Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005485

Physical Location & Seq

Genomic Coordinates Reverse (-)

31138340 .. 31140334

Gene Structure 1995 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0217700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGAAGGCAAAAGGGAAGAAGGTATAAGAAAAGGACCATGGAAAGCAGAGGAGGATGAAGTGCTTCTCAACCATGTGAAGAAATGTGGCCCTAGAGACTGGAGCTCCATTCGATCCAAAGGCCTCTTGCAGCGTACCGGAAAGTCCTGCCGTCTCCGTTGGGTTAATAAGCTTCGACCCAACTTGAAGAATGGGTGCAAATTTTCACTAGAGGAGGAGAGGGTGGTAATAGAGTTGCAAGCGCAATTTGGGAACAAATGGGCAAAAATAGCAACACATTTGCCTGGAAGAACTGACAATGATGTCAAGAACTTTTGGAGTAGCAGGCAGAAGAGACTGGCTAGGATTCTGCAGACATCTACAGCAGCAATCACACCCTCCAAATCACACAAAAACAGAAGGGAAATATCTGTTTACCATGATGAGGTTCCTACCTTGGAGGAGTCAGAGTATAGAGAGAATGCAAAGCACTTTTTTTTCAAAGAGATTCCAAAGTTCAGTTGTTCATCAGAGGGAGAATCATCATCTCAGGCTGCATCATGCTCATCACCTTGCATTGGGAACTCTGATGCAATCCAAATGGTGCCACTCCCAGATCTTCTTGACTCCAAGTTGCTTGGTTTCGAAGCAAACCCCGTCCAGCAGGAGCTCGCTCTACCTGAGAAGAATCTATGGATTGAATCCCAACCTCTAATCCCTTTCCTAGAGAACCCACAACCCCAAACAGACCTCGAATTCTCATCTGACACCCAAGAATTCCTGAAACTTGACTTTGACATGTTCACATCTCTGGATGCTGAACTTAGCAAACAACTCGACGTCGAGCCACCGTTTCTTGAGCCAGTAGGAAGCTGTGGAAATGTTGAAGGGGAAAAGATTGACAACCCAATAACCCCGGACTGCGTCTTCGATGACTTTCCAGCCGAAATGTTTGATCAAATTGAGCCGCTGCCAAATGGCTCAAATCCATCTGATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

326

Amino Acids

36.93

Weight (kDa)

5.01

Isoelectric Point (pI)

56.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	11 - 56	2.6e-12	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	14 - 65	1e-10	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 107	9.8e-13	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45600
fragaria_vesca	FvH4_7g12500
malus_domestica	MD02G1198400.v1.1 MD02G1198500.v1.1 MD02G1198600.v1.1
prunus_persica	Prupe.2G149600_v2.0.a1
pyrus_communis	pycom02g16210
rosa_chinensis	RchiOBHm_Chr1g0351371 RchiOBHm_Chr1g0351401
rosa_laevigata	RLG00000028409 RLG00000028410
rosa_multiflora	Rmu_sc0000664.1_g000003 Rmu_sc0000664.1_g000005 Rmu_sc0000664.1_g000006 Rmu_sc0005320.1_g000006 Rmu_sc0005320.1_g000011
rosa_roxburghii	Rroxscaffold_4G00303850
rosa_rugosa	Rorug01G0217700 Rorug01G0217900
rosa_samantha	Rh1AG232300 Rh1AG232400 Rh1BG202700 Rh1BG203200 Rh1CG217100 Rh1DG229800 Rh1DG230200
rosa_wichuraiana	Rw0G011320 Rw1G020230 Rw1G020240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	302
AatII	GACGTC	1 cut(s)	822
AccB1I	GGYRCC	1 cut(s)	583
AciI	CCGC	1 cut(s)	947
AclWI	GGATC	1 cut(s)	108
AcsI	RAATTY	3 cut(s)	200, 734, 755
AcyI	GRCGYC	1 cut(s)	819
AfaI	GTAC	1 cut(s)	136
AfiI	CCNNNNNNNGG	2 cut(s)	424, 557
AflIII	ACRYGT	1 cut(s)	777
AgsI	TTSAA	4 cut(s)	187, 481, 680, 866
AjnI	CCWGG	1 cut(s)	283
AluBI	AGCT	4 cut(s)	105, 172, 649, 852
AluI	AGCT	4 cut(s)	105, 172, 649, 852
Alw21I	GWGCWC	2 cut(s)	107, 651
Alw26I	GTCTC	3 cut(s)	90, 158, 328
AlwI	GGATC	1 cut(s)	108
AoxI	GGCC	2 cut(s)	88, 121
ApeKI	GCWGC	4 cut(s)	130, 365, 533, 949
ApoI	RAATTY	3 cut(s)	200, 734, 755
ArsI	GACNNNNNNTTYG	2 cut(s)	890, 922
Asp700I	GAANNNNTTC	1 cut(s)	63
AspLEI	GCGC	1 cut(s)	244
AspS9I	GGNCC	2 cut(s)	35, 89
AsuC2I	CCSGG	1 cut(s)	896
AsuHPI	GGTGA	1 cut(s)	540
AsuII	TTCGAA	1 cut(s)	624
AvaII	GGWCC	1 cut(s)	35
BanI	GGYRCC	1 cut(s)	583
BanII	GRGCYC	2 cut(s)	107, 651
BbsI	GAAGAC	1 cut(s)	898
Bbv12I	GWGCWC	2 cut(s)	107, 651
BbvI	GCAGC	4 cut(s)	142, 377, 520, 936
BccI	CCATC	1 cut(s)	976
BceAI	ACGGC	1 cut(s)	135
BcgI	CGANNNNNNTGC	2 cut(s)	796, 830
BciT130I	CCWGG	1 cut(s)	285
BclI	TGATCA	1 cut(s)	934
BcnI	CCSGG	1 cut(s)	896
BcoDI	GTCTC	3 cut(s)	90, 158, 328
BfaI	CTAG	4 cut(s)	93, 209, 342, 704
BfmI	CTRYAG	2 cut(s)	350, 360
BglII	AGATCT	1 cut(s)	595
BisI	GCNGC	5 cut(s)	131, 366, 534, 947, 950
BlsI	GCNGC	5 cut(s)	132, 367, 535, 948, 951
Bme1390I	CCNGG	2 cut(s)	285, 896
Bme18I	GGWCC	1 cut(s)	35
BmgT120I	GGNCC	2 cut(s)	35, 89
BmiI	GGNNCC	2 cut(s)	429, 585
BmrFI	CCNGG	2 cut(s)	285, 896
BmsI	GCATC	3 cut(s)	545, 559, 784
BpiI	GAAGAC	1 cut(s)	898
BpmI	CTGGAG	1 cut(s)	121
Bpu14I	TTCGAA	1 cut(s)	624
BpuEI	CTTGAG	1 cut(s)	857
BpuMI	CCSGG	1 cut(s)	896
BsaHI	GRCGYC	1 cut(s)	819
BsaJI	CCNNGG	3 cut(s)	38, 435, 894
BsaWI	WCCGGW	1 cut(s)	137
BsaXI	ACNNNNNCTCC	4 cut(s)	89, 119, 434, 464
Bsc4I	CCNNNNNNNGG	2 cut(s)	424, 557
Bse1I	ACTGG	3 cut(s)	104, 342, 842
BseBI	CCWGG	1 cut(s)	285
BseDI	CCNNGG	3 cut(s)	38, 435, 894
BseGI	GGATG	2 cut(s)	61, 799
BseLI	CCNNNNNNNGG	2 cut(s)	424, 557
BseMII	CTCAG	2 cut(s)	542, 651
BseNI	ACTGG	3 cut(s)	104, 342, 842
BseRI	GAGGAG	4 cut(s)	65, 227, 230, 455
BseXI	GCAGC	4 cut(s)	142, 377, 520, 936
BshFI	GGCC	2 cut(s)	90, 123
BshNI	GGYRCC	1 cut(s)	583
BsiHKAI	GWGCWC	2 cut(s)	107, 651
BsiSI	CCGG	2 cut(s)	138, 896
BslI	CCNNNNNNNGG	2 cut(s)	424, 557
BsmAI	GTCTC	3 cut(s)	90, 158, 328
BsmBI	CGTCTC	1 cut(s)	158
BsmI	GAATGC	1 cut(s)	466
BsnI	GGCC	2 cut(s)	90, 123
Bsp119I	TTCGAA	1 cut(s)	624
Bsp1286I	GDGCHC	2 cut(s)	107, 651
Bsp143I	GATC	3 cut(s)	113, 595, 934
Bsp19I	CCATGG	1 cut(s)	38
BspACI	CCGC	1 cut(s)	947
BspANI	GGCC	2 cut(s)	90, 123
BspCNI	CTCAG	2 cut(s)	541, 652
BspLI	GGNNCC	2 cut(s)	429, 585
BspMAI	CTGCAG	1 cut(s)	354
BspPI	GGATC	1 cut(s)	108
BspT104I	TTCGAA	1 cut(s)	624
BspT107I	GGYRCC	1 cut(s)	583
BsrI	ACTGG	3 cut(s)	104, 342, 842
BssECI	CCNNGG	3 cut(s)	38, 435, 894
BssMI	GATC	3 cut(s)	113, 595, 934
BssNI	GRCGYC	1 cut(s)	819
BssT1I	CCWWGG	2 cut(s)	38, 435
Bst2UI	CCWGG	1 cut(s)	285
Bst4CI	ACNGT	1 cut(s)	831
Bst6I	CTCTTC	1 cut(s)	326
BstACI	GRCGYC	1 cut(s)	819
BstBI	TTCGAA	1 cut(s)	624
BstC8I	GCNNGC	3 cut(s)	240, 326, 651
BstDEI	CTNAG	3 cut(s)	528, 660, 803
BstDSI	CCRYGG	1 cut(s)	38
BstF5I	GGATG	2 cut(s)	61, 799
BstHHI	GCGC	1 cut(s)	244
BstKTI	GATC	3 cut(s)	116, 598, 937
BstMAI	GTCTC	3 cut(s)	90, 158, 328
BstMBI	GATC	3 cut(s)	113, 595, 934
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstNI	CCWGG	1 cut(s)	285
BstNSI	RCATGY	1 cut(s)	781
BstSCI	CCNGG	2 cut(s)	283, 894
BstSFI	CTRYAG	2 cut(s)	350, 360
BstV1I	GCAGC	4 cut(s)	142, 377, 520, 936
BstV2I	GAAGAC	1 cut(s)	898
BstX2I	RGATCY	1 cut(s)	595
BstYI	RGATCY	1 cut(s)	595
BsuRI	GGCC	2 cut(s)	90, 123
BtgI	CCRYGG	1 cut(s)	38
BtsCI	GGATG	2 cut(s)	61, 799
Cac8I	GCNNGC	3 cut(s)	240, 326, 651
CfoI	GCGC	1 cut(s)	244
Cfr13I	GGNCC	2 cut(s)	35, 89
CseI	GACGC	1 cut(s)	892
Csp6I	GTAC	1 cut(s)	135
CviAII	CATG	5 cut(s)	39, 74, 419, 540, 778
CviQI	GTAC	1 cut(s)	135
DdeI	CTNAG	3 cut(s)	528, 660, 803
DpnI	GATC	3 cut(s)	115, 597, 936
DpnII	GATC	3 cut(s)	113, 595, 934
DrdI	GACNNNNNNGTC	1 cut(s)	302
DseDI	GACNNNNNNGTC	1 cut(s)	302
Eam1104I	CTCTTC	1 cut(s)	326
EarI	CTCTTC	1 cut(s)	326
Ecl136II	GAGCTC	2 cut(s)	105, 649
Eco130I	CCWWGG	2 cut(s)	38, 435
Eco147I	AGGCCT	1 cut(s)	123
Eco24I	GRGCYC	2 cut(s)	107, 651
Eco47I	GGWCC	1 cut(s)	35
Eco53kI	GAGCTC	2 cut(s)	105, 649
EcoICRI	GAGCTC	2 cut(s)	105, 649
EcoRI	GAATTC	2 cut(s)	734, 755
EcoRII	CCWGG	1 cut(s)	283
EcoT14I	CCWWGG	2 cut(s)	38, 435
EcoT38I	GRGCYC	2 cut(s)	107, 651
ErhI	CCWWGG	2 cut(s)	38, 435
Esp3I	CGTCTC	1 cut(s)	158
FaeI	CATG	5 cut(s)	42, 77, 422, 543, 781
FaiI	YATR	8 cut(s)	26, 40, 75, 420, 453, 541, 673, 779
FatI	CATG	5 cut(s)	38, 73, 418, 539, 777
FbaI	TGATCA	1 cut(s)	934
Fnu4HI	GCNGC	5 cut(s)	131, 366, 534, 947, 950
FokI	GGATG	2 cut(s)	68, 806
FriOI	GRGCYC	2 cut(s)	107, 651
Fsp4HI	GCNGC	5 cut(s)	131, 366, 534, 947, 950
FspBI	CTAG	4 cut(s)	93, 209, 342, 704
GlaI	GCGC	1 cut(s)	243
GluI	GCNGC	5 cut(s)	131, 366, 534, 947, 950
GsuI	CTGGAG	1 cut(s)	121
HaeIII	GGCC	2 cut(s)	90, 123
HapII	CCGG	2 cut(s)	138, 896
HgaI	GACGC	1 cut(s)	892
HhaI	GCGC	1 cut(s)	244
Hin1I	GRCGYC	1 cut(s)	819
Hin1II	CATG	5 cut(s)	42, 77, 422, 543, 781
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HindIII	AAGCTT	1 cut(s)	170
HinfI	GANTC	7 cut(s)	346, 443, 487, 518, 605, 667, 680
HpaII	CCGG	2 cut(s)	138, 896
HphI	GGTGA	1 cut(s)	540
Hpy166II	GTNNAC	2 cut(s)	415, 783
Hpy188I	TCNGA	5 cut(s)	448, 511, 568, 745, 973
Hpy188III	TCNNGA	5 cut(s)	307, 602, 760, 791, 836
Hpy8I	GTNNAC	2 cut(s)	415, 783
Hpy99I	CGWCG	2 cut(s)	821, 824
HpyAV	CCTTC	3 cut(s)	14, 393, 860
HpyCH4III	ACNGT	1 cut(s)	831
HpyCH4IV	ACGT	1 cut(s)	819
HpyCH4V	TGCA	8 cut(s)	130, 198, 238, 352, 464, 536, 555, 572
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	3 cut(s)	528, 660, 803
HpySE526I	ACGT	1 cut(s)	819
Hsp92I	GRCGYC	1 cut(s)	819
Hsp92II	CATG	5 cut(s)	42, 77, 422, 543, 781
HspAI	GCGC	1 cut(s)	242
Ksp22I	TGATCA	1 cut(s)	934
Kzo9I	GATC	3 cut(s)	113, 595, 934
LmnI	GCTCC	3 cut(s)	102, 110, 646
Lsp1109I	GCAGC	4 cut(s)	142, 377, 520, 936
LweI	GCATC	3 cut(s)	545, 559, 784
MaeI	CTAG	4 cut(s)	93, 209, 342, 704
MaeII	ACGT	1 cut(s)	819
MalI	GATC	3 cut(s)	115, 597, 936
MboI	GATC	3 cut(s)	113, 595, 934
MboII	GAAGA	8 cut(s)	29, 91, 199, 300, 343, 590, 676, 898
MflI	RGATCY	1 cut(s)	595
MhlI	GDGCHC	2 cut(s)	107, 651
MluCI	AATT	5 cut(s)	200, 245, 734, 755, 939
MlyI	GAGTC	2 cut(s)	452, 599
MroXI	GAANNNNTTC	1 cut(s)	63
MseI	TTAA	1 cut(s)	165
MspA1I	CMGCKG	1 cut(s)	949
MspI	CCGG	2 cut(s)	138, 896
MspR9I	CCNGG	2 cut(s)	285, 896
Mva1269I	GAATGC	1 cut(s)	466
MvaI	CCWGG	1 cut(s)	285
MwoI	GCNNNNNNNGC	1 cut(s)	269
NciI	CCSGG	1 cut(s)	896
NcoI	CCATGG	1 cut(s)	38
NdeII	GATC	3 cut(s)	113, 595, 934
NlaIII	CATG	5 cut(s)	42, 77, 422, 543, 781
NlaIV	GGNNCC	2 cut(s)	429, 585
NspI	RCATGY	1 cut(s)	781
NspV	TTCGAA	1 cut(s)	624
PceI	AGGCCT	1 cut(s)	123
PciI	ACATGT	1 cut(s)	777
PctI	GAATGC	1 cut(s)	466
PdmI	GAANNNNTTC	1 cut(s)	63
PfeI	GAWTC	5 cut(s)	346, 487, 518, 667, 680
PflFI	GACNNNGTC	1 cut(s)	902
PkrI	GCNGC	5 cut(s)	132, 367, 535, 948, 951
PleI	GAGTC	2 cut(s)	451, 599
PpsI	GAGTC	2 cut(s)	451, 599
PscI	ACATGT	1 cut(s)	777
Psp124BI	GAGCTC	2 cut(s)	107, 651
Psp6I	CCWGG	1 cut(s)	283
PspGI	CCWGG	1 cut(s)	283
PspN4I	GGNNCC	2 cut(s)	429, 585
PspPI	GGNCC	2 cut(s)	35, 89
PstI	CTGCAG	1 cut(s)	354
PsuI	RGATCY	1 cut(s)	595
PsyI	GACNNNGTC	1 cut(s)	902
RsaI	GTAC	1 cut(s)	136
RsaNI	GTAC	1 cut(s)	135
SacI	GAGCTC	2 cut(s)	107, 651
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	5 cut(s)	131, 366, 534, 947, 950
Sau3AI	GATC	3 cut(s)	113, 595, 934
Sau96I	GGNCC	2 cut(s)	35, 89
SchI	GAGTC	2 cut(s)	452, 599
ScrFI	CCNGG	2 cut(s)	285, 896
SduI	GDGCHC	2 cut(s)	107, 651
SfaNI	GCATC	3 cut(s)	545, 559, 784
SfcI	CTRYAG	2 cut(s)	350, 360
SfuI	TTCGAA	1 cut(s)	624
SinI	GGWCC	1 cut(s)	35
SmlI	CTYRAG	1 cut(s)	836
SmoI	CTYRAG	1 cut(s)	836
Sse9I	AATT	5 cut(s)	200, 245, 734, 755, 939
SseBI	AGGCCT	1 cut(s)	123
SsiI	CCGC	1 cut(s)	947
SspMI	CTAG	4 cut(s)	93, 209, 342, 704
SstI	GAGCTC	2 cut(s)	107, 651
StuI	AGGCCT	1 cut(s)	123
StyD4I	CCNGG	2 cut(s)	283, 894
StyI	CCWWGG	2 cut(s)	38, 435
TaaI	ACNGT	1 cut(s)	831
TaiI	ACGT	1 cut(s)	822
TaqI	TCGA	7 cut(s)	112, 175, 624, 732, 816, 822, 909
TasI	AATT	5 cut(s)	200, 245, 734, 755, 939
TauI	GCSGC	1 cut(s)	949
TfiI	GAWTC	5 cut(s)	346, 487, 518, 667, 680
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TseI	GCWGC	4 cut(s)	130, 365, 533, 949
TspDTI	ATGAA	2 cut(s)	72, 495
TspGWI	ACGGA	1 cut(s)	146
Tth111I	GACNNNGTC	1 cut(s)	902
VpaK11BI	GGWCC	1 cut(s)	35
XapI	RAATTY	3 cut(s)	200, 734, 755
XceI	RCATGY	1 cut(s)	781
XmnI	GAANNNNTTC	1 cut(s)	63
XspI	CTAG	4 cut(s)	93, 209, 342, 704
ZraI	GACGTC	1 cut(s)	820

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.