Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000660.1

Orthogroup ID

OG0001753

Physical Location & Seq

Genomic Coordinates Reverse (-)

20619 .. 21242

Gene Structure 624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000660.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

atggtacctttagtcccttttatagtgaggaaaattgccattatagctttcaattcgcctctgaccatcaaatcctttggaactatagtcattttcatagcgaggaaattcactatagtatgtggatgcataatctcttcagcaagggaaatctttagatggatccgtggtcgtcacatgtacaggaaattgttgagatcacccaaaaagaagagcagaagattagagattcccgattcttcaccttctgaatgtgctcctaatgaagtcgttaacgagtttcagagcaatgaggactataagctaccgaggcctggttccagaaactctacctcggcttcacgcatttcacctggcctaggttctaaaagtgcatcaccatcagatggaaggttatatccttcttacatccacactgcacctgaaaggagagcaatgacaaaacatgagtgggacagtctcactagacacacaacagagaaggccttggaagaacttgcttcttctcctgattttggcaaatgggttgttgcaaatgcagatagaatcaatgtaaccacccttagtttgcgaggtcgtcacccgacaacaaataggacagaaactgtgcgtttaaatctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NEMP

Protein Analysis

207

Amino Acids

23.38

Weight (kDa)

10.41

Isoelectric Point (pI)

58.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67610 AT5G67610
fragaria_vesca	FvH4_1g17850 FvH4_1g17850 FvH4_1g17850 FvH4_1g17850 FvH4_1g17850 FvH4_1g17850 FvH4_1g17850 FvH4_1g17850 FvH4_1g17850
malus_domestica	MD02G1187300.v1.1 MD02G1187400.v1.1 MD15G1298300.v1.1
prunus_persica	Prupe.6G219400_v2.0.a1 Prupe.6G219400_v2.0.a1 Prupe.6G219400_v2.0.a1
pyrus_communis	pycom15g26110
rosa_chinensis	RchiOBHm_Chr2g0108281 RchiOBHm_Chr5g0059801 RchiOBHm_Chr5g0059811 RchiOBHm_Chr5g0059831
rosa_laevigata	RLG00000017659
rosa_multiflora	Rmu_co8406947.1_g000001 Rmu_sc0000660.1_g000013 Rmu_sc0000660.1_g000014 Rmu_sc0002372.1_g000006 Rmu_sc0005742.1_g000004
rosa_roxburghii	Rroxscaffold_1G00020760 Rroxscaffold_2G00135320
rosa_rugosa	Rorug02G0152100 Rorug05G0326100 Rorug05G0326200
rosa_samantha	Rh2AG200600 Rh2BG213300 Rh2CG205300 Rh2DG208100 Rh5AG390700 Rh5BG402200 Rh5BG402300 Rh5BG402500 Rh5CG426200 Rh5CG426300 Rh5CG426400 Rh5DG418600
rosa_wichuraiana	Rw2G015960 Rw2G015970 Rw5G036750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	4
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	386
AclWI	GGATC	2 cut(s)	157, 170
AcsI	RAATTY	1 cut(s)	107
AcuI	CTGAAG	1 cut(s)	123
AfaI	GTAC	2 cut(s)	6, 182
AfiI	CCNNNNNNNGG	4 cut(s)	314, 359, 386, 515
AflIII	ACRYGT	1 cut(s)	177
AgsI	TTSAA	1 cut(s)	52
AjnI	CCWGG	2 cut(s)	313, 352
AluBI	AGCT	2 cut(s)	47, 304
AluI	AGCT	2 cut(s)	47, 304
Alw21I	GWGCWC	1 cut(s)	259
Alw26I	GTCTC	1 cut(s)	464
AlwI	GGATC	2 cut(s)	157, 170
AlwNI	CAGNNNCTG	1 cut(s)	605
AoxI	GGCC	3 cut(s)	311, 355, 483
ApoI	RAATTY	1 cut(s)	107
Asp718I	GGTACC	1 cut(s)	4
AspA2I	CCTAGG	1 cut(s)	358
AsuHPI	GGTGA	5 cut(s)	192, 234, 342, 369, 572
AvrII	CCTAGG	1 cut(s)	358
BamHI	GGATCC	1 cut(s)	162
BanI	GGYRCC	1 cut(s)	4
Bbv12I	GWGCWC	1 cut(s)	259
BccI	CCATC	4 cut(s)	74, 153, 380, 388
BciT130I	CCWGG	2 cut(s)	315, 354
BcoDI	GTCTC	1 cut(s)	464
BfaI	CTAG	2 cut(s)	359, 465
BfmI	CTRYAG	2 cut(s)	84, 114
BlnI	CCTAGG	1 cut(s)	358
Bme1390I	CCNGG	2 cut(s)	315, 354
BmiI	GGNNCC	3 cut(s)	6, 164, 319
BmrFI	CCNGG	2 cut(s)	315, 354
BmsI	GCATC	2 cut(s)	116, 383
BsaJI	CCNNGG	5 cut(s)	166, 308, 333, 358, 486
Bsc4I	CCNNNNNNNGG	4 cut(s)	314, 359, 386, 515
Bse3DI	GCAATG	2 cut(s)	295, 441
BseBI	CCWGG	2 cut(s)	315, 354
BseDI	CCNNGG	5 cut(s)	166, 308, 333, 358, 486
BseGI	GGATG	2 cut(s)	131, 408
BseLI	CCNNNNNNNGG	4 cut(s)	314, 359, 386, 515
BseMI	GCAATG	2 cut(s)	295, 441
BsgI	GTGCAG	1 cut(s)	402
BshFI	GGCC	3 cut(s)	313, 357, 485
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	1 cut(s)	259
BslFI	GGGAC	1 cut(s)	467
BslI	CCNNNNNNNGG	4 cut(s)	314, 359, 386, 515
BsmAI	GTCTC	1 cut(s)	464
BsmFI	GGGAC	1 cut(s)	467
BsnI	GGCC	3 cut(s)	313, 357, 485
Bsp1286I	GDGCHC	1 cut(s)	259
Bsp1407I	TGTACA	1 cut(s)	180
Bsp143I	GATC	2 cut(s)	162, 197
BspANI	GGCC	3 cut(s)	313, 357, 485
BspLI	GGNNCC	3 cut(s)	6, 164, 319
BspPI	GGATC	2 cut(s)	157, 170
BspQI	GCTCTTC	1 cut(s)	206
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	2 cut(s)	295, 441
BsrGI	TGTACA	1 cut(s)	180
BssECI	CCNNGG	5 cut(s)	166, 308, 333, 358, 486
BssMI	GATC	2 cut(s)	162, 197
BssT1I	CCWWGG	2 cut(s)	358, 486
Bst2UI	CCWGG	2 cut(s)	315, 354
Bst4CI	ACNGT	2 cut(s)	458, 607
Bst6I	CTCTTC	2 cut(s)	142, 206
BstAUI	TGTACA	1 cut(s)	180
BstDEI	CTNAG	1 cut(s)	563
BstDSI	CCRYGG	1 cut(s)	166
BstENI	CCTNNNNNAGG	1 cut(s)	357
BstF5I	GGATG	2 cut(s)	131, 408
BstKTI	GATC	2 cut(s)	165, 200
BstMAI	GTCTC	1 cut(s)	464
BstMBI	GATC	2 cut(s)	162, 197
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 310
BstNI	CCWGG	2 cut(s)	315, 354
BstNSI	RCATGY	1 cut(s)	181
BstSCI	CCNGG	2 cut(s)	313, 352
BstSFI	CTRYAG	2 cut(s)	84, 114
BstX2I	RGATCY	1 cut(s)	162
BstYI	RGATCY	1 cut(s)	162
BsuRI	GGCC	3 cut(s)	313, 357, 485
BtgI	CCRYGG	1 cut(s)	166
BtsCI	GGATG	2 cut(s)	131, 408
BtsI	GCAGTG	1 cut(s)	414
BtsIMutI	CAGTG	1 cut(s)	414
CaiI	CAGNNNCTG	1 cut(s)	605
Csp6I	GTAC	2 cut(s)	5, 181
CviAII	CATG	2 cut(s)	178, 446
CviJI	RGCY	6 cut(s)	47, 304, 313, 338, 357, 485
CviKI_1	RGCY	6 cut(s)	47, 304, 313, 338, 357, 485
CviQI	GTAC	2 cut(s)	5, 181
DdeI	CTNAG	1 cut(s)	563
DpnI	GATC	2 cut(s)	164, 199
DpnII	GATC	2 cut(s)	162, 197
DraI	TTTAAA	1 cut(s)	615
Eam1104I	CTCTTC	2 cut(s)	142, 206
EarI	CTCTTC	2 cut(s)	142, 206
Eco130I	CCWWGG	2 cut(s)	358, 486
Eco147I	AGGCCT	2 cut(s)	313, 485
Eco57I	CTGAAG	1 cut(s)	123
EcoNI	CCTNNNNNAGG	1 cut(s)	357
EcoRII	CCWGG	2 cut(s)	313, 352
EcoT14I	CCWWGG	2 cut(s)	358, 486
EcoT22I	ATGCAT	1 cut(s)	131
ErhI	CCWWGG	2 cut(s)	358, 486
FaeI	CATG	2 cut(s)	181, 449
FaqI	GGGAC	1 cut(s)	467
FatI	CATG	2 cut(s)	177, 445
FokI	GGATG	2 cut(s)	138, 395
FspBI	CTAG	2 cut(s)	359, 465
HaeIII	GGCC	3 cut(s)	313, 357, 485
Hin1II	CATG	2 cut(s)	181, 449
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HinfI	GANTC	3 cut(s)	229, 236, 546
HpaI	GTTAAC	1 cut(s)	274
HphI	GGTGA	5 cut(s)	192, 234, 342, 369, 572
Hpy166II	GTNNAC	1 cut(s)	274
Hpy188I	TCNGA	5 cut(s)	63, 250, 285, 385, 623
Hpy188III	TCNNGA	3 cut(s)	233, 321, 509
Hpy8I	GTNNAC	1 cut(s)	274
HpyAV	CCTTC	4 cut(s)	255, 384, 411, 475
HpyCH4III	ACNGT	2 cut(s)	458, 607
HpyCH4V	TGCA	5 cut(s)	129, 374, 419, 533, 539
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 310
HpyF3I	CTNAG	1 cut(s)	563
Hsp92II	CATG	2 cut(s)	181, 449
KpnI	GGTACC	1 cut(s)	8
KspAI	GTTAAC	1 cut(s)	274
Kzo9I	GATC	2 cut(s)	162, 197
LguI	GCTCTTC	1 cut(s)	206
LmnI	GCTCC	1 cut(s)	262
LpnPI	CCDG	8 cut(s)	169, 300, 327, 334, 339, 366, 435, 522
LweI	GCATC	2 cut(s)	116, 383
MaeI	CTAG	2 cut(s)	359, 465
MaeIII	GTNAC	3 cut(s)	173, 553, 578
MalI	GATC	2 cut(s)	164, 199
MboI	GATC	2 cut(s)	162, 197
MboII	GAAGA	6 cut(s)	129, 223, 231, 231, 495, 503
MflI	RGATCY	1 cut(s)	162
MhlI	GDGCHC	1 cut(s)	259
MluCI	AATT	4 cut(s)	33, 52, 107, 188
MnlI	CCTC	7 cut(s)	21, 69, 96, 286, 303, 343, 566
Mph1103I	ATGCAT	1 cut(s)	131
MseI	TTAA	2 cut(s)	273, 614
MspR9I	CCNGG	2 cut(s)	315, 354
MvaI	CCWGG	2 cut(s)	315, 354
MwoI	GCNNNNNNNGC	2 cut(s)	44, 310
NdeII	GATC	2 cut(s)	162, 197
NlaIII	CATG	2 cut(s)	181, 449
NlaIV	GGNNCC	3 cut(s)	6, 164, 319
NmeAIII	GCCGAG	1 cut(s)	314
NmuCI	GTSAC	2 cut(s)	173, 578
NsiI	ATGCAT	1 cut(s)	131
NspI	RCATGY	1 cut(s)	181
PceI	AGGCCT	2 cut(s)	313, 485
PciI	ACATGT	1 cut(s)	177
PciSI	GCTCTTC	1 cut(s)	206
PfeI	GAWTC	3 cut(s)	229, 236, 546
PflMI	CCANNNNNTGG	1 cut(s)	386
PscI	ACATGT	1 cut(s)	177
Psp6I	CCWGG	2 cut(s)	313, 352
PspGI	CCWGG	2 cut(s)	313, 352
PspN4I	GGNNCC	3 cut(s)	6, 164, 319
PstNI	CAGNNNCTG	1 cut(s)	605
PsuI	RGATCY	1 cut(s)	162
RsaI	GTAC	2 cut(s)	6, 182
RsaNI	GTAC	2 cut(s)	5, 181
SapI	GCTCTTC	1 cut(s)	206
SaqAI	TTAA	2 cut(s)	273, 614
Sau3AI	GATC	2 cut(s)	162, 197
ScrFI	CCNGG	2 cut(s)	315, 354
SduI	GDGCHC	1 cut(s)	259
SfaNI	GCATC	2 cut(s)	116, 383
SfcI	CTRYAG	2 cut(s)	84, 114
Sse9I	AATT	4 cut(s)	33, 52, 107, 188
SseBI	AGGCCT	2 cut(s)	313, 485
SspMI	CTAG	2 cut(s)	359, 465
StuI	AGGCCT	2 cut(s)	313, 485
StyD4I	CCNGG	2 cut(s)	313, 352
StyI	CCWWGG	2 cut(s)	358, 486
TaaI	ACNGT	2 cut(s)	458, 607
TasI	AATT	4 cut(s)	33, 52, 107, 188
TatI	WGTACW	1 cut(s)	180
TfiI	GAWTC	3 cut(s)	229, 236, 546
Tru1I	TTAA	2 cut(s)	273, 614
Tru9I	TTAA	2 cut(s)	273, 614
TscAI	CASTG	1 cut(s)	421
TseFI	GTSAC	2 cut(s)	173, 578
Tsp45I	GTSAC	2 cut(s)	173, 578
TspDTI	ATGAA	2 cut(s)	85, 279
TspGWI	ACGGA	1 cut(s)	155
TspRI	CASTG	1 cut(s)	421
Van91I	CCANNNNNTGG	1 cut(s)	386
XagI	CCTNNNNNAGG	1 cut(s)	357
XapI	RAATTY	1 cut(s)	107
XceI	RCATGY	1 cut(s)	181
XmaJI	CCTAGG	1 cut(s)	358
XspI	CTAG	2 cut(s)	359, 465
Zsp2I	ATGCAT	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.