Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001753

Physical Location & Seq

Genomic Coordinates Forward (+)

65262706 .. 65263080

Gene Structure 375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG402500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGTACAGGAAATCGTTGAGATCACCCAAAAAGAAGAGCAGAAGATTAGAGATTCCTGATTCTTCGCCTTCTGAATGTGCTCCTAATGAAGTCGTTAACGAGTTTCAGAGCAATGAGGACTATAAGCTACCGATGCCTGGTTCCAGAAACTCTACCTCGGCTTCACGCATTTCACCTGGCCTAGGTTCTAAAAGTGCATCACCATCAGATGGAAGGTTATATCCTTCTTACATCCACACTGCACCTGAAAGGAGAGCAATGACAAAACATGAGTGGGACAGTCTCACTAGACACACAACAGAGAAGGCCTTGGAAGCACTTACTTCTTCTCCTGATTTTGGCAAATGGGTTGTTGCAATGTGTAACCACCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NEMP

Protein Analysis

124

Amino Acids

13.88

Weight (kDa)

9.39

Isoelectric Point (pI)

77.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67610 AT5G67610
fragaria_vesca	FvH4_1g17850 FvH4_1g17850 FvH4_1g17850 FvH4_1g17850 FvH4_1g17850 FvH4_1g17850 FvH4_1g17850 FvH4_1g17850 FvH4_1g17850
malus_domestica	MD02G1187300.v1.1 MD02G1187400.v1.1 MD15G1298300.v1.1
prunus_persica	Prupe.6G219400_v2.0.a1 Prupe.6G219400_v2.0.a1 Prupe.6G219400_v2.0.a1
pyrus_communis	pycom15g26110
rosa_chinensis	RchiOBHm_Chr2g0108281 RchiOBHm_Chr5g0059801 RchiOBHm_Chr5g0059811 RchiOBHm_Chr5g0059831
rosa_laevigata	RLG00000017659
rosa_multiflora	Rmu_co8406947.1_g000001 Rmu_sc0000660.1_g000013 Rmu_sc0000660.1_g000014 Rmu_sc0002372.1_g000006 Rmu_sc0005742.1_g000004
rosa_roxburghii	Rroxscaffold_1G00020760 Rroxscaffold_2G00135320
rosa_rugosa	Rorug02G0152100 Rorug05G0326100 Rorug05G0326200
rosa_samantha	Rh2AG200600 Rh2BG213300 Rh2CG205300 Rh2DG208100 Rh5AG390700 Rh5BG402200 Rh5BG402300 Rh5BG402500 Rh5CG426200 Rh5CG426300 Rh5CG426400 Rh5DG418600
rosa_wichuraiana	Rw2G015960 Rw2G015970 Rw5G036750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	209
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	4 cut(s)	137, 182, 209, 338
AjnI	CCWGG	2 cut(s)	136, 175
AluBI	AGCT	1 cut(s)	127
AluI	AGCT	1 cut(s)	127
Alw21I	GWGCWC	1 cut(s)	82
Alw26I	GTCTC	1 cut(s)	287
AoxI	GGCC	2 cut(s)	178, 306
AspA2I	CCTAGG	1 cut(s)	181
AsuHPI	GGTGA	3 cut(s)	15, 165, 192
AvrII	CCTAGG	1 cut(s)	181
Bbv12I	GWGCWC	1 cut(s)	82
BccI	CCATC	2 cut(s)	203, 211
BciT130I	CCWGG	2 cut(s)	138, 177
BcoDI	GTCTC	1 cut(s)	287
BfaI	CTAG	2 cut(s)	182, 288
BlnI	CCTAGG	1 cut(s)	181
Bme1390I	CCNGG	2 cut(s)	138, 177
BmiI	GGNNCC	1 cut(s)	142
BmrFI	CCNGG	2 cut(s)	138, 177
BmsI	GCATC	2 cut(s)	123, 206
BsaJI	CCNNGG	3 cut(s)	156, 181, 309
BsaXI	ACNNNNNCTCC	2 cut(s)	313, 343
Bsc4I	CCNNNNNNNGG	4 cut(s)	137, 182, 209, 338
Bse3DI	GCAATG	3 cut(s)	118, 264, 363
BseBI	CCWGG	2 cut(s)	138, 177
BseDI	CCNNGG	3 cut(s)	156, 181, 309
BseGI	GGATG	1 cut(s)	231
BseLI	CCNNNNNNNGG	4 cut(s)	137, 182, 209, 338
BseMI	GCAATG	3 cut(s)	118, 264, 363
BsgI	GTGCAG	1 cut(s)	225
BshFI	GGCC	2 cut(s)	180, 308
BsiHKAI	GWGCWC	1 cut(s)	82
BslFI	GGGAC	1 cut(s)	290
BslI	CCNNNNNNNGG	4 cut(s)	137, 182, 209, 338
BsmAI	GTCTC	1 cut(s)	287
BsmFI	GGGAC	1 cut(s)	290
BsnI	GGCC	2 cut(s)	180, 308
Bsp1286I	GDGCHC	1 cut(s)	82
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	1 cut(s)	20
BspANI	GGCC	2 cut(s)	180, 308
BspLI	GGNNCC	1 cut(s)	142
BspQI	GCTCTTC	1 cut(s)	29
BsrDI	GCAATG	3 cut(s)	118, 264, 363
BsrGI	TGTACA	1 cut(s)	3
BssECI	CCNNGG	3 cut(s)	156, 181, 309
BssMI	GATC	1 cut(s)	20
BssT1I	CCWWGG	2 cut(s)	181, 309
Bst2UI	CCWGG	2 cut(s)	138, 177
Bst4CI	ACNGT	1 cut(s)	281
Bst6I	CTCTTC	1 cut(s)	29
BstAUI	TGTACA	1 cut(s)	3
BstDEI	CTNAG	1 cut(s)	372
BstENI	CCTNNNNNAGG	1 cut(s)	180
BstF5I	GGATG	1 cut(s)	231
BstKTI	GATC	1 cut(s)	23
BstMAI	GTCTC	1 cut(s)	287
BstMBI	GATC	1 cut(s)	20
BstMWI	GCNNNNNNNGC	2 cut(s)	133, 314
BstNI	CCWGG	2 cut(s)	138, 177
BstSCI	CCNGG	2 cut(s)	136, 175
BsuRI	GGCC	2 cut(s)	180, 308
BtsCI	GGATG	1 cut(s)	231
BtsI	GCAGTG	1 cut(s)	237
BtsIMutI	CAGTG	1 cut(s)	237
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	1 cut(s)	269
CviJI	RGCY	4 cut(s)	127, 161, 180, 308
CviKI_1	RGCY	4 cut(s)	127, 161, 180, 308
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	372
DpnI	GATC	1 cut(s)	22
DpnII	GATC	1 cut(s)	20
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
Eco130I	CCWWGG	2 cut(s)	181, 309
Eco147I	AGGCCT	1 cut(s)	308
EcoNI	CCTNNNNNAGG	1 cut(s)	180
EcoRII	CCWGG	2 cut(s)	136, 175
EcoT14I	CCWWGG	2 cut(s)	181, 309
ErhI	CCWWGG	2 cut(s)	181, 309
FaeI	CATG	1 cut(s)	272
FaiI	YATR	3 cut(s)	123, 220, 270
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	1 cut(s)	268
FokI	GGATG	1 cut(s)	218
FspBI	CTAG	2 cut(s)	182, 288
HaeIII	GGCC	2 cut(s)	180, 308
Hin1II	CATG	1 cut(s)	272
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HinfI	GANTC	2 cut(s)	52, 59
HpaI	GTTAAC	1 cut(s)	97
HphI	GGTGA	3 cut(s)	15, 165, 192
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	3 cut(s)	73, 108, 208
Hpy188III	TCNNGA	3 cut(s)	56, 144, 332
Hpy8I	GTNNAC	1 cut(s)	97
HpyAV	CCTTC	4 cut(s)	78, 207, 234, 298
HpyCH4III	ACNGT	1 cut(s)	281
HpyCH4V	TGCA	3 cut(s)	197, 242, 356
HpyF10VI	GCNNNNNNNGC	2 cut(s)	133, 314
HpyF3I	CTNAG	1 cut(s)	372
Hsp92II	CATG	1 cut(s)	272
KspAI	GTTAAC	1 cut(s)	97
Kzo9I	GATC	1 cut(s)	20
LguI	GCTCTTC	1 cut(s)	29
LmnI	GCTCC	1 cut(s)	85
LpnPI	CCDG	8 cut(s)	69, 123, 150, 157, 162, 189, 258, 345
LweI	GCATC	2 cut(s)	123, 206
MaeI	CTAG	2 cut(s)	182, 288
MaeIII	GTNAC	1 cut(s)	362
MalI	GATC	1 cut(s)	22
MboI	GATC	1 cut(s)	20
MboII	GAAGA	4 cut(s)	46, 54, 54, 318
MhlI	GDGCHC	1 cut(s)	82
MnlI	CCTC	2 cut(s)	109, 166
MseI	TTAA	1 cut(s)	96
MspR9I	CCNGG	2 cut(s)	138, 177
MvaI	CCWGG	2 cut(s)	138, 177
MwoI	GCNNNNNNNGC	2 cut(s)	133, 314
NdeII	GATC	1 cut(s)	20
NlaIII	CATG	1 cut(s)	272
NlaIV	GGNNCC	1 cut(s)	142
NmeAIII	GCCGAG	1 cut(s)	137
PceI	AGGCCT	1 cut(s)	308
PciSI	GCTCTTC	1 cut(s)	29
PfeI	GAWTC	2 cut(s)	52, 59
PflMI	CCANNNNNTGG	1 cut(s)	209
Psp6I	CCWGG	2 cut(s)	136, 175
PspGI	CCWGG	2 cut(s)	136, 175
PspN4I	GGNNCC	1 cut(s)	142
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SapI	GCTCTTC	1 cut(s)	29
SaqAI	TTAA	1 cut(s)	96
Sau3AI	GATC	1 cut(s)	20
ScrFI	CCNGG	2 cut(s)	138, 177
SduI	GDGCHC	1 cut(s)	82
SetI	ASST	6 cut(s)	129, 158, 178, 187, 218, 247
SfaNI	GCATC	2 cut(s)	123, 206
SseBI	AGGCCT	1 cut(s)	308
SspMI	CTAG	2 cut(s)	182, 288
StuI	AGGCCT	1 cut(s)	308
StyD4I	CCNGG	2 cut(s)	136, 175
StyI	CCWWGG	2 cut(s)	181, 309
TaaI	ACNGT	1 cut(s)	281
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	2 cut(s)	52, 59
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TscAI	CASTG	1 cut(s)	244
TspDTI	ATGAA	1 cut(s)	102
TspRI	CASTG	1 cut(s)	244
Van91I	CCANNNNNTGG	1 cut(s)	209
XagI	CCTNNNNNAGG	1 cut(s)	180
XmaJI	CCTAGG	1 cut(s)	181
XspI	CTAG	2 cut(s)	182, 288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.