Rh2AG200600

NEMP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001753
Physical Location & Seq
Reverse (-)
20259853 .. 20264164
4312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG200600.1

Sequence Viewer

Length: 1203 bp
ATGGCTTCTTCTAAGCCGGTTCGGGTCGCTGCGTGCATTCTATGGCTTCTGTTCCTCACGCTTCCCTCTTCTTCTTCTTCCTCTGAATCGCCGACTGAGTATTCTCTAGTAATTGGTGAGAATGCTACTCTGCAATTATCGAATGGTGTGCTGGTGCAAAATTCTCCTGGTGCTAAGCCTGGAACTTCACTGTTGTGTGGAAGAGTTCATGTATGTGGATTGTCAAGGCTTAAATATCTGGAGAAGTTTGCCGACACGGTGAAGGTGAAGATATCAACAAATTCGAGCTTTCGGATACGGCCTTTTGAGGTTTGCTTCCACAGAAATACTTCTCGTGGGATAGGGATGTGCCCTCACAGCCAGTGGGAGAAAGTTTCCAAGGGGTCCTGGTCTGGATCCATGTCACCTTATGAGCGCAAACTCTTAGATATACGGACAGTGGGTTCATCCTTAGAGAGTTTTGAGGTGTCCCTTGAAGAAGAATTTTTTATATCTCGCCTAGTATTTTTTGTGTCTGGTGTAATCTTGATGAGTTTGGCACCTTCTCTGAGCAATTCATTGGTATTCTATTACGGCAGTGGAATGGCAATAGGGGTGGTCCTTGTACTCTTGATCGTCCTTTTTCAGGGGATGAAGCTTCTCCCAACAGGTCGGAAGAGTTCGCTCGGAATTTTTTTGTTTTCATCTGTGGTTGGTTTGGGATCTTTTCTCCTCAGCTACATCCCAGGGCTATTGCGTTCAGTACTAACAGAGTTTGGAATTAGCGAAGAGATGTATAATCCTTTGGCTATATTTCTTCTGGCTTTTATTTTTCTGGCTGGAGCATGGTTGGGATTCTGGACAGTTCGTAAAATGGCCCTGAGAGAAGATGGATCAATTGATTCTAGCACATCTCTGTTTGTTTTGTGGACCATCCGGTTTGTAGCTCTTCTTCTGCTTTCACAGAGTTCTGGTGATCCGCTACTGGCAGCAGGAGCCATAACTGTCCCCTTGCTCCCTTTTATAGTGAGGAAAATTGCTATAATGTTTGGAGTTATACTCTCTTTTATGAGGAAAATAACCATAGCATTTGGAACAGTAGTCTCTTTTATAGCGAGGACAATCGCTATAATATTTGGAGGTGTAATCTCTTCAGTGCGGGAAATCTTCAGATGGATTCGTCACCGTCGCATGTTCAGGTATCTGGTATCATGTCTCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NEMP

Protein Analysis

400

Amino Acids

44.07

Weight (kDa)

9.92

Isoelectric Point (pI)

44.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NEMP PF10225 155 - 345 1.1e-34 NEMP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 538
AciI CCGC 2 cut(s) 959, 1138
AclWI GGATC 5 cut(s) 390, 403, 709, 880, 950
AcsI RAATTY 4 cut(s) 160, 280, 482, 669
AcuI CTGAAG 2 cut(s) 1116, 1132
AfaI GTAC 2 cut(s) 606, 744
AfiI CCNNNNNNNGG 1 cut(s) 625
AgsI TTSAA 1 cut(s) 476
AjnI CCWGG 4 cut(s) 166, 178, 386, 724
AleI CACNNNNGTG 1 cut(s) 193
AloI GAACNNNNNNTCC 2 cut(s) 427, 459
AluBI AGCT 4 cut(s) 288, 637, 717, 926
AluI AGCT 4 cut(s) 288, 637, 717, 926
Alw26I GTCTC 2 cut(s) 1087, 1199
AlwI GGATC 5 cut(s) 390, 403, 709, 880, 950
AoxI GGCC 2 cut(s) 299, 855
ApeKI GCWGC 2 cut(s) 29, 968
ApoI RAATTY 4 cut(s) 160, 280, 482, 669
Asp700I GAANNNNTTC 1 cut(s) 328
AspLEI GCGC 1 cut(s) 417
AspS9I GGNCC 4 cut(s) 384, 598, 856, 909
AsuHPI GGTGA 6 cut(s) 128, 271, 277, 396, 965, 1154
AvaII GGWCC 3 cut(s) 384, 598, 909
BaeGI GKGCMC 1 cut(s) 353
BamHI GGATCC 1 cut(s) 395
BanI GGYRCC 1 cut(s) 538
BarI GAAGNNNNNNTAC 2 cut(s) 915, 947
BauI CACGAG 1 cut(s) 333
BbvCI CCTCAGC 1 cut(s) 713
BbvI GCAGC 2 cut(s) 16, 980
BccI CCATC 3 cut(s) 863, 920, 1146
BceAI ACGGC 2 cut(s) 314, 589
BcgI CGANNNNNNTGC 2 cut(s) 130, 164
BciT130I CCWGG 4 cut(s) 168, 180, 388, 726
BciVI GTATCC 1 cut(s) 288
BcoDI GTCTC 2 cut(s) 1087, 1199
BfaI CTAG 3 cut(s) 107, 500, 885
BfuI GTATCC 1 cut(s) 288
BisI GCNGC 2 cut(s) 30, 969
BlpI GCTNAGC 1 cut(s) 174
BlsI GCNGC 2 cut(s) 31, 970
BmcAI AGTACT 1 cut(s) 744
Bme1390I CCNGG 4 cut(s) 168, 180, 388, 726
Bme18I GGWCC 3 cut(s) 384, 598, 909
BmgT120I GGNCC 4 cut(s) 384, 598, 856, 909
BmiI GGNNCC 4 cut(s) 385, 397, 540, 976
BmrFI CCNGG 4 cut(s) 168, 180, 388, 726
BplI GAGNNNNNCTC 2 cut(s) 1023, 1055
BpmI CTGGAG 2 cut(s) 260, 840
Bpu10I CCTNAGC 1 cut(s) 713
Bpu1102I GCTNAGC 1 cut(s) 174
BsaJI CCNNGG 3 cut(s) 378, 724, 725
BsaWI WCCGGW 1 cut(s) 915
Bsc4I CCNNNNNNNGG 1 cut(s) 625
Bse118I RCCGGY 1 cut(s) 16
Bse1I ACTGG 2 cut(s) 361, 969
BseBI CCWGG 4 cut(s) 168, 180, 388, 726
BseDI CCNNGG 3 cut(s) 378, 724, 725
BseGI GGATG 5 cut(s) 351, 446, 636, 720, 912
BseLI CCNNNNNNNGG 1 cut(s) 625
BseMII CTCAG 4 cut(s) 87, 539, 727, 851
BseNI ACTGG 2 cut(s) 361, 969
BseRI GAGGAG 1 cut(s) 701
BseSI GKGCMC 1 cut(s) 353
BseXI GCAGC 2 cut(s) 16, 980
BshFI GGCC 2 cut(s) 301, 857
BshNI GGYRCC 1 cut(s) 538
BsiSI CCGG 2 cut(s) 17, 916
BslFI GGGAC 2 cut(s) 454, 971
BslI CCNNNNNNNGG 1 cut(s) 625
BsmAI GTCTC 2 cut(s) 1087, 1199
BsmFI GGGAC 2 cut(s) 454, 971
BsmI GAATGC 2 cut(s) 36, 127
BsnI GGCC 2 cut(s) 301, 857
Bsp1286I GDGCHC 1 cut(s) 353
Bsp143I GATC 5 cut(s) 395, 612, 701, 872, 955
Bsp1720I GCTNAGC 1 cut(s) 174
BspACI CCGC 2 cut(s) 959, 1138
BspANI GGCC 2 cut(s) 301, 857
BspCNI CTCAG 4 cut(s) 88, 540, 726, 852
BspLI GGNNCC 4 cut(s) 385, 397, 540, 976
BspPI GGATC 5 cut(s) 390, 403, 709, 880, 950
BspQI GCTCTTC 1 cut(s) 933
BspT107I GGYRCC 1 cut(s) 538
BsrFI RCCGGY 1 cut(s) 16
BsrI ACTGG 2 cut(s) 361, 969
BssAI RCCGGY 1 cut(s) 16
BssECI CCNNGG 3 cut(s) 378, 724, 725
BssMI GATC 5 cut(s) 395, 612, 701, 872, 955
BssSI CACGAG 1 cut(s) 333
BssT1I CCWWGG 1 cut(s) 378
Bst2BI CACGAG 1 cut(s) 333
Bst2UI CCWGG 4 cut(s) 168, 180, 388, 726
Bst4CI ACNGT 7 cut(s) 192, 259, 439, 844, 985, 1078, 1166
Bst6I CTCTTC 6 cut(s) 73, 196, 650, 762, 933, 1135
BstC8I GCNNGC 1 cut(s) 34
BstDEI CTNAG 8 cut(s) 12, 96, 174, 424, 451, 548, 713, 860
BstENI CCTNNNNNAGG 1 cut(s) 623
BstF5I GGATG 5 cut(s) 351, 446, 636, 720, 912
BstHHI GCGC 1 cut(s) 417
BstKTI GATC 5 cut(s) 398, 615, 704, 875, 958
BstMAI GTCTC 2 cut(s) 1087, 1199
BstMBI GATC 5 cut(s) 395, 612, 701, 872, 955
BstMWI GCNNNNNNNGC 2 cut(s) 357, 974
BstNI CCWGG 4 cut(s) 168, 180, 388, 726
BstNSI RCATGY 1 cut(s) 1174
BstSCI CCNGG 4 cut(s) 166, 178, 386, 724
BstSLI GKGCMC 1 cut(s) 353
BstV1I GCAGC 2 cut(s) 16, 980
BstX2I RGATCY 2 cut(s) 395, 701
BstYI RGATCY 2 cut(s) 395, 701
BsuI GTATCC 1 cut(s) 288
BsuRI GGCC 2 cut(s) 301, 857
BtsCI GGATG 5 cut(s) 351, 446, 636, 720, 912
BtsI GCAGTG 1 cut(s) 583
BtsIMutI CAGTG 5 cut(s) 188, 368, 444, 583, 1140
Cac8I GCNNGC 1 cut(s) 34
CfoI GCGC 1 cut(s) 417
Cfr10I RCCGGY 1 cut(s) 16
Cfr13I GGNCC 4 cut(s) 384, 598, 856, 909
Csp6I GTAC 2 cut(s) 605, 743
CspCI CAANNNNNGTGG 2 cut(s) 576, 611
CviAII CATG 5 cut(s) 209, 400, 825, 1171, 1191
CviQI GTAC 2 cut(s) 605, 743
DdeI CTNAG 8 cut(s) 12, 96, 174, 424, 451, 548, 713, 860
DpnI GATC 5 cut(s) 397, 614, 703, 874, 957
DpnII GATC 5 cut(s) 395, 612, 701, 872, 955
Eam1104I CTCTTC 6 cut(s) 73, 196, 650, 762, 933, 1135
EarI CTCTTC 6 cut(s) 73, 196, 650, 762, 933, 1135
Eco130I CCWWGG 1 cut(s) 378
Eco32I GATATC 1 cut(s) 273
Eco47I GGWCC 3 cut(s) 384, 598, 909
Eco57I CTGAAG 2 cut(s) 1116, 1132
EcoNI CCTNNNNNAGG 1 cut(s) 623
EcoO109I RGGNCCY 1 cut(s) 384
EcoRII CCWGG 4 cut(s) 166, 178, 386, 724
EcoRV GATATC 1 cut(s) 273
EcoT14I CCWWGG 1 cut(s) 378
ErhI CCWWGG 1 cut(s) 378
FaeI CATG 5 cut(s) 212, 403, 828, 1174, 1194
FaqI GGGAC 2 cut(s) 454, 971
FatI CATG 5 cut(s) 208, 399, 824, 1170, 1190
FauI CCCGC 1 cut(s) 1131
Fnu4HI GCNGC 2 cut(s) 30, 969
FokI GGATG 5 cut(s) 358, 433, 643, 707, 899
Fsp4HI GCNGC 2 cut(s) 30, 969
FspBI CTAG 3 cut(s) 107, 500, 885
GlaI GCGC 1 cut(s) 416
GluI GCNGC 2 cut(s) 30, 969
GsuI CTGGAG 2 cut(s) 260, 840
HaeIII GGCC 2 cut(s) 301, 857
HapII CCGG 2 cut(s) 17, 916
HhaI GCGC 1 cut(s) 417
Hin1II CATG 5 cut(s) 212, 403, 828, 1174, 1194
Hin6I GCGC 1 cut(s) 415
HinP1I GCGC 1 cut(s) 415
HindIII AAGCTT 1 cut(s) 635
HinfI GANTC 4 cut(s) 86, 834, 881, 1156
HpaII CCGG 2 cut(s) 17, 916
HphI GGTGA 6 cut(s) 128, 271, 277, 396, 965, 1154
Hpy166II GTNNAC 1 cut(s) 909
Hpy188I TCNGA 6 cut(s) 85, 294, 549, 654, 668, 1151
Hpy188III TCNNGA 5 cut(s) 239, 393, 526, 610, 838
Hpy8I GTNNAC 1 cut(s) 909
Hpy99I CGWCG 1 cut(s) 1170
HpyAV CCTTC 2 cut(s) 256, 552
HpyCH4III ACNGT 7 cut(s) 192, 259, 439, 844, 985, 1078, 1166
HpyCH4V TGCA 3 cut(s) 36, 133, 157
HpyF10VI GCNNNNNNNGC 2 cut(s) 357, 974
HpyF3I CTNAG 8 cut(s) 12, 96, 174, 424, 451, 548, 713, 860
Hsp92II CATG 5 cut(s) 212, 403, 828, 1174, 1194
HspAI GCGC 1 cut(s) 415
Kzo9I GATC 5 cut(s) 395, 612, 701, 872, 955
LguI GCTCTTC 1 cut(s) 933
LmnI GCTCC 3 cut(s) 821, 974, 999
Lsp1109I GCAGC 2 cut(s) 16, 980
MaeI CTAG 3 cut(s) 107, 500, 885
MaeIII GTNAC 2 cut(s) 402, 1160
MalI GATC 5 cut(s) 397, 614, 703, 874, 957
MboI GATC 5 cut(s) 395, 612, 701, 872, 955
MfeI CAATTG 1 cut(s) 876
MflI RGATCY 2 cut(s) 395, 701
MhlI GDGCHC 1 cut(s) 353
MmeI TCCRAC 1 cut(s) 632
MroXI GAANNNNTTC 1 cut(s) 328
MseI TTAA 1 cut(s) 231
MslI CAYNNNNRTG 2 cut(s) 193, 213
MspI CCGG 2 cut(s) 17, 916
MspR9I CCNGG 4 cut(s) 168, 180, 388, 726
MunI CAATTG 1 cut(s) 876
Mva1269I GAATGC 2 cut(s) 36, 127
MvaI CCWGG 4 cut(s) 168, 180, 388, 726
MwoI GCNNNNNNNGC 2 cut(s) 357, 974
NdeII GATC 5 cut(s) 395, 612, 701, 872, 955
NlaIII CATG 5 cut(s) 212, 403, 828, 1174, 1194
NlaIV GGNNCC 4 cut(s) 385, 397, 540, 976
NmuCI GTSAC 2 cut(s) 402, 1160
NspI RCATGY 1 cut(s) 1174
OliI CACNNNNGTG 1 cut(s) 193
PasI CCCWGGG 1 cut(s) 725
PciSI GCTCTTC 1 cut(s) 933
PctI GAATGC 2 cut(s) 36, 127
PdmI GAANNNNTTC 1 cut(s) 328
PfeI GAWTC 4 cut(s) 86, 834, 881, 1156
PkrI GCNGC 2 cut(s) 31, 970
PpuMI RGGWCCY 1 cut(s) 384
Psp5II RGGWCCY 1 cut(s) 384
Psp6I CCWGG 4 cut(s) 166, 178, 386, 724
PspGI CCWGG 4 cut(s) 166, 178, 386, 724
PspN4I GGNNCC 4 cut(s) 385, 397, 540, 976
PspPI GGNCC 4 cut(s) 384, 598, 856, 909
PspPPI RGGWCCY 1 cut(s) 384
PsuI RGATCY 2 cut(s) 395, 701
RsaI GTAC 2 cut(s) 606, 744
RsaNI GTAC 2 cut(s) 605, 743
RseI CAYNNNNRTG 2 cut(s) 193, 213
SapI GCTCTTC 1 cut(s) 933
SaqAI TTAA 1 cut(s) 231
SatI GCNGC 2 cut(s) 30, 969
Sau3AI GATC 5 cut(s) 395, 612, 701, 872, 955
Sau96I GGNCC 4 cut(s) 384, 598, 856, 909
ScaI AGTACT 1 cut(s) 744
ScrFI CCNGG 4 cut(s) 168, 180, 388, 726
SduI GDGCHC 1 cut(s) 353
SinI GGWCC 3 cut(s) 384, 598, 909
SmiMI CAYNNNNRTG 2 cut(s) 193, 213
SsiI CCGC 2 cut(s) 959, 1138
SspI AATATT 1 cut(s) 1113
SspMI CTAG 3 cut(s) 107, 500, 885
StyD4I CCNGG 4 cut(s) 166, 178, 386, 724
StyI CCWWGG 1 cut(s) 378
TaaI ACNGT 7 cut(s) 192, 259, 439, 844, 985, 1078, 1166
TaqI TCGA 2 cut(s) 140, 284
TatI WGTACW 2 cut(s) 604, 742
TfiI GAWTC 4 cut(s) 86, 834, 881, 1156
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TscAI CASTG 5 cut(s) 195, 368, 444, 583, 1140
TseFI GTSAC 2 cut(s) 402, 1160
TseI GCWGC 2 cut(s) 29, 968
Tsp45I GTSAC 2 cut(s) 402, 1160
TspDTI ATGAA 5 cut(s) 197, 435, 546, 647, 672
TspGWI ACGGA 1 cut(s) 448
TspRI CASTG 5 cut(s) 195, 368, 444, 583, 1140
VpaK11BI GGWCC 3 cut(s) 384, 598, 909
XagI CCTNNNNNAGG 1 cut(s) 623
XapI RAATTY 4 cut(s) 160, 280, 482, 669
XceI RCATGY 1 cut(s) 1174
XmnI GAANNNNTTC 1 cut(s) 328
XspI CTAG 3 cut(s) 107, 500, 885
ZrmI AGTACT 1 cut(s) 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.