Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001753

Physical Location & Seq

Genomic Coordinates Forward (+)

67611440 .. 67617997

Gene Structure 6558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG390700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGTACAGGAAATTGTTGAGATCACCCAAAAAGAAGAGCAGAAGATTAGAGATTCCTGATTCTTCACCTTCTGAATGTGCTCCTAATGAAGTCGTTAACAAGTTTCAGAGCAATGAGGACTATAAGCTACCGAGGCCTGGTTCCAGAAACTCTACCTCGGCTTCACGCATTTCACCTGGCCTAGGTTCTAAAAGTGCATCACCATCAGATGGAAGGTTATATCCTTCTTACATCCACACTGCACCTGAAAGGAGAGCAATGACAAAACATGAGTGGGACAGTCTCACTAGACACACAACAGAGCAGTCCTTGGAAGAACTTGCTTCTTCTCCTGATTTTGGCAAATGGGTTGTTGCAAATGCAGATAGAATCAATGTCAAGAAAGTTGCTGACGATCAATCGGACGGTGCCGACGAGATGGCTGTGGATCTCGATCATGATCCTGGTCGTCTCCCTGGCGAGGAATTCGGAGGAGACCTTGAAGAGGAGACGGTGGTTCCAAGAGAGAGAGAAGAAGAAGTCGGCGCCGGCAGTGTGTGTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NEMP

Protein Analysis

181

Amino Acids

20.04

Weight (kDa)

5.23

Isoelectric Point (pI)

70.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67610 AT5G67610
fragaria_vesca	FvH4_1g17850 FvH4_1g17850 FvH4_1g17850 FvH4_1g17850 FvH4_1g17850 FvH4_1g17850 FvH4_1g17850 FvH4_1g17850 FvH4_1g17850
malus_domestica	MD02G1187300.v1.1 MD02G1187400.v1.1 MD15G1298300.v1.1
prunus_persica	Prupe.6G219400_v2.0.a1 Prupe.6G219400_v2.0.a1 Prupe.6G219400_v2.0.a1
pyrus_communis	pycom15g26110
rosa_chinensis	RchiOBHm_Chr2g0108281 RchiOBHm_Chr5g0059801 RchiOBHm_Chr5g0059811 RchiOBHm_Chr5g0059831
rosa_laevigata	RLG00000017659
rosa_multiflora	Rmu_co8406947.1_g000001 Rmu_sc0000660.1_g000013 Rmu_sc0000660.1_g000014 Rmu_sc0002372.1_g000006 Rmu_sc0005742.1_g000004
rosa_roxburghii	Rroxscaffold_1G00020760 Rroxscaffold_2G00135320
rosa_rugosa	Rorug02G0152100 Rorug05G0326100 Rorug05G0326200
rosa_samantha	Rh2AG200600 Rh2BG213300 Rh2CG205300 Rh2DG208100 Rh5AG390700 Rh5BG402200 Rh5BG402300 Rh5BG402500 Rh5CG426200 Rh5CG426300 Rh5CG426400 Rh5DG418600
rosa_wichuraiana	Rw2G015960 Rw2G015970 Rw5G036750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	407, 524
AccB7I	CCANNNNNTGG	1 cut(s)	209
AclWI	GGATC	2 cut(s)	434, 435
AcsI	RAATTY	1 cut(s)	464
AcyI	GRCGYC	1 cut(s)	525
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	6 cut(s)	137, 182, 209, 338, 460, 484
AgsI	TTSAA	1 cut(s)	482
AjnI	CCWGG	4 cut(s)	136, 175, 442, 454
AluBI	AGCT	1 cut(s)	127
AluI	AGCT	1 cut(s)	127
Alw21I	GWGCWC	1 cut(s)	82
Alw26I	GTCTC	4 cut(s)	287, 455, 468, 482
AlwI	GGATC	2 cut(s)	434, 435
AoxI	GGCC	2 cut(s)	134, 178
ApoI	RAATTY	1 cut(s)	464
AspA2I	CCTAGG	1 cut(s)	181
AspLEI	GCGC	1 cut(s)	527
AsuHPI	GGTGA	4 cut(s)	15, 57, 165, 192
AvrII	CCTAGG	1 cut(s)	181
BanI	GGYRCC	2 cut(s)	407, 524
Bbv12I	GWGCWC	1 cut(s)	82
BccI	CCATC	3 cut(s)	203, 211, 412
BciT130I	CCWGG	4 cut(s)	138, 177, 444, 456
BcoDI	GTCTC	4 cut(s)	287, 455, 468, 482
BfaI	CTAG	2 cut(s)	182, 288
BfoI	RGCGCY	1 cut(s)	528
BlnI	CCTAGG	1 cut(s)	181
Bme1390I	CCNGG	4 cut(s)	138, 177, 444, 456
BmiI	GGNNCC	4 cut(s)	142, 409, 498, 526
BmrFI	CCNGG	4 cut(s)	138, 177, 444, 456
BmsI	GCATC	1 cut(s)	206
BsaBI	GATNNNNATC	2 cut(s)	432, 438
BsaHI	GRCGYC	1 cut(s)	525
BsaI	GGTCTC	1 cut(s)	468
BsaJI	CCNNGG	5 cut(s)	131, 156, 181, 309, 454
Bsc4I	CCNNNNNNNGG	6 cut(s)	137, 182, 209, 338, 460, 484
Bse118I	RCCGGY	1 cut(s)	527
Bse3DI	GCAATG	2 cut(s)	118, 264
Bse8I	GATNNNNATC	2 cut(s)	432, 438
BseBI	CCWGG	4 cut(s)	138, 177, 444, 456
BseDI	CCNNGG	5 cut(s)	131, 156, 181, 309, 454
BseGI	GGATG	1 cut(s)	231
BseJI	GATNNNNATC	2 cut(s)	432, 438
BseLI	CCNNNNNNNGG	6 cut(s)	137, 182, 209, 338, 460, 484
BseMI	GCAATG	2 cut(s)	118, 264
BseRI	GAGGAG	2 cut(s)	486, 500
BsgI	GTGCAG	1 cut(s)	225
BshFI	GGCC	2 cut(s)	136, 180
BshNI	GGYRCC	2 cut(s)	407, 524
BsiHKAI	GWGCWC	1 cut(s)	82
BsiSI	CCGG	1 cut(s)	528
BslFI	GGGAC	1 cut(s)	290
BslI	CCNNNNNNNGG	6 cut(s)	137, 182, 209, 338, 460, 484
BsmAI	GTCTC	4 cut(s)	287, 455, 468, 482
BsmBI	CGTCTC	2 cut(s)	455, 482
BsmFI	GGGAC	1 cut(s)	290
BsnI	GGCC	2 cut(s)	136, 180
Bso31I	GGTCTC	1 cut(s)	468
Bsp1286I	GDGCHC	1 cut(s)	82
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	5 cut(s)	20, 394, 427, 433, 439
BspANI	GGCC	2 cut(s)	136, 180
BspHI	TCATGA	1 cut(s)	436
BspLI	GGNNCC	4 cut(s)	142, 409, 498, 526
BspPI	GGATC	2 cut(s)	434, 435
BspQI	GCTCTTC	1 cut(s)	29
BspT107I	GGYRCC	2 cut(s)	407, 524
BspTNI	GGTCTC	1 cut(s)	468
BsrDI	GCAATG	2 cut(s)	118, 264
BsrFI	RCCGGY	1 cut(s)	527
BsrGI	TGTACA	1 cut(s)	3
BssAI	RCCGGY	1 cut(s)	527
BssECI	CCNNGG	5 cut(s)	131, 156, 181, 309, 454
BssMI	GATC	5 cut(s)	20, 394, 427, 433, 439
BssNI	GRCGYC	1 cut(s)	525
BssT1I	CCWWGG	2 cut(s)	181, 309
Bst2UI	CCWGG	4 cut(s)	138, 177, 444, 456
Bst4CI	ACNGT	3 cut(s)	281, 407, 493
Bst6I	CTCTTC	2 cut(s)	29, 477
BstACI	GRCGYC	1 cut(s)	525
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	1 cut(s)	529
BstENI	CCTNNNNNAGG	2 cut(s)	180, 482
BstF5I	GGATG	1 cut(s)	231
BstH2I	RGCGCY	1 cut(s)	528
BstHHI	GCGC	1 cut(s)	527
BstKTI	GATC	5 cut(s)	23, 397, 430, 436, 442
BstMAI	GTCTC	4 cut(s)	287, 455, 468, 482
BstMBI	GATC	5 cut(s)	20, 394, 427, 433, 439
BstMWI	GCNNNNNNNGC	1 cut(s)	133
BstNI	CCWGG	4 cut(s)	138, 177, 444, 456
BstSCI	CCNGG	4 cut(s)	136, 175, 442, 454
BstX2I	RGATCY	1 cut(s)	427
BstYI	RGATCY	1 cut(s)	427
BsuRI	GGCC	2 cut(s)	136, 180
BtsCI	GGATG	1 cut(s)	231
BtsI	GCAGTG	2 cut(s)	237, 538
BtsIMutI	CAGTG	2 cut(s)	237, 538
Cac8I	GCNNGC	1 cut(s)	529
CciI	TCATGA	1 cut(s)	436
CfoI	GCGC	1 cut(s)	527
Cfr10I	RCCGGY	1 cut(s)	527
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	2 cut(s)	269, 437
CviJI	RGCY	5 cut(s)	127, 136, 161, 180, 422
CviKI_1	RGCY	5 cut(s)	127, 136, 161, 180, 422
CviQI	GTAC	1 cut(s)	4
DinI	GGCGCC	1 cut(s)	526
DpnI	GATC	5 cut(s)	22, 396, 429, 435, 441
DpnII	GATC	5 cut(s)	20, 394, 427, 433, 439
Eam1104I	CTCTTC	2 cut(s)	29, 477
EarI	CTCTTC	2 cut(s)	29, 477
Eco130I	CCWWGG	2 cut(s)	181, 309
Eco147I	AGGCCT	1 cut(s)	136
Eco31I	GGTCTC	1 cut(s)	468
EcoNI	CCTNNNNNAGG	2 cut(s)	180, 482
EcoRI	GAATTC	1 cut(s)	464
EcoRII	CCWGG	4 cut(s)	136, 175, 442, 454
EcoT14I	CCWWGG	2 cut(s)	181, 309
EgeI	GGCGCC	1 cut(s)	526
EheI	GGCGCC	1 cut(s)	526
ErhI	CCWWGG	2 cut(s)	181, 309
Esp3I	CGTCTC	2 cut(s)	455, 482
FaeI	CATG	2 cut(s)	272, 440
FaiI	YATR	4 cut(s)	123, 220, 270, 438
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	2 cut(s)	268, 436
FokI	GGATG	1 cut(s)	218
FspBI	CTAG	2 cut(s)	182, 288
GlaI	GCGC	1 cut(s)	526
HaeII	RGCGCY	1 cut(s)	528
HaeIII	GGCC	2 cut(s)	136, 180
HapII	CCGG	1 cut(s)	528
HhaI	GCGC	1 cut(s)	527
Hin1I	GRCGYC	1 cut(s)	525
Hin1II	CATG	2 cut(s)	272, 440
Hin6I	GCGC	1 cut(s)	525
HinP1I	GCGC	1 cut(s)	525
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HinfI	GANTC	3 cut(s)	52, 59, 369
HpaI	GTTAAC	1 cut(s)	97
HpaII	CCGG	1 cut(s)	528
HphI	GGTGA	4 cut(s)	15, 57, 165, 192
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	5 cut(s)	73, 108, 208, 403, 470
Hpy188III	TCNNGA	6 cut(s)	56, 144, 332, 379, 431, 437
Hpy8I	GTNNAC	1 cut(s)	97
Hpy99I	CGWCG	1 cut(s)	416
HpyAV	CCTTC	3 cut(s)	78, 207, 234
HpyCH4III	ACNGT	3 cut(s)	281, 407, 493
HpyCH4V	TGCA	4 cut(s)	197, 242, 356, 362
HpyF10VI	GCNNNNNNNGC	1 cut(s)	133
Hsp92I	GRCGYC	1 cut(s)	525
Hsp92II	CATG	2 cut(s)	272, 440
HspAI	GCGC	1 cut(s)	525
KasI	GGCGCC	1 cut(s)	524
KroI	GCCGGC	1 cut(s)	527
KroNI	GCCGGC	1 cut(s)	529
KspAI	GTTAAC	1 cut(s)	97
Kzo9I	GATC	5 cut(s)	20, 394, 427, 433, 439
LguI	GCTCTTC	1 cut(s)	29
LmnI	GCTCC	1 cut(s)	85
LweI	GCATC	1 cut(s)	206
MaeI	CTAG	2 cut(s)	182, 288
MalI	GATC	5 cut(s)	22, 396, 429, 435, 441
MboI	GATC	5 cut(s)	20, 394, 427, 433, 439
MboII	GAAGA	8 cut(s)	46, 54, 54, 318, 326, 494, 524, 527
MflI	RGATCY	1 cut(s)	427
MhlI	GDGCHC	1 cut(s)	82
MluCI	AATT	2 cut(s)	11, 464
Mly113I	GGCGCC	1 cut(s)	525
MnlI	CCTC	6 cut(s)	109, 126, 166, 454, 464, 478
MroNI	GCCGGC	1 cut(s)	527
MseI	TTAA	1 cut(s)	96
MspI	CCGG	1 cut(s)	528
MspR9I	CCNGG	4 cut(s)	138, 177, 444, 456
MvaI	CCWGG	4 cut(s)	138, 177, 444, 456
MwoI	GCNNNNNNNGC	1 cut(s)	133
NaeI	GCCGGC	1 cut(s)	529
NarI	GGCGCC	1 cut(s)	525
NdeII	GATC	5 cut(s)	20, 394, 427, 433, 439
NgoMIV	GCCGGC	1 cut(s)	527
NlaIII	CATG	2 cut(s)	272, 440
NlaIV	GGNNCC	4 cut(s)	142, 409, 498, 526
NmeAIII	GCCGAG	1 cut(s)	137
PagI	TCATGA	1 cut(s)	436
PceI	AGGCCT	1 cut(s)	136
PciSI	GCTCTTC	1 cut(s)	29
PcsI	WCGNNNNNNNCGW	1 cut(s)	411
PdiI	GCCGGC	1 cut(s)	529
PfeI	GAWTC	3 cut(s)	52, 59, 369
PflMI	CCANNNNNTGG	1 cut(s)	209
PluTI	GGCGCC	1 cut(s)	528
Psp6I	CCWGG	4 cut(s)	136, 175, 442, 454
PspGI	CCWGG	4 cut(s)	136, 175, 442, 454
PspN4I	GGNNCC	4 cut(s)	142, 409, 498, 526
PsuI	RGATCY	1 cut(s)	427
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SapI	GCTCTTC	1 cut(s)	29
SaqAI	TTAA	1 cut(s)	96
Sau3AI	GATC	5 cut(s)	20, 394, 427, 433, 439
ScrFI	CCNGG	4 cut(s)	138, 177, 444, 456
SduI	GDGCHC	1 cut(s)	82
SetI	ASST	8 cut(s)	70, 129, 158, 178, 187, 218, 247, 480
SfaNI	GCATC	1 cut(s)	206
SfoI	GGCGCC	1 cut(s)	526
Sse9I	AATT	2 cut(s)	11, 464
SseBI	AGGCCT	1 cut(s)	136
SspDI	GGCGCC	1 cut(s)	524
SspMI	CTAG	2 cut(s)	182, 288
StuI	AGGCCT	1 cut(s)	136
StyD4I	CCNGG	4 cut(s)	136, 175, 442, 454
StyI	CCWWGG	2 cut(s)	181, 309
TaaI	ACNGT	3 cut(s)	281, 407, 493
TaqI	TCGA	1 cut(s)	432
TasI	AATT	2 cut(s)	11, 464
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	3 cut(s)	52, 59, 369
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TscAI	CASTG	2 cut(s)	244, 538
TspDTI	ATGAA	1 cut(s)	102
TspRI	CASTG	2 cut(s)	244, 538
Van91I	CCANNNNNTGG	1 cut(s)	209
XagI	CCTNNNNNAGG	2 cut(s)	180, 482
XapI	RAATTY	1 cut(s)	464
XmaJI	CCTAGG	1 cut(s)	181
XspI	CTAG	2 cut(s)	182, 288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.