Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000660.1

Orthogroup ID

OG0001753

Physical Location & Seq

Genomic Coordinates Reverse (-)

23060 .. 24977

Gene Structure 1918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000660.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

atggcttcttctaagcaggttcaggtcacagcttgtattctatggcttctgttcctcacacttccatgttcttcttccactgaatcactctatcagcattctttggttattggtgaaaatgctactttaggattgtctcatggtatgccagtcggaaaatctcccggttctaagcctggcgcttcggtgttgtgtgaacgagttcttatctatggattgtcaaggcttaaacatccggataagtttggcaatacggtaatgaagcttctcccaactggtcggaagaattcactcgcaattttcgtcttgtcatctgtggttggtttgggatcttttctcctccgctacatcccaggactactaagttcagtactcaccgagcttggaattagtgaggatatgtataatgttttggccatatttcttctggcttttgtttttccggctggagcatcgttgggattctggacagttcgtaaaatggccttgaacgaagatggatcaattgattctagcatatctctgtttgttttgtggaccattcgcttcgtagctgttatttttctttcacagagttccagcgatcaactactggcagcaagagctataatgcccaacccatcaaggagatccacatgcctcaaaccaagagaccaccgccatagatctgcgttgcaaccatccagcactaccgccccgctccgacgaccgacgacgactcccttccacaaccataaaactcagaaaacaaggccaacgaaccagaaaaggcaacactatgcccatcccaaattagagaccgctgcctctgtgcacgatgcaaccgcatcagattctggcagaaagacgtctccacccacccgcccagccaacctgccaccaacactcaccaatcaacaaagagtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NEMP

Protein Analysis

302

Amino Acids

32.95

Weight (kDa)

10.31

Isoelectric Point (pI)

54.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67610 AT5G67610
fragaria_vesca	FvH4_1g17850 FvH4_1g17850 FvH4_1g17850 FvH4_1g17850 FvH4_1g17850 FvH4_1g17850 FvH4_1g17850 FvH4_1g17850 FvH4_1g17850
malus_domestica	MD02G1187300.v1.1 MD02G1187400.v1.1 MD15G1298300.v1.1
prunus_persica	Prupe.6G219400_v2.0.a1 Prupe.6G219400_v2.0.a1 Prupe.6G219400_v2.0.a1
pyrus_communis	pycom15g26110
rosa_chinensis	RchiOBHm_Chr2g0108281 RchiOBHm_Chr5g0059801 RchiOBHm_Chr5g0059811 RchiOBHm_Chr5g0059831
rosa_laevigata	RLG00000017659
rosa_multiflora	Rmu_co8406947.1_g000001 Rmu_sc0000660.1_g000013 Rmu_sc0000660.1_g000014 Rmu_sc0002372.1_g000006 Rmu_sc0005742.1_g000004
rosa_roxburghii	Rroxscaffold_1G00020760 Rroxscaffold_2G00135320
rosa_rugosa	Rorug02G0152100 Rorug05G0326100 Rorug05G0326200
rosa_samantha	Rh2AG200600 Rh2BG213300 Rh2CG205300 Rh2DG208100 Rh5AG390700 Rh5BG402200 Rh5BG402300 Rh5BG402500 Rh5CG426200 Rh5CG426300 Rh5CG426400 Rh5DG418600
rosa_wichuraiana	Rw2G015960 Rw2G015970 Rw5G036750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	851
Acc36I	ACCTGC	2 cut(s)	7, 882
AccBSI	CCGCTC	1 cut(s)	700
AccIII	TCCGGA	1 cut(s)	235
AciI	CCGC	7 cut(s)	343, 658, 693, 698, 801, 825, 862
AclWI	GGATC	3 cut(s)	337, 508, 624
AcoI	YGGCCR	1 cut(s)	414
AcsI	RAATTY	1 cut(s)	286
AcyI	GRCGYC	1 cut(s)	848
AfaI	GTAC	1 cut(s)	372
AgsI	TTSAA	1 cut(s)	490
AjnI	CCWGG	2 cut(s)	175, 352
AluBI	AGCT	5 cut(s)	32, 265, 382, 554, 605
AluI	AGCT	5 cut(s)	32, 265, 382, 554, 605
Alw21I	GWGCWC	1 cut(s)	816
Alw26I	GTCTC	4 cut(s)	141, 645, 791, 855
Alw44I	GTGCAC	1 cut(s)	812
AlwI	GGATC	3 cut(s)	337, 508, 624
AlwNI	CAGNNNCTG	1 cut(s)	836
Aor13HI	TCCGGA	1 cut(s)	235
AoxI	GGCC	3 cut(s)	414, 483, 752
ApaLI	GTGCAC	1 cut(s)	812
ApeKI	GCWGC	2 cut(s)	596, 803
ApoI	RAATTY	1 cut(s)	286
Asp700I	GAANNNNTTC	1 cut(s)	201
AspLEI	GCGC	1 cut(s)	182
AspS9I	GGNCC	1 cut(s)	537
AsuC2I	CCSGG	1 cut(s)	165
AsuHPI	GGTGA	3 cut(s)	125, 367, 880
AvaII	GGWCC	1 cut(s)	537
BaeGI	GKGCMC	1 cut(s)	816
BalI	TGGCCA	1 cut(s)	416
BarI	GAAGNNNNNNTAC	2 cut(s)	249, 281
Bbv12I	GWGCWC	1 cut(s)	816
BbvI	GCAGC	2 cut(s)	608, 790
BccI	CCATC	4 cut(s)	491, 628, 688, 792
BciT130I	CCWGG	2 cut(s)	177, 354
BcnI	CCSGG	1 cut(s)	165
BcoDI	GTCTC	4 cut(s)	141, 645, 791, 855
BfaI	CTAG	2 cut(s)	513, 907
BfoI	RGCGCY	1 cut(s)	183
BfuAI	ACCTGC	2 cut(s)	7, 882
BglII	AGATCT	1 cut(s)	665
BisI	GCNGC	2 cut(s)	597, 804
BlsI	GCNGC	2 cut(s)	598, 805
BmcAI	AGTACT	1 cut(s)	372
Bme1390I	CCNGG	3 cut(s)	165, 177, 354
Bme18I	GGWCC	1 cut(s)	537
BmgT120I	GGNCC	1 cut(s)	537
BmrFI	CCNGG	3 cut(s)	165, 177, 354
BmsI	GCATC	3 cut(s)	461, 808, 836
BpmI	CTGGAG	1 cut(s)	468
BpuMI	CCSGG	1 cut(s)	165
BsaHI	GRCGYC	1 cut(s)	848
BsaI	GGTCTC	2 cut(s)	645, 791
BsaJI	CCNNGG	1 cut(s)	352
BsaWI	WCCGGW	1 cut(s)	235
BsaXI	ACNNNNNCTCC	2 cut(s)	703, 733
Bse1I	ACTGG	3 cut(s)	149, 280, 597
BseAI	TCCGGA	1 cut(s)	235
BseBI	CCWGG	2 cut(s)	177, 354
BseDI	CCNNGG	1 cut(s)	352
BseGI	GGATG	4 cut(s)	232, 348, 680, 784
BseMII	CTCAG	1 cut(s)	755
BseNI	ACTGG	3 cut(s)	149, 280, 597
BseRI	GAGGAG	1 cut(s)	329
BseSI	GKGCMC	1 cut(s)	816
BseXI	GCAGC	2 cut(s)	608, 790
BseYI	CCCAGC	1 cut(s)	865
Bsh1285I	CGRYCG	1 cut(s)	710
BshFI	GGCC	3 cut(s)	416, 485, 754
BsiEI	CGRYCG	1 cut(s)	710
BsiHKAI	GWGCWC	1 cut(s)	816
BsiSI	CCGG	3 cut(s)	165, 236, 443
BsmAI	GTCTC	4 cut(s)	141, 645, 791, 855
BsmBI	CGTCTC	1 cut(s)	855
BsmI	GAATGC	1 cut(s)	97
BsnI	GGCC	3 cut(s)	416, 485, 754
Bso31I	GGTCTC	2 cut(s)	645, 791
Bsp1286I	GDGCHC	1 cut(s)	816
Bsp13I	TCCGGA	1 cut(s)	235
Bsp143I	GATC	5 cut(s)	329, 500, 583, 629, 665
BspACI	CCGC	7 cut(s)	343, 658, 693, 698, 801, 825, 862
BspANI	GGCC	3 cut(s)	416, 485, 754
BspCNI	CTCAG	1 cut(s)	754
BspEI	TCCGGA	1 cut(s)	235
BspMI	ACCTGC	2 cut(s)	7, 882
BspPI	GGATC	3 cut(s)	337, 508, 624
BspTNI	GGTCTC	2 cut(s)	645, 791
BsrBI	CCGCTC	1 cut(s)	700
BsrI	ACTGG	3 cut(s)	149, 280, 597
BssECI	CCNNGG	1 cut(s)	352
BssMI	GATC	5 cut(s)	329, 500, 583, 629, 665
BssNI	GRCGYC	1 cut(s)	848
Bst2UI	CCWGG	2 cut(s)	177, 354
Bst4CI	ACNGT	2 cut(s)	256, 472
BstACI	GRCGYC	1 cut(s)	848
BstDEI	CTNAG	4 cut(s)	12, 171, 362, 741
BstF5I	GGATG	4 cut(s)	232, 348, 680, 784
BstH2I	RGCGCY	1 cut(s)	183
BstHHI	GCGC	1 cut(s)	182
BstKTI	GATC	5 cut(s)	332, 503, 586, 632, 668
BstMAI	GTCTC	4 cut(s)	141, 645, 791, 855
BstMBI	GATC	5 cut(s)	329, 500, 583, 629, 665
BstMCI	CGRYCG	1 cut(s)	710
BstMWI	GCNNNNNNNGC	1 cut(s)	602
BstNI	CCWGG	2 cut(s)	177, 354
BstNSI	RCATGY	1 cut(s)	639
BstSCI	CCNGG	3 cut(s)	163, 175, 352
BstSLI	GKGCMC	1 cut(s)	816
BstV1I	GCAGC	2 cut(s)	608, 790
BstX2I	RGATCY	3 cut(s)	329, 629, 665
BstYI	RGATCY	3 cut(s)	329, 629, 665
BsuRI	GGCC	3 cut(s)	416, 485, 754
BtsCI	GGATG	4 cut(s)	232, 348, 680, 784
BtsIMutI	CAGTG	1 cut(s)	78
BveI	ACCTGC	2 cut(s)	7, 882
CaiI	CAGNNNCTG	1 cut(s)	836
CfoI	GCGC	1 cut(s)	182
Cfr13I	GGNCC	1 cut(s)	537
Csp6I	GTAC	1 cut(s)	371
CviAII	CATG	3 cut(s)	66, 140, 636
CviQI	GTAC	1 cut(s)	371
DdeI	CTNAG	4 cut(s)	12, 171, 362, 741
DpnI	GATC	5 cut(s)	331, 502, 585, 631, 667
DpnII	GATC	5 cut(s)	329, 500, 583, 629, 665
EaeI	YGGCCR	1 cut(s)	414
Eco31I	GGTCTC	2 cut(s)	645, 791
Eco47I	GGWCC	1 cut(s)	537
EcoRI	GAATTC	1 cut(s)	286
EcoRII	CCWGG	2 cut(s)	175, 352
Esp3I	CGTCTC	1 cut(s)	855
FaeI	CATG	3 cut(s)	69, 143, 639
FatI	CATG	3 cut(s)	65, 139, 635
FauI	CCCGC	2 cut(s)	705, 869
Fnu4HI	GCNGC	2 cut(s)	597, 804
FokI	GGATG	4 cut(s)	219, 335, 667, 771
Fsp4HI	GCNGC	2 cut(s)	597, 804
FspBI	CTAG	2 cut(s)	513, 907
GlaI	GCGC	1 cut(s)	181
GluI	GCNGC	2 cut(s)	597, 804
GsaI	CCCAGC	1 cut(s)	869
GsuI	CTGGAG	1 cut(s)	468
HaeII	RGCGCY	1 cut(s)	183
HaeIII	GGCC	3 cut(s)	416, 485, 754
HapII	CCGG	3 cut(s)	165, 236, 443
HhaI	GCGC	1 cut(s)	182
Hin1I	GRCGYC	1 cut(s)	848
Hin1II	CATG	3 cut(s)	69, 143, 639
Hin6I	GCGC	1 cut(s)	180
HinP1I	GCGC	1 cut(s)	180
HindIII	AAGCTT	1 cut(s)	263
HinfI	GANTC	6 cut(s)	83, 462, 509, 718, 833, 903
HpaII	CCGG	3 cut(s)	165, 236, 443
HphI	GGTGA	3 cut(s)	125, 367, 880
Hpy166II	GTNNAC	3 cut(s)	197, 537, 814
Hpy188I	TCNGA	5 cut(s)	155, 282, 704, 744, 832
Hpy188III	TCNNGA	2 cut(s)	236, 466
Hpy8I	GTNNAC	3 cut(s)	197, 537, 814
Hpy99I	CGWCG	3 cut(s)	708, 715, 718
HpyAV	CCTTC	1 cut(s)	733
HpyCH4III	ACNGT	2 cut(s)	256, 472
HpyCH4IV	ACGT	1 cut(s)	848
HpyCH4V	TGCA	3 cut(s)	676, 814, 821
HpyF10VI	GCNNNNNNNGC	1 cut(s)	602
HpyF3I	CTNAG	4 cut(s)	12, 171, 362, 741
HpySE526I	ACGT	1 cut(s)	848
Hsp92I	GRCGYC	1 cut(s)	848
Hsp92II	CATG	3 cut(s)	69, 143, 639
HspAI	GCGC	1 cut(s)	180
Kpn2I	TCCGGA	1 cut(s)	235
Kzo9I	GATC	5 cut(s)	329, 500, 583, 629, 665
LmnI	GCTCC	2 cut(s)	449, 705
Lsp1109I	GCAGC	2 cut(s)	608, 790
LweI	GCATC	3 cut(s)	461, 808, 836
MaeI	CTAG	2 cut(s)	513, 907
MaeII	ACGT	1 cut(s)	848
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	5 cut(s)	331, 502, 585, 631, 667
MbiI	CCGCTC	1 cut(s)	700
MboI	GATC	5 cut(s)	329, 500, 583, 629, 665
MboII	GAAGA	5 cut(s)	63, 66, 295, 416, 506
MfeI	CAATTG	1 cut(s)	504
MflI	RGATCY	3 cut(s)	329, 629, 665
MhlI	GDGCHC	1 cut(s)	816
MlsI	TGGCCA	1 cut(s)	416
MluCI	AATT	5 cut(s)	286, 297, 387, 504, 791
MluNI	TGGCCA	1 cut(s)	416
MlyI	GAGTC	1 cut(s)	712
MmeI	TCCRAC	3 cut(s)	133, 260, 727
MnlI	CCTC	5 cut(s)	65, 350, 388, 650, 817
Mox20I	TGGCCA	1 cut(s)	416
MroI	TCCGGA	1 cut(s)	235
MroXI	GAANNNNTTC	1 cut(s)	201
MscI	TGGCCA	1 cut(s)	416
MseI	TTAA	1 cut(s)	228
MslI	CAYNNNNRTG	1 cut(s)	64
Msp20I	TGGCCA	1 cut(s)	416
MspA1I	CMGCKG	1 cut(s)	803
MspI	CCGG	3 cut(s)	165, 236, 443
MspR9I	CCNGG	3 cut(s)	165, 177, 354
MunI	CAATTG	1 cut(s)	504
Mva1269I	GAATGC	1 cut(s)	97
MvaI	CCWGG	2 cut(s)	177, 354
MwoI	GCNNNNNNNGC	1 cut(s)	602
NciI	CCSGG	1 cut(s)	165
NdeII	GATC	5 cut(s)	329, 500, 583, 629, 665
NlaIII	CATG	3 cut(s)	69, 143, 639
NmuCI	GTSAC	1 cut(s)	25
NspI	RCATGY	1 cut(s)	639
PcsI	WCGNNNNNNNCGW	1 cut(s)	300
PctI	GAATGC	1 cut(s)	97
PdmI	GAANNNNTTC	1 cut(s)	201
PfeI	GAWTC	4 cut(s)	83, 462, 509, 833
PkrI	GCNGC	2 cut(s)	598, 805
PleI	GAGTC	1 cut(s)	712
PpsI	GAGTC	1 cut(s)	712
Psp6I	CCWGG	2 cut(s)	175, 352
PspFI	CCCAGC	1 cut(s)	865
PspGI	CCWGG	2 cut(s)	175, 352
PspPI	GGNCC	1 cut(s)	537
PstNI	CAGNNNCTG	1 cut(s)	836
PsuI	RGATCY	3 cut(s)	329, 629, 665
RsaI	GTAC	1 cut(s)	372
RsaNI	GTAC	1 cut(s)	371
RseI	CAYNNNNRTG	1 cut(s)	64
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	2 cut(s)	597, 804
Sau3AI	GATC	5 cut(s)	329, 500, 583, 629, 665
Sau96I	GGNCC	1 cut(s)	537
ScaI	AGTACT	1 cut(s)	372
SchI	GAGTC	1 cut(s)	712
ScrFI	CCNGG	3 cut(s)	165, 177, 354
SduI	GDGCHC	1 cut(s)	816
SetI	ASST	9 cut(s)	21, 27, 34, 267, 384, 556, 607, 851, 876
SfaNI	GCATC	3 cut(s)	461, 808, 836
SinI	GGWCC	1 cut(s)	537
SmiMI	CAYNNNNRTG	1 cut(s)	64
Sse9I	AATT	5 cut(s)	286, 297, 387, 504, 791
SsiI	CCGC	7 cut(s)	343, 658, 693, 698, 801, 825, 862
SspMI	CTAG	2 cut(s)	513, 907
StyD4I	CCNGG	3 cut(s)	163, 175, 352
TaaI	ACNGT	2 cut(s)	256, 472
TaiI	ACGT	1 cut(s)	851
TaqII	GACCGA	1 cut(s)	724
TasI	AATT	5 cut(s)	286, 297, 387, 504, 791
TatI	WGTACW	1 cut(s)	370
TfiI	GAWTC	4 cut(s)	83, 462, 509, 833
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	1 cut(s)	85
TseFI	GTSAC	1 cut(s)	25
TseI	GCWGC	2 cut(s)	596, 803
Tsp45I	GTSAC	1 cut(s)	25
TspDTI	ATGAA	1 cut(s)	275
TspRI	CASTG	1 cut(s)	85
VneI	GTGCAC	1 cut(s)	812
VpaK11BI	GGWCC	1 cut(s)	537
XapI	RAATTY	1 cut(s)	286
XceI	RCATGY	1 cut(s)	639
XcmI	CCANNNNNNNNNTGG	1 cut(s)	424
XmnI	GAANNNNTTC	1 cut(s)	201
XspI	CTAG	2 cut(s)	513, 907
ZraI	GACGTC	1 cut(s)	849
ZrmI	AGTACT	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.