Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000539.1

Orthogroup ID

OG0003898

Physical Location & Seq

Genomic Coordinates Reverse (-)

409465 .. 414047

Gene Structure 4583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

atgtatgtgactggagatgaagaggatgagaaggctcacaaggggtttcacaatgactatacccgcggaatacaattcaagggttggtgcaatgagagggttgttcattcgcttaaagtgggaggagctcggattcttttggtcttggatggtgatcctcctgctcagaggaacaaggttgagaaagttgtgacaatgatggagactgagcttggcagtgggtggattctgcccaagttgtttaaggtgtatctgtttgttttgtccgcaagaattgtaggctgtctggttgccgaacctataacaaaagcacacaaagtcctatcttgtgcagttgatggaagctcaagttctgctagtacagcaacaaagaaaacaaagttaactactctccagtttggggaaatcaaatttcacagggaagtcattagaaaagccccttctgctcctgaaccattgaatgagtgtttcactggtgctatcgtttgtgaaaaggaagcagtacccgctgtctgtggcattagagccatttgggtcactccagctaacagaagaaaacacatagccacccacttattggatgccctgaggaaaagtttctgcatgggatttgtccttgagcactctcagttggcattctctccactaacatcggctggaaacgcattgatccatgacgacctcatatgccgcttcgtcatttcccagcaaaacgaagcagaatcgcgtagagacgatggccaagcgtttatggtcaacaagctccgcaagctcctagtcgaggagctccggcgcgaggttcgccgttgcgacaaaattcggtgggcggcggctagtgaccggaatccggcagtcagtgaccggaatcaggcgatcggttaccggaatccggcgaaagtttgcctgagttttgcggccggtgacctggctcccgcgaagtctcctatgcttggcaaactttgccctttcaattggcgctggcgaagaagctcagttcaactactccgacgaccacctagggtttcggcgagtgcaatgaccttcattcagattcagtttgatttgtcaaaaatagcttcggaggatgtgaaactaagagaaacggcagtctcggaaattcacaatctagccaaagaggctaagttagcgactagcgagagagggcgttatcaagctcccagcctcgctgttctcaatgtctgcaagtctctcgtcatcgacgatgttgccagtggagtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000724 GO:0000725 GO:0000819 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007135 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009553 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009956 GO:0009987 GO:0010154 GO:0016043 GO:0016407 GO:0016740 GO:0016746 GO:0016747 GO:0022402 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034085 GO:0034089 GO:0034641 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045144 GO:0046483 GO:0048229 GO:0048285 GO:0048316 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048589 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051177 GO:0051276 GO:0051321 GO:0051716 GO:0060771 GO:0060772 GO:0061458 GO:0061983 GO:0070192 GO:0071704 GO:0071840 GO:0080186 GO:0090304 GO:0090567 GO:0098813 GO:0099402 GO:0140013 GO:0140014 GO:1901360 GO:1903046 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_13 zf-C2H2_3

Protein Analysis

413

Amino Acids

45.83

Weight (kDa)

9.43

Isoelectric Point (pI)

47.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_13	PF13880	168 - 225	7.1e-21	ESCO1/2 acetyl-transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31400 AT4G31400
fragaria_vesca	FvH4_6g20270
malus_domestica	MD10G1054000.v1.1 MD12G1039800.v1.1 MD14G1038400.v1.1
prunus_persica	Prupe.7G095100_v2.0.a1
pyrus_communis	pycom01g00980 pycom12g03380
rosa_chinensis	RchiOBHm_Chr1g0331051 RchiOBHm_Chr3g0475861
rosa_laevigata	RLG00000001160 RLG00000023805 RLG00000029757
rosa_multiflora	Rmu_sc0000539.1_g000091 Rmu_sc0000539.1_g000092 Rmu_sc0002515.1_g000002
rosa_roxburghii	Rroxscaffold_3G00226030 Rroxscaffold_4G00319510 Rroxscaffold_6G00405780
rosa_rugosa	Rorug01G0093800 Rorug03G0151800 Rorug07G0290800
rosa_samantha	Rh1AG113600 Rh1CG110400 Rh1DG119200 Rh3AG201800 Rh3BG232300 Rh3CG226900 Rh3DG227400 Rh7BG417600 Rh7CG466100
rosa_wichuraiana	Rw1G009260 Rw3G018370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	577
AccII	CGCG	4 cut(s)	66, 727, 795, 935
AclWI	GGATC	2 cut(s)	149, 664
AcoI	YGGCCR	2 cut(s)	739, 915
AcsI	RAATTY	3 cut(s)	410, 816, 1116
AfaI	GTAC	2 cut(s)	361, 504
AfiI	CCNNNNNNNGG	8 cut(s)	400, 577, 781, 796, 847, 868, 889, 950
AgsI	TTSAA	4 cut(s)	79, 460, 970, 998
AjnI	CCWGG	1 cut(s)	924
Alw21I	GWGCWC	3 cut(s)	130, 624, 789
Alw26I	GTCTC	5 cut(s)	197, 726, 945, 1114, 1212
AlwI	GGATC	2 cut(s)	149, 664
AoxI	GGCC	2 cut(s)	739, 915
ApoI	RAATTY	3 cut(s)	410, 816, 1116
Asp700I	GAANNNNTTC	1 cut(s)	596
AspA2I	CCTAGG	1 cut(s)	1016
AspLEI	GCGC	2 cut(s)	795, 978
AsuHPI	GGTGA	2 cut(s)	164, 932
AvrII	CCTAGG	1 cut(s)	1016
AxyI	CCTNAGG	1 cut(s)	587
BalI	TGGCCA	1 cut(s)	741
BanII	GRGCYC	2 cut(s)	130, 789
Bbv12I	GWGCWC	3 cut(s)	130, 624, 789
BccI	CCATC	4 cut(s)	143, 193, 332, 731
BceAI	ACGGC	2 cut(s)	789, 1119
BcgI	CGANNNNNNTGC	4 cut(s)	1192, 1208, 1226, 1242
BciT130I	CCWGG	1 cut(s)	926
BcoDI	GTCTC	5 cut(s)	197, 726, 945, 1114, 1212
BfaI	CTAG	6 cut(s)	357, 776, 834, 1017, 1127, 1152
BfoI	RGCGCY	1 cut(s)	979
BglI	GCCNNNNNGGC	1 cut(s)	1136
BisI	GCNGC	4 cut(s)	691, 828, 831, 915
BlnI	CCTAGG	1 cut(s)	1016
BlsI	GCNGC	4 cut(s)	692, 829, 832, 916
Bme1390I	CCNGG	1 cut(s)	926
BmiI	GGNNCC	1 cut(s)	930
BmrFI	CCNGG	1 cut(s)	926
BmsI	GCATC	1 cut(s)	571
BpmI	CTGGAG	3 cut(s)	33, 377, 525
BpuEI	CTTGAG	2 cut(s)	331, 638
BsaBI	GATNNNNATC	1 cut(s)	153
BsaJI	CCNNGG	2 cut(s)	64, 1016
BsaWI	WCCGGW	3 cut(s)	840, 861, 882
Bsc4I	CCNNNNNNNGG	8 cut(s)	400, 577, 781, 796, 847, 868, 889, 950
Bse118I	RCCGGY	1 cut(s)	917
Bse1I	ACTGG	4 cut(s)	16, 394, 478, 1230
Bse21I	CCTNAGG	1 cut(s)	587
Bse3DI	GCAATG	2 cut(s)	97, 1041
Bse8I	GATNNNNATC	1 cut(s)	153
BseBI	CCWGG	1 cut(s)	926
BseDI	CCNNGG	2 cut(s)	64, 1016
BseGI	GGATG	4 cut(s)	31, 154, 586, 1090
BseJI	GATNNNNATC	1 cut(s)	153
BseLI	CCNNNNNNNGG	8 cut(s)	400, 577, 781, 796, 847, 868, 889, 950
BseMI	GCAATG	2 cut(s)	97, 1041
BseMII	CTCAG	6 cut(s)	179, 198, 578, 641, 896, 1005
BseNI	ACTGG	4 cut(s)	16, 394, 478, 1230
BseRI	GAGGAG	2 cut(s)	138, 797
BseX3I	CGGCCG	1 cut(s)	915
BseYI	CCCAGC	2 cut(s)	705, 1178
BsgI	GTGCAG	1 cut(s)	351
Bsh1236I	CGCG	4 cut(s)	66, 727, 795, 935
Bsh1285I	CGRYCG	2 cut(s)	876, 918
BshFI	GGCC	2 cut(s)	741, 917
BsiEI	CGRYCG	2 cut(s)	876, 918
BsiHKAI	GWGCWC	3 cut(s)	130, 624, 789
BsiSI	CCGG	7 cut(s)	790, 841, 848, 862, 883, 890, 918
BslI	CCNNNNNNNGG	8 cut(s)	400, 577, 781, 796, 847, 868, 889, 950
BsmAI	GTCTC	5 cut(s)	197, 726, 945, 1114, 1212
BsmBI	CGTCTC	1 cut(s)	726
BsmI	GAATGC	1 cut(s)	635
BsnI	GGCC	2 cut(s)	741, 917
Bsp1286I	GDGCHC	3 cut(s)	130, 624, 789
Bsp143I	GATC	3 cut(s)	154, 669, 873
BspANI	GGCC	2 cut(s)	741, 917
BspCNI	CTCAG	6 cut(s)	178, 199, 579, 640, 897, 1004
BspFNI	CGCG	4 cut(s)	66, 727, 795, 935
BspLI	GGNNCC	1 cut(s)	930
BspPI	GGATC	2 cut(s)	149, 664
BsrDI	GCAATG	2 cut(s)	97, 1041
BsrFI	RCCGGY	1 cut(s)	917
BsrI	ACTGG	4 cut(s)	16, 394, 478, 1230
BssAI	RCCGGY	1 cut(s)	917
BssECI	CCNNGG	2 cut(s)	64, 1016
BssMI	GATC	3 cut(s)	154, 669, 873
BssT1I	CCWWGG	1 cut(s)	1016
Bst2UI	CCWGG	1 cut(s)	926
Bst6I	CTCTTC	1 cut(s)	15
BstAPI	GCANNNNNTGC	1 cut(s)	960
BstC8I	GCNNGC	2 cut(s)	770, 980
BstDEI	CTNAG	8 cut(s)	165, 207, 587, 627, 905, 991, 1094, 1140
BstDSI	CCRYGG	1 cut(s)	64
BstEII	GGTNACC	2 cut(s)	878, 920
BstENI	CCTNNNNNAGG	1 cut(s)	779
BstF5I	GGATG	4 cut(s)	31, 154, 586, 1090
BstFNI	CGCG	4 cut(s)	66, 727, 795, 935
BstH2I	RGCGCY	1 cut(s)	979
BstHHI	GCGC	2 cut(s)	795, 978
BstKTI	GATC	3 cut(s)	157, 672, 876
BstMAI	GTCTC	5 cut(s)	197, 726, 945, 1114, 1212
BstMBI	GATC	3 cut(s)	154, 669, 873
BstMCI	CGRYCG	2 cut(s)	876, 918
BstMWI	GCNNNNNNNGC	9 cut(s)	362, 443, 506, 662, 769, 801, 960, 1136, 1145
BstNI	CCWGG	1 cut(s)	926
BstPI	GGTNACC	2 cut(s)	878, 920
BstSCI	CCNGG	1 cut(s)	924
BstUI	CGCG	4 cut(s)	66, 727, 795, 935
BstZI	CGGCCG	1 cut(s)	915
Bsu36I	CCTNAGG	1 cut(s)	587
BsuRI	GGCC	2 cut(s)	741, 917
BtgI	CCRYGG	1 cut(s)	64
BtsCI	GGATG	4 cut(s)	31, 154, 586, 1090
BtsI	GCAGTG	1 cut(s)	223
BtsIMutI	CAGTG	4 cut(s)	223, 471, 862, 1237
Cac8I	GCNNGC	2 cut(s)	770, 980
CfoI	GCGC	2 cut(s)	795, 978
Cfr10I	RCCGGY	1 cut(s)	917
Cfr42I	CCGCGG	1 cut(s)	67
Csp6I	GTAC	2 cut(s)	360, 503
CviAII	CATG	2 cut(s)	604, 674
CviQI	GTAC	2 cut(s)	360, 503
DdeI	CTNAG	8 cut(s)	165, 207, 587, 627, 905, 991, 1094, 1140
DpnI	GATC	3 cut(s)	156, 671, 875
DpnII	GATC	3 cut(s)	154, 669, 873
EaeI	YGGCCR	2 cut(s)	739, 915
EagI	CGGCCG	1 cut(s)	915
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
Ecl136II	GAGCTC	2 cut(s)	128, 787
EclXI	CGGCCG	1 cut(s)	915
Eco130I	CCWWGG	1 cut(s)	1016
Eco24I	GRGCYC	2 cut(s)	130, 789
Eco52I	CGGCCG	1 cut(s)	915
Eco53kI	GAGCTC	2 cut(s)	128, 787
Eco81I	CCTNAGG	1 cut(s)	587
Eco91I	GGTNACC	2 cut(s)	878, 920
EcoICRI	GAGCTC	2 cut(s)	128, 787
EcoNI	CCTNNNNNAGG	1 cut(s)	779
EcoO65I	GGTNACC	2 cut(s)	878, 920
EcoRII	CCWGG	1 cut(s)	924
EcoT14I	CCWWGG	1 cut(s)	1016
EcoT38I	GRGCYC	2 cut(s)	130, 789
ErhI	CCWWGG	1 cut(s)	1016
Esp3I	CGTCTC	1 cut(s)	726
FaeI	CATG	2 cut(s)	607, 677
FatI	CATG	2 cut(s)	603, 673
FauI	CCCGC	3 cut(s)	71, 514, 940
FauNDI	CATATG	1 cut(s)	686
Fnu4HI	GCNGC	4 cut(s)	691, 828, 831, 915
FokI	GGATG	4 cut(s)	38, 161, 593, 1097
FriOI	GRGCYC	2 cut(s)	130, 789
Fsp4HI	GCNGC	4 cut(s)	691, 828, 831, 915
FspBI	CTAG	6 cut(s)	357, 776, 834, 1017, 1127, 1152
GlaI	GCGC	2 cut(s)	794, 977
GluI	GCNGC	4 cut(s)	691, 828, 831, 915
GsaI	CCCAGC	2 cut(s)	709, 1182
GsuI	CTGGAG	3 cut(s)	33, 377, 525
HaeII	RGCGCY	1 cut(s)	979
HaeIII	GGCC	2 cut(s)	741, 917
HapII	CCGG	7 cut(s)	790, 841, 848, 862, 883, 890, 918
HhaI	GCGC	2 cut(s)	795, 978
Hin1II	CATG	2 cut(s)	607, 677
Hin6I	GCGC	2 cut(s)	793, 976
HinP1I	GCGC	2 cut(s)	793, 976
HincII	GTYRAC	2 cut(s)	384, 757
HindII	GTYRAC	2 cut(s)	384, 757
HinfI	GANTC	7 cut(s)	133, 226, 722, 844, 865, 886, 1051
HpaI	GTTAAC	1 cut(s)	384
HpaII	CCGG	7 cut(s)	790, 841, 848, 862, 883, 890, 918
HphI	GGTGA	2 cut(s)	164, 932
Hpy166II	GTNNAC	2 cut(s)	384, 757
Hpy188I	TCNGA	6 cut(s)	132, 168, 1007, 1050, 1081, 1114
Hpy188III	TCNNGA	1 cut(s)	449
Hpy8I	GTNNAC	2 cut(s)	384, 757
Hpy99I	CGWCG	2 cut(s)	1011, 1223
HpyAV	CCTTC	3 cut(s)	25, 450, 1051
HpyCH4V	TGCA	5 cut(s)	90, 332, 603, 1034, 1203
HpyF10VI	GCNNNNNNNGC	9 cut(s)	362, 443, 506, 662, 769, 801, 960, 1136, 1145
HpyF3I	CTNAG	8 cut(s)	165, 207, 587, 627, 905, 991, 1094, 1140
Hsp92II	CATG	2 cut(s)	607, 677
HspAI	GCGC	2 cut(s)	793, 976
KspAI	GTTAAC	1 cut(s)	384
KspI	CCGCGG	1 cut(s)	67
Kzo9I	GATC	3 cut(s)	154, 669, 873
LmnI	GCTCC	8 cut(s)	125, 451, 768, 777, 784, 792, 934, 1180
LweI	GCATC	1 cut(s)	571
MaeI	CTAG	6 cut(s)	357, 776, 834, 1017, 1127, 1152
MaeIII	GTNAC	7 cut(s)	7, 190, 535, 836, 857, 878, 920
MalI	GATC	3 cut(s)	156, 671, 875
MboI	GATC	3 cut(s)	154, 669, 873
MboII	GAAGA	3 cut(s)	32, 564, 996
MfeI	CAATTG	1 cut(s)	970
MhlI	GDGCHC	3 cut(s)	130, 624, 789
MlsI	TGGCCA	1 cut(s)	741
MluCI	AATT	6 cut(s)	74, 273, 410, 816, 970, 1116
MluNI	TGGCCA	1 cut(s)	741
MmeI	TCCRAC	1 cut(s)	1030
Mox20I	TGGCCA	1 cut(s)	741
MroXI	GAANNNNTTC	1 cut(s)	596
MscI	TGGCCA	1 cut(s)	741
MseI	TTAA	3 cut(s)	114, 243, 383
Msp20I	TGGCCA	1 cut(s)	741
MspA1I	CMGCKG	2 cut(s)	66, 509
MspI	CCGG	7 cut(s)	790, 841, 848, 862, 883, 890, 918
MspR9I	CCNGG	1 cut(s)	926
MunI	CAATTG	1 cut(s)	970
Mva1269I	GAATGC	1 cut(s)	635
MvaI	CCWGG	1 cut(s)	926
MvnI	CGCG	4 cut(s)	66, 727, 795, 935
MwoI	GCNNNNNNNGC	9 cut(s)	362, 443, 506, 662, 769, 801, 960, 1136, 1145
NdeI	CATATG	1 cut(s)	686
NdeII	GATC	3 cut(s)	154, 669, 873
NlaIII	CATG	2 cut(s)	607, 677
NlaIV	GGNNCC	1 cut(s)	930
NmuCI	GTSAC	6 cut(s)	7, 190, 535, 836, 857, 920
PcsI	WCGNNNNNNNCGW	1 cut(s)	1218
PctI	GAATGC	1 cut(s)	635
PdmI	GAANNNNTTC	1 cut(s)	596
PfeI	GAWTC	7 cut(s)	133, 226, 722, 844, 865, 886, 1051
PflMI	CCANNNNNTGG	1 cut(s)	577
PkrI	GCNGC	4 cut(s)	692, 829, 832, 916
Ple19I	CGATCG	1 cut(s)	876
Psp124BI	GAGCTC	2 cut(s)	130, 789
Psp6I	CCWGG	1 cut(s)	924
PspEI	GGTNACC	2 cut(s)	878, 920
PspFI	CCCAGC	2 cut(s)	705, 1178
PspGI	CCWGG	1 cut(s)	924
PspN4I	GGNNCC	1 cut(s)	930
PvuI	CGATCG	1 cut(s)	876
RsaI	GTAC	2 cut(s)	361, 504
RsaNI	GTAC	2 cut(s)	360, 503
SacI	GAGCTC	2 cut(s)	130, 789
SacII	CCGCGG	1 cut(s)	67
SaqAI	TTAA	3 cut(s)	114, 243, 383
SatI	GCNGC	4 cut(s)	691, 828, 831, 915
Sau3AI	GATC	3 cut(s)	154, 669, 873
ScrFI	CCNGG	1 cut(s)	926
SduI	GDGCHC	3 cut(s)	130, 624, 789
SfaNI	GCATC	1 cut(s)	571
Sfr303I	CCGCGG	1 cut(s)	67
SgrBI	CCGCGG	1 cut(s)	67
SmlI	CTYRAG	2 cut(s)	346, 617
SmoI	CTYRAG	2 cut(s)	346, 617
Sse9I	AATT	6 cut(s)	74, 273, 410, 816, 970, 1116
SspMI	CTAG	6 cut(s)	357, 776, 834, 1017, 1127, 1152
SstI	GAGCTC	2 cut(s)	130, 789
StyD4I	CCNGG	1 cut(s)	924
StyI	CCWWGG	1 cut(s)	1016
TaqI	TCGA	2 cut(s)	780, 1218
TasI	AATT	6 cut(s)	74, 273, 410, 816, 970, 1116
TatI	WGTACW	1 cut(s)	359
TauI	GCSGC	4 cut(s)	693, 830, 833, 917
TfiI	GAWTC	7 cut(s)	133, 226, 722, 844, 865, 886, 1051
Tru1I	TTAA	3 cut(s)	114, 243, 383
Tru9I	TTAA	3 cut(s)	114, 243, 383
TscAI	CASTG	4 cut(s)	223, 478, 862, 1237
TseFI	GTSAC	6 cut(s)	7, 190, 535, 836, 857, 920
Tsp45I	GTSAC	6 cut(s)	7, 190, 535, 836, 857, 920
TspDTI	ATGAA	3 cut(s)	33, 95, 1033
TspRI	CASTG	4 cut(s)	223, 478, 862, 1237
Van91I	CCANNNNNTGG	1 cut(s)	577
XagI	CCTNNNNNAGG	1 cut(s)	779
XapI	RAATTY	3 cut(s)	410, 816, 1116
XcmI	CCANNNNNNNNNTGG	1 cut(s)	574
XmaJI	CCTAGG	1 cut(s)	1016
XmnI	GAANNNNTTC	1 cut(s)	596
XspI	CTAG	6 cut(s)	357, 776, 834, 1017, 1127, 1152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.