Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000664.1

Orthogroup ID

OG0005485

Physical Location & Seq

Genomic Coordinates Forward (+)

22455 .. 25082

Gene Structure 2628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000664.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

atggcagatgaacaatcctcaatcgacccctacaagttcctcaaaatcgttcccaatccagatggctcactcacccgcctcgccccactctcaatcgcacccccaaccgagtcaatccccgccgattccgatcccaactcatcccaactcgtcctctccaaggacatccctctcgacccaaaatccaaaacctccctccgcctcttcaaaccccacaatctcgccccaaaccctaacctccctctcctcatctacatccacggcggcggcttcatcatctgcagtgccgcctctcagcctttccaccactgctgctctcgcctcgccctctccatgccagccctagtcctctccgtcgagtaccgtctcgcccccgagcaccgcctccccgccgcctacgacgacgccgtttcggccatcacctggctcaaaaaccaggcctccgctgccgacggagattcgtggctgaaaaactccgttgatttcgccaagtgtttcatcatgggaactagcgcgggatccaatcgcacgcgagtagcagcctccaccacagcctcaagacttactcttcctctgccccctctcaactcaaagagagaaagtctacagaaccttcgtcctaagcaaaaggctcgttgctcttggaaaagactggacaaattttggcgagacctcgttggttttcgggtcggccatgtacttgattccgatgaccagacagaaattgagagctcggattctgacagaggcggggaaatcaatgtgggtttgggcgtgcttagcatggccttgagggaagtagaagactttggagttcaccggaggcattggatcatgctgccggtgcaggcagccatagctggggaagaacacgaagaacacaaaagggtttgggcgaggccgcgtaataggggcttcgggttggcatgccacatcagctacttaacggttctattggaccgaatcccgacagagggacctattggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0016787

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

329

Amino Acids

36.25

Weight (kDa)

8.2

Isoelectric Point (pI)

48.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45600
fragaria_vesca	FvH4_7g12500
malus_domestica	MD02G1198400.v1.1 MD02G1198500.v1.1 MD02G1198600.v1.1
prunus_persica	Prupe.2G149600_v2.0.a1
pyrus_communis	pycom02g16210
rosa_chinensis	RchiOBHm_Chr1g0351371 RchiOBHm_Chr1g0351401
rosa_laevigata	RLG00000028409 RLG00000028410
rosa_multiflora	Rmu_sc0000664.1_g000003 Rmu_sc0000664.1_g000005 Rmu_sc0000664.1_g000006 Rmu_sc0005320.1_g000006 Rmu_sc0005320.1_g000011
rosa_roxburghii	Rroxscaffold_4G00303850
rosa_rugosa	Rorug01G0217700 Rorug01G0217900
rosa_samantha	Rh1AG232300 Rh1AG232400 Rh1BG202700 Rh1BG203200 Rh1CG217100 Rh1DG229800 Rh1DG230200
rosa_wichuraiana	Rw0G011320 Rw1G020230 Rw1G020240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	423
AccI	GTMKAC	1 cut(s)	604
AccII	CGCG	3 cut(s)	515, 532, 904
AclWI	GGATC	4 cut(s)	125, 513, 526, 839
AcoI	YGGCCR	2 cut(s)	414, 691
AcsI	RAATTY	1 cut(s)	659
AcyI	GRCGYC	1 cut(s)	405
AfaI	GTAC	2 cut(s)	362, 699
AfiI	CCNNNNNNNGG	5 cut(s)	160, 423, 861, 973, 974
AgsI	TTSAA	1 cut(s)	208
AjnI	CCWGG	2 cut(s)	422, 435
AluBI	AGCT	3 cut(s)	732, 860, 939
AluI	AGCT	3 cut(s)	732, 860, 939
Alw21I	GWGCWC	2 cut(s)	381, 734
Alw26I	GTCTC	2 cut(s)	371, 663
AlwI	GGATC	4 cut(s)	125, 513, 526, 839
Ama87I	CYCGRG	1 cut(s)	374
AoxI	GGCC	5 cut(s)	414, 438, 691, 786, 899
ApeKI	GCWGC	5 cut(s)	312, 446, 539, 838, 851
ApoI	RAATTY	1 cut(s)	659
AspLEI	GCGC	1 cut(s)	515
AspS9I	GGNCC	2 cut(s)	958, 977
AsuHPI	GGTGA	3 cut(s)	64, 412, 809
AvaI	CYCGRG	1 cut(s)	374
AvaII	GGWCC	2 cut(s)	958, 977
BamHI	GGATCC	1 cut(s)	518
BanII	GRGCYC	1 cut(s)	734
BbsI	GAAGAC	1 cut(s)	810
Bbv12I	GWGCWC	2 cut(s)	381, 734
BbvI	GCAGC	5 cut(s)	299, 433, 551, 825, 863
BccI	CCATC	2 cut(s)	56, 425
BceAI	ACGGC	2 cut(s)	277, 392
BcgI	CGANNNNNNTGC	2 cut(s)	614, 648
BciT130I	CCWGG	2 cut(s)	424, 437
BcoDI	GTCTC	2 cut(s)	371, 663
BfaI	CTAG	2 cut(s)	344, 510
BfmI	CTRYAG	2 cut(s)	280, 605
BglI	GCCNNNNNGGC	1 cut(s)	413
BlpI	GCTNAGC	1 cut(s)	779
Bme1390I	CCNGG	2 cut(s)	424, 437
Bme18I	GGWCC	2 cut(s)	958, 977
BmeT110I	CYCGRG	1 cut(s)	374
BmgT120I	GGNCC	2 cut(s)	958, 977
BmiI	GGNNCC	2 cut(s)	520, 978
BmrFI	CCNGG	2 cut(s)	424, 437
BpiI	GAAGAC	1 cut(s)	810
Bpu10I	CCTNAGC	1 cut(s)	621
Bpu1102I	GCTNAGC	1 cut(s)	779
BpuEI	CTTGAG	2 cut(s)	541, 811
BsaBI	GATNNNNATC	1 cut(s)	129
BsaHI	GRCGYC	1 cut(s)	405
BsaI	GGTCTC	1 cut(s)	663
BsaJI	CCNNGG	2 cut(s)	159, 259
BsaWI	WCCGGW	1 cut(s)	819
BsaXI	ACNNNNNCTCC	2 cut(s)	425, 455
Bsc4I	CCNNNNNNNGG	5 cut(s)	160, 423, 861, 973, 974
Bse118I	RCCGGY	1 cut(s)	841
Bse1I	ACTGG	1 cut(s)	657
Bse8I	GATNNNNATC	1 cut(s)	129
BseBI	CCWGG	2 cut(s)	424, 437
BseDI	CCNNGG	2 cut(s)	159, 259
BseGI	GGATG	3 cut(s)	140, 165, 255
BseJI	GATNNNNATC	1 cut(s)	129
BseLI	CCNNNNNNNGG	5 cut(s)	160, 423, 861, 973, 974
BseMII	CTCAG	1 cut(s)	308
BseNI	ACTGG	1 cut(s)	657
BseRI	GAGGAG	1 cut(s)	236
BseXI	GCAGC	5 cut(s)	299, 433, 551, 825, 863
BseYI	CCCAGC	1 cut(s)	860
BsgI	GTGCAG	1 cut(s)	866
Bsh1236I	CGCG	3 cut(s)	515, 532, 904
BshFI	GGCC	5 cut(s)	416, 440, 693, 788, 901
BsiHKAI	GWGCWC	2 cut(s)	381, 734
BsiHKCI	CYCGRG	1 cut(s)	374
BsiSI	CCGG	2 cut(s)	820, 842
BslI	CCNNNNNNNGG	5 cut(s)	160, 423, 861, 973, 974
BsmAI	GTCTC	2 cut(s)	371, 663
BsmBI	CGTCTC	1 cut(s)	371
BsnI	GGCC	5 cut(s)	416, 440, 693, 788, 901
Bso31I	GGTCTC	1 cut(s)	663
BsoBI	CYCGRG	1 cut(s)	374
Bsp1286I	GDGCHC	2 cut(s)	381, 734
Bsp143I	GATC	3 cut(s)	130, 518, 831
Bsp1720I	GCTNAGC	1 cut(s)	779
BspANI	GGCC	5 cut(s)	416, 440, 693, 788, 901
BspCNI	CTCAG	1 cut(s)	307
BspFNI	CGCG	3 cut(s)	515, 532, 904
BspLI	GGNNCC	2 cut(s)	520, 978
BspMAI	CTGCAG	1 cut(s)	284
BspPI	GGATC	4 cut(s)	125, 513, 526, 839
BspTNI	GGTCTC	1 cut(s)	663
BsrFI	RCCGGY	1 cut(s)	841
BsrI	ACTGG	1 cut(s)	657
BssAI	RCCGGY	1 cut(s)	841
BssECI	CCNNGG	2 cut(s)	159, 259
BssMI	GATC	3 cut(s)	130, 518, 831
BssNI	GRCGYC	1 cut(s)	405
BssT1I	CCWWGG	1 cut(s)	159
Bst2UI	CCWGG	2 cut(s)	424, 437
Bst4CI	ACNGT	2 cut(s)	365, 949
Bst6I	CTCTTC	2 cut(s)	209, 573
BstACI	GRCGYC	1 cut(s)	405
BstC8I	GCNNGC	5 cut(s)	339, 530, 776, 849, 928
BstDEI	CTNAG	3 cut(s)	294, 621, 779
BstDSI	CCRYGG	1 cut(s)	259
BstENI	CCTNNNNNAGG	1 cut(s)	158
BstF5I	GGATG	3 cut(s)	140, 165, 255
BstFNI	CGCG	3 cut(s)	515, 532, 904
BstHHI	GCGC	1 cut(s)	515
BstKTI	GATC	3 cut(s)	133, 521, 834
BstMAI	GTCTC	2 cut(s)	371, 663
BstMBI	GATC	3 cut(s)	130, 518, 831
BstMWI	GCNNNNNNNGC	7 cut(s)	318, 413, 446, 780, 844, 857, 936
BstNI	CCWGG	2 cut(s)	424, 437
BstNSI	RCATGY	1 cut(s)	930
BstSCI	CCNGG	2 cut(s)	422, 435
BstSFI	CTRYAG	2 cut(s)	280, 605
BstUI	CGCG	3 cut(s)	515, 532, 904
BstV1I	GCAGC	5 cut(s)	299, 433, 551, 825, 863
BstV2I	GAAGAC	1 cut(s)	810
BstX2I	RGATCY	1 cut(s)	518
BstYI	RGATCY	1 cut(s)	518
BsuRI	GGCC	5 cut(s)	416, 440, 693, 788, 901
BtgI	CCRYGG	1 cut(s)	259
BtsCI	GGATG	3 cut(s)	140, 165, 255
BtsI	GCAGTG	2 cut(s)	289, 307
BtsIMutI	CAGTG	2 cut(s)	289, 307
Cac8I	GCNNGC	5 cut(s)	339, 530, 776, 849, 928
CfoI	GCGC	1 cut(s)	515
Cfr10I	RCCGGY	1 cut(s)	841
Cfr13I	GGNCC	2 cut(s)	958, 977
CseI	GACGC	1 cut(s)	413
Csp6I	GTAC	2 cut(s)	361, 698
CviAII	CATG	6 cut(s)	334, 502, 695, 784, 835, 927
CviQI	GTAC	2 cut(s)	361, 698
DdeI	CTNAG	3 cut(s)	294, 621, 779
DpnI	GATC	3 cut(s)	132, 520, 833
DpnII	GATC	3 cut(s)	130, 518, 831
EaeI	YGGCCR	2 cut(s)	414, 691
Eam1104I	CTCTTC	2 cut(s)	209, 573
EarI	CTCTTC	2 cut(s)	209, 573
EciI	GGCGGA	1 cut(s)	188
Ecl136II	GAGCTC	1 cut(s)	732
Eco130I	CCWWGG	1 cut(s)	159
Eco147I	AGGCCT	1 cut(s)	440
Eco24I	GRGCYC	1 cut(s)	734
Eco31I	GGTCTC	1 cut(s)	663
Eco47I	GGWCC	2 cut(s)	958, 977
Eco53kI	GAGCTC	1 cut(s)	732
Eco88I	CYCGRG	1 cut(s)	374
EcoICRI	GAGCTC	1 cut(s)	732
EcoNI	CCTNNNNNAGG	1 cut(s)	158
EcoO109I	RGGNCCY	1 cut(s)	977
EcoRII	CCWGG	2 cut(s)	422, 435
EcoT14I	CCWWGG	1 cut(s)	159
EcoT38I	GRGCYC	1 cut(s)	734
ErhI	CCWWGG	1 cut(s)	159
Esp3I	CGTCTC	1 cut(s)	371
FaeI	CATG	6 cut(s)	337, 505, 698, 787, 838, 930
FaiI	YATR	7 cut(s)	335, 503, 696, 785, 836, 857, 928
FatI	CATG	6 cut(s)	333, 501, 694, 783, 834, 926
FauI	CCCGC	5 cut(s)	83, 127, 397, 508, 743
FblI	GTMKAC	1 cut(s)	604
FokI	GGATG	3 cut(s)	127, 152, 242
FriOI	GRGCYC	1 cut(s)	734
FspBI	CTAG	2 cut(s)	344, 510
GlaI	GCGC	1 cut(s)	514
GsaI	CCCAGC	1 cut(s)	864
HaeIII	GGCC	5 cut(s)	416, 440, 693, 788, 901
HapII	CCGG	2 cut(s)	820, 842
HgaI	GACGC	1 cut(s)	413
HhaI	GCGC	1 cut(s)	515
Hin1I	GRCGYC	1 cut(s)	405
Hin1II	CATG	6 cut(s)	337, 505, 698, 787, 838, 930
Hin6I	GCGC	1 cut(s)	513
HinP1I	GCGC	1 cut(s)	513
HinfI	GANTC	6 cut(s)	110, 125, 458, 704, 737, 963
HpaII	CCGG	2 cut(s)	820, 842
HphI	GGTGA	3 cut(s)	64, 412, 809
Hpy166II	GTNNAC	2 cut(s)	605, 817
Hpy188I	TCNGA	4 cut(s)	130, 709, 736, 742
Hpy188III	TCNNGA	4 cut(s)	59, 173, 558, 967
Hpy8I	GTNNAC	2 cut(s)	605, 817
Hpy99I	CGWCG	4 cut(s)	359, 404, 407, 455
HpyAV	CCTTC	1 cut(s)	623
HpyCH4III	ACNGT	2 cut(s)	365, 949
HpyCH4V	TGCA	2 cut(s)	282, 847
HpyF10VI	GCNNNNNNNGC	7 cut(s)	318, 413, 446, 780, 844, 857, 936
HpyF3I	CTNAG	3 cut(s)	294, 621, 779
Hsp92I	GRCGYC	1 cut(s)	405
Hsp92II	CATG	6 cut(s)	337, 505, 698, 787, 838, 930
HspAI	GCGC	1 cut(s)	513
Kzo9I	GATC	3 cut(s)	130, 518, 831
Lsp1109I	GCAGC	5 cut(s)	299, 433, 551, 825, 863
MaeI	CTAG	2 cut(s)	344, 510
MalI	GATC	3 cut(s)	132, 520, 833
MboI	GATC	3 cut(s)	130, 518, 831
MboII	GAAGA	5 cut(s)	196, 560, 815, 878, 887
MflI	RGATCY	1 cut(s)	518
MhlI	GDGCHC	2 cut(s)	381, 734
MluCI	AATT	2 cut(s)	659, 723
MlyI	GAGTC	1 cut(s)	119
MseI	TTAA	1 cut(s)	944
MspA1I	CMGCKG	1 cut(s)	446
MspI	CCGG	2 cut(s)	820, 842
MspR9I	CCNGG	2 cut(s)	424, 437
MvaI	CCWGG	2 cut(s)	424, 437
MvnI	CGCG	3 cut(s)	515, 532, 904
MwoI	GCNNNNNNNGC	7 cut(s)	318, 413, 446, 780, 844, 857, 936
NdeII	GATC	3 cut(s)	130, 518, 831
NlaIII	CATG	6 cut(s)	337, 505, 698, 787, 838, 930
NlaIV	GGNNCC	2 cut(s)	520, 978
NspI	RCATGY	1 cut(s)	930
PaeI	GCATGC	1 cut(s)	930
PceI	AGGCCT	1 cut(s)	440
PcsI	WCGNNNNNNNCGW	1 cut(s)	405
PfeI	GAWTC	5 cut(s)	125, 458, 704, 737, 963
PflMI	CCANNNNNTGG	1 cut(s)	423
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
PpuMI	RGGWCCY	1 cut(s)	977
Psp124BI	GAGCTC	1 cut(s)	734
Psp5II	RGGWCCY	1 cut(s)	977
Psp6I	CCWGG	2 cut(s)	422, 435
PspFI	CCCAGC	1 cut(s)	860
PspGI	CCWGG	2 cut(s)	422, 435
PspN4I	GGNNCC	2 cut(s)	520, 978
PspPI	GGNCC	2 cut(s)	958, 977
PspPPI	RGGWCCY	1 cut(s)	977
PstI	CTGCAG	1 cut(s)	284
PsuI	RGATCY	1 cut(s)	518
RsaI	GTAC	2 cut(s)	362, 699
RsaNI	GTAC	2 cut(s)	361, 698
SacI	GAGCTC	1 cut(s)	734
SaqAI	TTAA	1 cut(s)	944
Sau3AI	GATC	3 cut(s)	130, 518, 831
Sau96I	GGNCC	2 cut(s)	958, 977
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	2 cut(s)	424, 437
SduI	GDGCHC	2 cut(s)	381, 734
SetI	ASST	9 cut(s)	194, 240, 425, 615, 675, 734, 862, 941, 982
SfcI	CTRYAG	2 cut(s)	280, 605
SinI	GGWCC	2 cut(s)	958, 977
SmlI	CTYRAG	2 cut(s)	556, 790
SmoI	CTYRAG	2 cut(s)	556, 790
SphI	GCATGC	1 cut(s)	930
Sse9I	AATT	2 cut(s)	659, 723
SseBI	AGGCCT	1 cut(s)	440
SspMI	CTAG	2 cut(s)	344, 510
SstI	GAGCTC	1 cut(s)	734
StuI	AGGCCT	1 cut(s)	440
StyD4I	CCNGG	2 cut(s)	422, 435
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	2 cut(s)	365, 949
TaqI	TCGA	3 cut(s)	24, 174, 357
TaqII	GACCGA	1 cut(s)	975
TasI	AATT	2 cut(s)	659, 723
TatI	WGTACW	1 cut(s)	697
TauI	GCSGC	5 cut(s)	267, 270, 290, 395, 904
TfiI	GAWTC	5 cut(s)	125, 458, 704, 737, 963
Tru1I	TTAA	1 cut(s)	944
Tru9I	TTAA	1 cut(s)	944
TscAI	CASTG	2 cut(s)	289, 314
TseI	GCWGC	5 cut(s)	312, 446, 539, 838, 851
TspDTI	ATGAA	3 cut(s)	24, 262, 487
TspGWI	ACGGA	3 cut(s)	343, 466, 468
TspRI	CASTG	2 cut(s)	289, 314
Van91I	CCANNNNNTGG	1 cut(s)	423
VpaK11BI	GGWCC	2 cut(s)	958, 977
XagI	CCTNNNNNAGG	1 cut(s)	158
XapI	RAATTY	1 cut(s)	659
XceI	RCATGY	1 cut(s)	930
XmiI	GTMKAC	1 cut(s)	604
XspI	CTAG	2 cut(s)	344, 510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.