Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005742.1

Orthogroup ID

OG0001753

Physical Location & Seq

Genomic Coordinates Reverse (-)

7391 .. 11084

Gene Structure 3694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005742.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1602 bp

atggcttcttctaagccggttcgggtcgctgcgtgcattctatggcttctgttcctcacgcttccctcttcttcttcttcctctgaatcgccgactgagtattctctagttattggtgagaatgctactctgcaattatcgaatggtgtgctggtgcaaaattctcctggtgctaagcctggaacttcactgttgtgtggaagagttcatgtatgtggattgtcaaggcttaaatatctggagaagtttgccgacacggtgaaggtgaagatatcaacaaattcgagctttcggatacggccttttgaggtttgcttccacagaaatacttctcgtgggataggaatgtgccctcacagccagtgggagaaagtttccaaggggtcctggtctggatccatgtcaccttatgagcgcaaactcttagatatacggacagtgggttcatccttagagagttttgaggtgtcccttgaagaagaattttttatatctcgcctagtattttttgtgtctggtgtaatcttgatgagtttggcaccttctctgagcaattcattggtattctattacagcagtggaatggcaataggggtggttcttgtactattgatcgtcctttttcaggggatgaagcttctcccaacaggtcggaagagttcgctcggaatttttttgttttcatctgtggttggtttgggatcttttctcctcagctacatcccagggctattgcgttcagtactaacagagcttggaattagcgaagagatgtataatcctttggctatatttcttctggcttttatttttctggctggagcatggttgggattctggacagttcgtaaaatggccctgagagaagatggatcaattgattctagcacatctctgtttgttttgtggaccatccggtttgtagctcttcttctgctttcacagagttctggtgatccgctactggcagcaggagccataacggtccccttgctcccttttatagtgaggaaaattgctataatgtttggagttatactctcttttatgaggaaaataaccatagcatttggaacagtagtctcttttatagcgaggacaatcgctataatatttggaggtgtaatctcttcagtgcgggaaatcttcagatggattcgtcaccgtcgcatgttcaggaaattgttgaaatcacccaaaaagaagaagagcagaagatcagagattcctgattctccaccttctgaatatgcacctgatgaggtcatcaacgagtttcaaagcgatgacgactataagttcccgaggcccggatccagaaactctaccctggcttcatgtatttcatctggcctaggttctagaagtgcatcaccatcagaaaggttatacccttcttatatccacactacacctgagaggagagcggtgccaagacatgagtgggaaagtatcaccagacacacgacggagaaagccttggaagaacttgcttcttcacctgattttggcaagtgggtagttgcaaatgctgatagaatcagtatcaccccactcagcagcagaaagactgatgagcagagccgtagctggttcttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NEMP

Protein Analysis

533

Amino Acids

59.16

Weight (kDa)

9.75

Isoelectric Point (pI)

55.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67610 AT5G67610
fragaria_vesca	FvH4_1g17850 FvH4_1g17850 FvH4_1g17850 FvH4_1g17850 FvH4_1g17850 FvH4_1g17850 FvH4_1g17850 FvH4_1g17850 FvH4_1g17850
malus_domestica	MD02G1187300.v1.1 MD02G1187400.v1.1 MD15G1298300.v1.1
prunus_persica	Prupe.6G219400_v2.0.a1 Prupe.6G219400_v2.0.a1 Prupe.6G219400_v2.0.a1
pyrus_communis	pycom15g26110
rosa_chinensis	RchiOBHm_Chr2g0108281 RchiOBHm_Chr5g0059801 RchiOBHm_Chr5g0059811 RchiOBHm_Chr5g0059831
rosa_laevigata	RLG00000017659
rosa_multiflora	Rmu_co8406947.1_g000001 Rmu_sc0000660.1_g000013 Rmu_sc0000660.1_g000014 Rmu_sc0002372.1_g000006 Rmu_sc0005742.1_g000004
rosa_roxburghii	Rroxscaffold_1G00020760 Rroxscaffold_2G00135320
rosa_rugosa	Rorug02G0152100 Rorug05G0326100 Rorug05G0326200
rosa_samantha	Rh2AG200600 Rh2BG213300 Rh2CG205300 Rh2DG208100 Rh5AG390700 Rh5BG402200 Rh5BG402300 Rh5BG402500 Rh5CG426200 Rh5CG426300 Rh5CG426400 Rh5DG418600
rosa_wichuraiana	Rw2G015960 Rw2G015970 Rw5G036750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	538, 1429
AccBSI	CCGCTC	1 cut(s)	1427
AciI	CCGC	3 cut(s)	959, 1138, 1427
AclWI	GGATC	7 cut(s)	390, 403, 709, 880, 950, 1308, 1321
AcsI	RAATTY	4 cut(s)	160, 280, 482, 669
AcuI	CTGAAG	2 cut(s)	1116, 1132
AfaI	GTAC	2 cut(s)	606, 744
AfiI	CCNNNNNNNGG	3 cut(s)	625, 1310, 1508
AgsI	TTSAA	3 cut(s)	476, 1189, 1280
AjnI	CCWGG	5 cut(s)	166, 178, 386, 724, 1329
AleI	CACNNNNGTG	1 cut(s)	193
AloI	GAACNNNNNNTCC	2 cut(s)	427, 459
AluBI	AGCT	6 cut(s)	288, 637, 717, 754, 926, 1590
AluI	AGCT	6 cut(s)	288, 637, 717, 754, 926, 1590
Alw26I	GTCTC	1 cut(s)	1087
AlwI	GGATC	7 cut(s)	390, 403, 709, 880, 950, 1308, 1321
Ama87I	CYCGRG	1 cut(s)	1303
AoxI	GGCC	4 cut(s)	299, 855, 1307, 1351
ApeKI	GCWGC	3 cut(s)	29, 968, 1560
ApoI	RAATTY	4 cut(s)	160, 280, 482, 669
Asp700I	GAANNNNTTC	1 cut(s)	328
AspA2I	CCTAGG	1 cut(s)	1354
AspLEI	GCGC	1 cut(s)	417
AspS9I	GGNCC	5 cut(s)	384, 856, 909, 985, 1308
AsuC2I	CCSGG	1 cut(s)	1311
AvaI	CYCGRG	1 cut(s)	1303
AvaII	GGWCC	3 cut(s)	384, 909, 985
AvrII	CCTAGG	1 cut(s)	1354
BaeGI	GKGCMC	1 cut(s)	353
BamHI	GGATCC	2 cut(s)	395, 1313
BanI	GGYRCC	2 cut(s)	538, 1429
BarI	GAAGNNNNNNTAC	2 cut(s)	915, 947
BauI	CACGAG	1 cut(s)	333
BbvCI	CCTCAGC	1 cut(s)	713
BbvI	GCAGC	3 cut(s)	16, 980, 1572
BccI	CCATC	4 cut(s)	863, 920, 1146, 1384
BceAI	ACGGC	2 cut(s)	314, 1569
BcgI	CGANNNNNNTGC	2 cut(s)	130, 164
BciT130I	CCWGG	5 cut(s)	168, 180, 388, 726, 1331
BciVI	GTATCC	1 cut(s)	288
BcnI	CCSGG	1 cut(s)	1311
BcoDI	GTCTC	1 cut(s)	1087
BfaI	CTAG	6 cut(s)	107, 500, 885, 1355, 1362, 1600
BfuI	GTATCC	1 cut(s)	288
BisI	GCNGC	3 cut(s)	30, 969, 1561
BlnI	CCTAGG	1 cut(s)	1354
BlpI	GCTNAGC	1 cut(s)	174
BlsI	GCNGC	3 cut(s)	31, 970, 1562
BmcAI	AGTACT	1 cut(s)	744
Bme1390I	CCNGG	6 cut(s)	168, 180, 388, 726, 1311, 1331
Bme18I	GGWCC	3 cut(s)	384, 909, 985
BmeT110I	CYCGRG	1 cut(s)	1303
BmgT120I	GGNCC	5 cut(s)	384, 856, 909, 985, 1308
BmiI	GGNNCC	7 cut(s)	385, 397, 540, 976, 987, 1315, 1431
BmrFI	CCNGG	6 cut(s)	168, 180, 388, 726, 1311, 1331
BmsI	GCATC	1 cut(s)	1379
BplI	GAGNNNNNCTC	2 cut(s)	1023, 1055
BpmI	CTGGAG	2 cut(s)	260, 840
Bpu10I	CCTNAGC	1 cut(s)	713
Bpu1102I	GCTNAGC	1 cut(s)	174
BpuMI	CCSGG	1 cut(s)	1311
BsaJI	CCNNGG	7 cut(s)	378, 724, 725, 1304, 1329, 1354, 1479
BsaWI	WCCGGW	1 cut(s)	915
Bsc4I	CCNNNNNNNGG	3 cut(s)	625, 1310, 1508
Bse118I	RCCGGY	1 cut(s)	16
Bse1I	ACTGG	2 cut(s)	361, 969
BseBI	CCWGG	5 cut(s)	168, 180, 388, 726, 1331
BseDI	CCNNGG	7 cut(s)	378, 724, 725, 1304, 1329, 1354, 1479
BseGI	GGATG	4 cut(s)	446, 636, 720, 912
BseLI	CCNNNNNNNGG	3 cut(s)	625, 1310, 1508
BseMII	CTCAG	6 cut(s)	87, 539, 727, 851, 1407, 1570
BseNI	ACTGG	2 cut(s)	361, 969
BseRI	GAGGAG	2 cut(s)	701, 1435
BseSI	GKGCMC	1 cut(s)	353
BseXI	GCAGC	3 cut(s)	16, 980, 1572
BshFI	GGCC	4 cut(s)	301, 857, 1309, 1353
BshNI	GGYRCC	2 cut(s)	538, 1429
BsiHKCI	CYCGRG	1 cut(s)	1303
BsiSI	CCGG	3 cut(s)	17, 916, 1311
BslFI	GGGAC	2 cut(s)	454, 971
BslI	CCNNNNNNNGG	3 cut(s)	625, 1310, 1508
BsmAI	GTCTC	1 cut(s)	1087
BsmFI	GGGAC	2 cut(s)	454, 971
BsmI	GAATGC	2 cut(s)	36, 127
BsnI	GGCC	4 cut(s)	301, 857, 1309, 1353
BsoBI	CYCGRG	1 cut(s)	1303
Bsp1286I	GDGCHC	1 cut(s)	353
Bsp143I	GATC	7 cut(s)	395, 612, 701, 872, 955, 1217, 1313
Bsp1720I	GCTNAGC	1 cut(s)	174
BspACI	CCGC	3 cut(s)	959, 1138, 1427
BspANI	GGCC	4 cut(s)	301, 857, 1309, 1353
BspCNI	CTCAG	6 cut(s)	88, 540, 726, 852, 1408, 1569
BspLI	GGNNCC	7 cut(s)	385, 397, 540, 976, 987, 1315, 1431
BspPI	GGATC	7 cut(s)	390, 403, 709, 880, 950, 1308, 1321
BspQI	GCTCTTC	2 cut(s)	933, 1202
BspT107I	GGYRCC	2 cut(s)	538, 1429
BsrBI	CCGCTC	1 cut(s)	1427
BsrFI	RCCGGY	1 cut(s)	16
BsrI	ACTGG	2 cut(s)	361, 969
BssAI	RCCGGY	1 cut(s)	16
BssECI	CCNNGG	7 cut(s)	378, 724, 725, 1304, 1329, 1354, 1479
BssMI	GATC	7 cut(s)	395, 612, 701, 872, 955, 1217, 1313
BssSI	CACGAG	1 cut(s)	333
BssT1I	CCWWGG	3 cut(s)	378, 1354, 1479
Bst2BI	CACGAG	1 cut(s)	333
Bst2UI	CCWGG	5 cut(s)	168, 180, 388, 726, 1331
Bst4CI	ACNGT	7 cut(s)	192, 259, 439, 844, 985, 1078, 1166
Bst6I	CTCTTC	7 cut(s)	73, 196, 650, 762, 933, 1135, 1202
BstC8I	GCNNGC	1 cut(s)	34
BstENI	CCTNNNNNAGG	1 cut(s)	623
BstF5I	GGATG	4 cut(s)	446, 636, 720, 912
BstHHI	GCGC	1 cut(s)	417
BstKTI	GATC	7 cut(s)	398, 615, 704, 875, 958, 1220, 1316
BstMAI	GTCTC	1 cut(s)	1087
BstMBI	GATC	7 cut(s)	395, 612, 701, 872, 955, 1217, 1313
BstMWI	GCNNNNNNNGC	2 cut(s)	357, 974
BstNI	CCWGG	5 cut(s)	168, 180, 388, 726, 1331
BstNSI	RCATGY	1 cut(s)	1174
BstSCI	CCNGG	6 cut(s)	166, 178, 386, 724, 1309, 1329
BstSLI	GKGCMC	1 cut(s)	353
BstV1I	GCAGC	3 cut(s)	16, 980, 1572
BstX2I	RGATCY	3 cut(s)	395, 701, 1313
BstYI	RGATCY	3 cut(s)	395, 701, 1313
BsuI	GTATCC	1 cut(s)	288
BsuRI	GGCC	4 cut(s)	301, 857, 1309, 1353
BtgZI	GCGATG	1 cut(s)	1299
BtsCI	GGATG	4 cut(s)	446, 636, 720, 912
BtsI	GCAGTG	1 cut(s)	583
BtsIMutI	CAGTG	5 cut(s)	188, 368, 444, 583, 1140
Cac8I	GCNNGC	1 cut(s)	34
CfoI	GCGC	1 cut(s)	417
Cfr10I	RCCGGY	1 cut(s)	16
Cfr13I	GGNCC	5 cut(s)	384, 856, 909, 985, 1308
Csp6I	GTAC	2 cut(s)	605, 743
CspCI	CAANNNNNGTGG	2 cut(s)	576, 611
CviAII	CATG	6 cut(s)	209, 400, 825, 1171, 1338, 1439
CviQI	GTAC	2 cut(s)	605, 743
DpnI	GATC	7 cut(s)	397, 614, 703, 874, 957, 1219, 1315
DpnII	GATC	7 cut(s)	395, 612, 701, 872, 955, 1217, 1313
Eam1104I	CTCTTC	7 cut(s)	73, 196, 650, 762, 933, 1135, 1202
EarI	CTCTTC	7 cut(s)	73, 196, 650, 762, 933, 1135, 1202
Eco130I	CCWWGG	3 cut(s)	378, 1354, 1479
Eco32I	GATATC	1 cut(s)	273
Eco47I	GGWCC	3 cut(s)	384, 909, 985
Eco57I	CTGAAG	2 cut(s)	1116, 1132
Eco88I	CYCGRG	1 cut(s)	1303
EcoNI	CCTNNNNNAGG	1 cut(s)	623
EcoO109I	RGGNCCY	1 cut(s)	384
EcoRII	CCWGG	5 cut(s)	166, 178, 386, 724, 1329
EcoRV	GATATC	1 cut(s)	273
EcoT14I	CCWWGG	3 cut(s)	378, 1354, 1479
ErhI	CCWWGG	3 cut(s)	378, 1354, 1479
FaeI	CATG	6 cut(s)	212, 403, 828, 1174, 1341, 1442
FaqI	GGGAC	2 cut(s)	454, 971
FatI	CATG	6 cut(s)	208, 399, 824, 1170, 1337, 1438
FauI	CCCGC	1 cut(s)	1131
Fnu4HI	GCNGC	3 cut(s)	30, 969, 1561
FokI	GGATG	4 cut(s)	433, 643, 707, 899
Fsp4HI	GCNGC	3 cut(s)	30, 969, 1561
FspBI	CTAG	6 cut(s)	107, 500, 885, 1355, 1362, 1600
GlaI	GCGC	1 cut(s)	416
GluI	GCNGC	3 cut(s)	30, 969, 1561
GsuI	CTGGAG	2 cut(s)	260, 840
HaeIII	GGCC	4 cut(s)	301, 857, 1309, 1353
HapII	CCGG	3 cut(s)	17, 916, 1311
HhaI	GCGC	1 cut(s)	417
Hin1II	CATG	6 cut(s)	212, 403, 828, 1174, 1341, 1442
Hin6I	GCGC	1 cut(s)	415
HinP1I	GCGC	1 cut(s)	415
HindIII	AAGCTT	1 cut(s)	635
HinfI	GANTC	7 cut(s)	86, 834, 881, 1156, 1225, 1232, 1539
HpaII	CCGG	3 cut(s)	17, 916, 1311
Hpy166II	GTNNAC	1 cut(s)	909
Hpy188I	TCNGA	9 cut(s)	85, 294, 549, 654, 668, 1151, 1222, 1246, 1381
Hpy188III	TCNNGA	9 cut(s)	239, 393, 526, 838, 1177, 1229, 1303, 1317, 1362
Hpy8I	GTNNAC	1 cut(s)	909
Hpy99I	CGWCG	2 cut(s)	1170, 1471
HpyAV	CCTTC	4 cut(s)	256, 552, 1251, 1404
HpyCH4III	ACNGT	7 cut(s)	192, 259, 439, 844, 985, 1078, 1166
HpyCH4V	TGCA	6 cut(s)	36, 133, 157, 1253, 1370, 1526
HpyF10VI	GCNNNNNNNGC	2 cut(s)	357, 974
Hsp92II	CATG	6 cut(s)	212, 403, 828, 1174, 1341, 1442
HspAI	GCGC	1 cut(s)	415
Kzo9I	GATC	7 cut(s)	395, 612, 701, 872, 955, 1217, 1313
LguI	GCTCTTC	2 cut(s)	933, 1202
LmnI	GCTCC	3 cut(s)	821, 974, 999
Lsp1109I	GCAGC	3 cut(s)	16, 980, 1572
LweI	GCATC	1 cut(s)	1379
MaeI	CTAG	6 cut(s)	107, 500, 885, 1355, 1362, 1600
MaeIII	GTNAC	2 cut(s)	402, 1160
MalI	GATC	7 cut(s)	397, 614, 703, 874, 957, 1219, 1315
MbiI	CCGCTC	1 cut(s)	1427
MboI	GATC	7 cut(s)	395, 612, 701, 872, 955, 1217, 1313
MfeI	CAATTG	1 cut(s)	876
MflI	RGATCY	3 cut(s)	395, 701, 1313
MhlI	GDGCHC	1 cut(s)	353
MmeI	TCCRAC	1 cut(s)	632
MroXI	GAANNNNTTC	1 cut(s)	328
MseI	TTAA	1 cut(s)	231
MslI	CAYNNNNRTG	2 cut(s)	193, 213
MspI	CCGG	3 cut(s)	17, 916, 1311
MspR9I	CCNGG	6 cut(s)	168, 180, 388, 726, 1311, 1331
MunI	CAATTG	1 cut(s)	876
Mva1269I	GAATGC	2 cut(s)	36, 127
MvaI	CCWGG	5 cut(s)	168, 180, 388, 726, 1331
MwoI	GCNNNNNNNGC	2 cut(s)	357, 974
NciI	CCSGG	1 cut(s)	1311
NdeII	GATC	7 cut(s)	395, 612, 701, 872, 955, 1217, 1313
NlaIII	CATG	6 cut(s)	212, 403, 828, 1174, 1341, 1442
NlaIV	GGNNCC	7 cut(s)	385, 397, 540, 976, 987, 1315, 1431
NmuCI	GTSAC	2 cut(s)	402, 1160
NspI	RCATGY	1 cut(s)	1174
OliI	CACNNNNGTG	1 cut(s)	193
PasI	CCCWGGG	1 cut(s)	725
PciSI	GCTCTTC	2 cut(s)	933, 1202
PctI	GAATGC	2 cut(s)	36, 127
PdmI	GAANNNNTTC	1 cut(s)	328
PfeI	GAWTC	7 cut(s)	86, 834, 881, 1156, 1225, 1232, 1539
PkrI	GCNGC	3 cut(s)	31, 970, 1562
PpuMI	RGGWCCY	1 cut(s)	384
Psp5II	RGGWCCY	1 cut(s)	384
Psp6I	CCWGG	5 cut(s)	166, 178, 386, 724, 1329
PspGI	CCWGG	5 cut(s)	166, 178, 386, 724, 1329
PspN4I	GGNNCC	7 cut(s)	385, 397, 540, 976, 987, 1315, 1431
PspPI	GGNCC	5 cut(s)	384, 856, 909, 985, 1308
PspPPI	RGGWCCY	1 cut(s)	384
PsuI	RGATCY	3 cut(s)	395, 701, 1313
RsaI	GTAC	2 cut(s)	606, 744
RsaNI	GTAC	2 cut(s)	605, 743
RseI	CAYNNNNRTG	2 cut(s)	193, 213
SapI	GCTCTTC	2 cut(s)	933, 1202
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	3 cut(s)	30, 969, 1561
Sau3AI	GATC	7 cut(s)	395, 612, 701, 872, 955, 1217, 1313
Sau96I	GGNCC	5 cut(s)	384, 856, 909, 985, 1308
ScaI	AGTACT	1 cut(s)	744
ScrFI	CCNGG	6 cut(s)	168, 180, 388, 726, 1311, 1331
SduI	GDGCHC	1 cut(s)	353
SfaNI	GCATC	1 cut(s)	1379
SinI	GGWCC	3 cut(s)	384, 909, 985
SmiMI	CAYNNNNRTG	2 cut(s)	193, 213
SsiI	CCGC	3 cut(s)	959, 1138, 1427
SspI	AATATT	1 cut(s)	1113
SspMI	CTAG	6 cut(s)	107, 500, 885, 1355, 1362, 1600
StyD4I	CCNGG	6 cut(s)	166, 178, 386, 724, 1309, 1329
StyI	CCWWGG	3 cut(s)	378, 1354, 1479
TaaI	ACNGT	7 cut(s)	192, 259, 439, 844, 985, 1078, 1166
TaqI	TCGA	2 cut(s)	140, 284
TatI	WGTACW	2 cut(s)	604, 742
TfiI	GAWTC	7 cut(s)	86, 834, 881, 1156, 1225, 1232, 1539
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TscAI	CASTG	5 cut(s)	195, 368, 444, 583, 1140
TseFI	GTSAC	2 cut(s)	402, 1160
TseI	GCWGC	3 cut(s)	29, 968, 1560
Tsp45I	GTSAC	2 cut(s)	402, 1160
TspDTI	ATGAA	7 cut(s)	197, 435, 546, 647, 672, 1326, 1335
TspGWI	ACGGA	2 cut(s)	448, 1484
TspRI	CASTG	5 cut(s)	195, 368, 444, 583, 1140
VpaK11BI	GGWCC	3 cut(s)	384, 909, 985
XagI	CCTNNNNNAGG	1 cut(s)	623
XapI	RAATTY	4 cut(s)	160, 280, 482, 669
XbaI	TCTAGA	1 cut(s)	1361
XceI	RCATGY	1 cut(s)	1174
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1440
XmaJI	CCTAGG	1 cut(s)	1354
XmnI	GAANNNNTTC	1 cut(s)	328
XspI	CTAG	6 cut(s)	107, 500, 885, 1355, 1362, 1600
ZrmI	AGTACT	1 cut(s)	744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.