut(s)	314
RsaI	GTAC	3 cut(s)	187, 368, 494
RsaNI	GTAC	3 cut(s)	186, 367, 493
SaqAI	TTAA	7 cut(s)	26, 341, 372, 447, 467, 498, 573
SatI	GCNGC	3 cut(s)	69, 119, 144
Sau3AI	GATC	9 cut(s)	161, 207, 238, 382, 421, 430, 508, 547, 556
SchI	GAGTC	1 cut(s)	195
ScrFI	CCNGG	1 cut(s)	269
SduI	GDGCHC	2 cut(s)	352, 478
SetI	ASST	9 cut(s)	13, 63, 81, 129, 316, 363, 438, 489, 564
SfaNI	GCATC	1 cut(s)	130
SphI	GCATGC	1 cut(s)	68
SspMI	CTAG	1 cut(s)	33
StyD4I	CCNGG	1 cut(s)	267
StyI	CCWWGG	2 cut(s)	32, 72
TaaI	ACNGT	2 cut(s)	354, 480
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	1 cut(s)	319
TatI	WGTACW	2 cut(s)	366, 492
Tru1I	TTAA	7 cut(s)	26, 341, 372, 447, 467, 498, 573
Tru9I	TTAA	7 cut(s)	26, 341, 372, 447, 467, 498, 573
TscAI	CASTG	4 cut(s)	136, 285, 357, 483
TseI	GCWGC	3 cut(s)	68, 118, 143
TspDTI	ATGAA	2 cut(s)	348, 474
TspRI	CASTG	4 cut(s)	136, 285, 357, 483
VspI	ATTAAT	2 cut(s)	341, 467
XceI	RCATGY	1 cut(s)	68
XmaJI	CCTAGG	1 cut(s)	32
XmiI	GTMKAC	1 cut(s)	199
XspI	CTAG	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.