Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000664.1

Orthogroup ID

OG0005485

Physical Location & Seq

Genomic Coordinates Forward (+)

28872 .. 29894

Gene Structure 1023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000664.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

atggcagatgaacaatcctcaatcgacccctacaagttcctcaaaatcgttcccaatccagatggctcactcacccgcctcgccccactctcaatcgcacccccaaccgagtcaatccccgccgattccgatcccaactcatcccaactcgtcctctccaaggacatccctctcgacccaaaatccaaaacctccctccgcctcttcaaaccccacaatctcgccccaaaccctaacctccctctcctcatctacatccacggcggcggcttcatcatctgcagcgccgcctctcagcctttccaccactgctgctctcgcctcgctctctctatcccagccctagtcctctccgtcgagtaccgtctcgcccccgagcaccgcctccccgccgcctacgacgacgccgtttcggccatcacctggctcaaaaaccaggcctcctctgccgacggagattcgtggctgaaaaactccgttgatttcgccaagtgtttcatcatgggaactagcgcgggatccaatatcgcctaccacgcgggtctacgcgcttccgatatggacctctccccgatcaaaatccgagggctgatattgcaccaggcgtatttcggcggggtcaacaggaccgaatccgagatcaggttagtcaacgaccgggtgctgccgttagttgctaacgacttgatgtgggccctgagcctgccggagggggcagatcgtgaccacgagtattgtaatccatctatcaacggcggtgatggaaggatccgacggttgccgtggtgtttggttagcgggtacggcggcgacccgctggtggataggcagaaggagatcgcggcactgttggagtcacgcggggtgcacgtgacggtccggtttgaggagggtggttttcatggtgcggagctatttgaccccaacaaggccgaggctttctatgagatcgttaaggaatttatgggctcttgttgtgcatacggcggcgatgctgttgtcgttgcaaaatcgaccatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0016787

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

340

Amino Acids

36.91

Weight (kDa)

5.68

Isoelectric Point (pI)

37.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45600
fragaria_vesca	FvH4_7g12500
malus_domestica	MD02G1198400.v1.1 MD02G1198500.v1.1 MD02G1198600.v1.1
prunus_persica	Prupe.2G149600_v2.0.a1
pyrus_communis	pycom02g16210
rosa_chinensis	RchiOBHm_Chr1g0351371 RchiOBHm_Chr1g0351401
rosa_laevigata	RLG00000028409 RLG00000028410
rosa_multiflora	Rmu_sc0000664.1_g000003 Rmu_sc0000664.1_g000005 Rmu_sc0000664.1_g000006 Rmu_sc0005320.1_g000006 Rmu_sc0005320.1_g000011
rosa_roxburghii	Rroxscaffold_4G00303850
rosa_rugosa	Rorug01G0217700 Rorug01G0217900
rosa_samantha	Rh1AG232300 Rh1AG232400 Rh1BG202700 Rh1BG203200 Rh1CG217100 Rh1DG229800 Rh1DG230200
rosa_wichuraiana	Rw0G011320 Rw1G020230 Rw1G020240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	423
AccI	GTMKAC	1 cut(s)	544
AccII	CGCG	5 cut(s)	515, 539, 549, 842, 861
AclWI	GGATC	5 cut(s)	125, 513, 526, 763, 776
AcoI	YGGCCR	1 cut(s)	414
AcsI	RAATTY	1 cut(s)	959
AcvI	CACGTG	1 cut(s)	871
AcyI	GRCGYC	1 cut(s)	405
AfaI	GTAC	2 cut(s)	362, 803
AfiI	CCNNNNNNNGG	7 cut(s)	160, 423, 642, 709, 820, 886, 928
AgsI	TTSAA	1 cut(s)	208
AjnI	CCWGG	3 cut(s)	422, 435, 600
AluBI	AGCT	1 cut(s)	913
AluI	AGCT	1 cut(s)	913
Alw21I	GWGCWC	2 cut(s)	381, 870
Alw26I	GTCTC	1 cut(s)	371
Alw44I	GTGCAC	1 cut(s)	866
AlwI	GGATC	5 cut(s)	125, 513, 526, 763, 776
Ama87I	CYCGRG	1 cut(s)	374
AoxI	GGCC	4 cut(s)	414, 438, 693, 930
ApaI	GGGCCC	1 cut(s)	697
ApaLI	GTGCAC	1 cut(s)	866
ApeKI	GCWGC	3 cut(s)	282, 312, 664
ApoI	RAATTY	1 cut(s)	959
AspLEI	GCGC	3 cut(s)	287, 515, 551
AspS9I	GGNCC	5 cut(s)	562, 627, 693, 694, 877
AsuC2I	CCSGG	1 cut(s)	659
AsuHPI	GGTGA	3 cut(s)	64, 412, 770
AvaI	CYCGRG	1 cut(s)	374
AvaII	GGWCC	3 cut(s)	562, 627, 877
BaeGI	GKGCMC	2 cut(s)	697, 870
BamHI	GGATCC	2 cut(s)	518, 768
BanII	GRGCYC	2 cut(s)	697, 971
BauI	CACGAG	1 cut(s)	728
BbrPI	CACGTG	1 cut(s)	871
Bbv12I	GWGCWC	2 cut(s)	381, 870
BbvI	GCAGC	3 cut(s)	294, 299, 651
BccI	CCATC	4 cut(s)	56, 425, 751, 755
BceAI	ACGGC	7 cut(s)	277, 392, 652, 766, 769, 820, 1000
BciT130I	CCWGG	3 cut(s)	424, 437, 602
BcnI	CCSGG	1 cut(s)	659
BcoDI	GTCTC	1 cut(s)	371
BfaI	CTAG	2 cut(s)	344, 510
BfmI	CTRYAG	1 cut(s)	280
BfoI	RGCGCY	1 cut(s)	288
BglI	GCCNNNNNGGC	1 cut(s)	413
Bme1390I	CCNGG	4 cut(s)	424, 437, 602, 659
Bme18I	GGWCC	3 cut(s)	562, 627, 877
BmeT110I	CYCGRG	1 cut(s)	374
BmgT120I	GGNCC	5 cut(s)	562, 627, 693, 694, 877
BmiI	GGNNCC	3 cut(s)	520, 695, 770
BmrFI	CCNGG	4 cut(s)	424, 437, 602, 659
BmsI	GCATC	1 cut(s)	982
Bpu10I	CCTNAGC	1 cut(s)	698
BpuMI	CCSGG	1 cut(s)	659
BsaAI	YACGTR	1 cut(s)	871
BsaBI	GATNNNNATC	2 cut(s)	129, 578
BsaHI	GRCGYC	1 cut(s)	405
BsaJI	CCNNGG	5 cut(s)	159, 259, 583, 782, 933
BsaWI	WCCGGW	1 cut(s)	879
BsaXI	ACNNNNNCTCC	2 cut(s)	425, 455
Bsc4I	CCNNNNNNNGG	7 cut(s)	160, 423, 642, 709, 820, 886, 928
Bse8I	GATNNNNATC	2 cut(s)	129, 578
BseBI	CCWGG	3 cut(s)	424, 437, 602
BseDI	CCNNGG	5 cut(s)	159, 259, 583, 782, 933
BseGI	GGATG	3 cut(s)	140, 165, 255
BseJI	GATNNNNATC	2 cut(s)	129, 578
BseLI	CCNNNNNNNGG	7 cut(s)	160, 423, 642, 709, 820, 886, 928
BseMII	CTCAG	2 cut(s)	308, 689
BseRI	GAGGAG	3 cut(s)	236, 433, 902
BseSI	GKGCMC	2 cut(s)	697, 870
BseXI	GCAGC	3 cut(s)	294, 299, 651
BseYI	CCCAGC	1 cut(s)	337
Bsh1236I	CGCG	5 cut(s)	515, 539, 549, 842, 861
Bsh1285I	CGRYCG	1 cut(s)	658
BshFI	GGCC	4 cut(s)	416, 440, 695, 932
BsiEI	CGRYCG	1 cut(s)	658
BsiHKAI	GWGCWC	2 cut(s)	381, 870
BsiHKCI	CYCGRG	1 cut(s)	374
BsiSI	CCGG	3 cut(s)	658, 707, 880
BslI	CCNNNNNNNGG	7 cut(s)	160, 423, 642, 709, 820, 886, 928
BsmAI	GTCTC	1 cut(s)	371
BsmBI	CGTCTC	1 cut(s)	371
BsnI	GGCC	4 cut(s)	416, 440, 695, 932
BsoBI	CYCGRG	1 cut(s)	374
Bsp120I	GGGCCC	1 cut(s)	693
Bsp1286I	GDGCHC	4 cut(s)	381, 697, 870, 971
Bsp143I	GATC	8 cut(s)	130, 518, 573, 639, 718, 768, 837, 948
BspANI	GGCC	4 cut(s)	416, 440, 695, 932
BspCNI	CTCAG	2 cut(s)	307, 690
BspFNI	CGCG	5 cut(s)	515, 539, 549, 842, 861
BspLI	GGNNCC	3 cut(s)	520, 695, 770
BspMAI	CTGCAG	1 cut(s)	284
BspPI	GGATC	5 cut(s)	125, 513, 526, 763, 776
BssECI	CCNNGG	5 cut(s)	159, 259, 583, 782, 933
BssMI	GATC	8 cut(s)	130, 518, 573, 639, 718, 768, 837, 948
BssNI	GRCGYC	1 cut(s)	405
BssSI	CACGAG	1 cut(s)	728
BssT1I	CCWWGG	1 cut(s)	159
Bst2BI	CACGAG	1 cut(s)	728
Bst2UI	CCWGG	3 cut(s)	424, 437, 602
Bst4CI	ACNGT	4 cut(s)	365, 777, 849, 877
Bst6I	CTCTTC	1 cut(s)	209
BstACI	GRCGYC	1 cut(s)	405
BstBAI	YACGTR	1 cut(s)	871
BstC8I	GCNNGC	1 cut(s)	704
BstDEI	CTNAG	2 cut(s)	294, 698
BstDSI	CCRYGG	2 cut(s)	259, 782
BstENI	CCTNNNNNAGG	2 cut(s)	158, 707
BstF5I	GGATG	3 cut(s)	140, 165, 255
BstFNI	CGCG	5 cut(s)	515, 539, 549, 842, 861
BstH2I	RGCGCY	1 cut(s)	288
BstHHI	GCGC	3 cut(s)	287, 515, 551
BstKTI	GATC	8 cut(s)	133, 521, 576, 642, 721, 771, 840, 951
BstMAI	GTCTC	1 cut(s)	371
BstMBI	GATC	8 cut(s)	130, 518, 573, 639, 718, 768, 837, 948
BstMCI	CGRYCG	1 cut(s)	658
BstMWI	GCNNNNNNNGC	6 cut(s)	318, 413, 446, 536, 595, 804
BstNI	CCWGG	3 cut(s)	424, 437, 602
BstSCI	CCNGG	4 cut(s)	422, 435, 600, 657
BstSFI	CTRYAG	1 cut(s)	280
BstSLI	GKGCMC	2 cut(s)	697, 870
BstUI	CGCG	5 cut(s)	515, 539, 549, 842, 861
BstV1I	GCAGC	3 cut(s)	294, 299, 651
BstX2I	RGATCY	2 cut(s)	518, 768
BstYI	RGATCY	2 cut(s)	518, 768
BsuRI	GGCC	4 cut(s)	416, 440, 695, 932
BtgI	CCRYGG	2 cut(s)	259, 782
BtgZI	GCGATG	1 cut(s)	1005
BtsCI	GGATG	3 cut(s)	140, 165, 255
BtsI	GCAGTG	1 cut(s)	307
BtsIMutI	CAGTG	2 cut(s)	307, 845
Cac8I	GCNNGC	1 cut(s)	704
CfoI	GCGC	3 cut(s)	287, 515, 551
Cfr13I	GGNCC	5 cut(s)	562, 627, 693, 694, 877
CpoI	CGGWCCG	1 cut(s)	877
CseI	GACGC	1 cut(s)	413
Csp6I	GTAC	2 cut(s)	361, 802
CspCI	CAANNNNNGTGG	2 cut(s)	716, 751
CspI	CGGWCCG	1 cut(s)	877
CviAII	CATG	3 cut(s)	502, 902, 1018
CviQI	GTAC	2 cut(s)	361, 802
DdeI	CTNAG	2 cut(s)	294, 698
DpnI	GATC	8 cut(s)	132, 520, 575, 641, 720, 770, 839, 950
DpnII	GATC	8 cut(s)	130, 518, 573, 639, 718, 768, 837, 948
EaeI	YGGCCR	1 cut(s)	414
Eam1104I	CTCTTC	1 cut(s)	209
EarI	CTCTTC	1 cut(s)	209
EciI	GGCGGA	1 cut(s)	188
Eco130I	CCWWGG	1 cut(s)	159
Eco147I	AGGCCT	1 cut(s)	440
Eco24I	GRGCYC	2 cut(s)	697, 971
Eco47I	GGWCC	3 cut(s)	562, 627, 877
Eco72I	CACGTG	1 cut(s)	871
Eco88I	CYCGRG	1 cut(s)	374
EcoNI	CCTNNNNNAGG	2 cut(s)	158, 707
EcoO109I	RGGNCCY	1 cut(s)	694
EcoRII	CCWGG	3 cut(s)	422, 435, 600
EcoT14I	CCWWGG	1 cut(s)	159
EcoT38I	GRGCYC	2 cut(s)	697, 971
ErhI	CCWWGG	1 cut(s)	159
Esp3I	CGTCTC	1 cut(s)	371
FaeI	CATG	3 cut(s)	505, 905, 1021
FaiI	YATR	7 cut(s)	503, 560, 903, 945, 965, 982, 1019
FatI	CATG	3 cut(s)	501, 901, 1017
FauI	CCCGC	9 cut(s)	83, 127, 397, 508, 532, 608, 791, 822, 854
FblI	GTMKAC	1 cut(s)	544
FokI	GGATG	3 cut(s)	127, 152, 242
FriOI	GRGCYC	2 cut(s)	697, 971
FspBI	CTAG	2 cut(s)	344, 510
GlaI	GCGC	3 cut(s)	286, 514, 550
GsaI	CCCAGC	1 cut(s)	341
HaeII	RGCGCY	1 cut(s)	288
HaeIII	GGCC	4 cut(s)	416, 440, 695, 932
HapII	CCGG	3 cut(s)	658, 707, 880
HgaI	GACGC	1 cut(s)	413
HhaI	GCGC	3 cut(s)	287, 515, 551
Hin1I	GRCGYC	1 cut(s)	405
Hin1II	CATG	3 cut(s)	505, 905, 1021
Hin6I	GCGC	3 cut(s)	285, 513, 549
HinP1I	GCGC	3 cut(s)	285, 513, 549
HincII	GTYRAC	2 cut(s)	622, 652
HindII	GTYRAC	2 cut(s)	622, 652
HinfI	GANTC	5 cut(s)	110, 125, 458, 632, 854
HpaII	CCGG	3 cut(s)	658, 707, 880
HphI	GGTGA	3 cut(s)	64, 412, 770
Hpy166II	GTNNAC	4 cut(s)	545, 622, 652, 868
Hpy188I	TCNGA	5 cut(s)	130, 556, 584, 637, 773
Hpy188III	TCNNGA	3 cut(s)	59, 173, 722
Hpy8I	GTNNAC	4 cut(s)	545, 622, 652, 868
Hpy99I	CGWCG	5 cut(s)	359, 404, 407, 455, 777
HpyAV	CCTTC	2 cut(s)	759, 826
HpyCH4III	ACNGT	4 cut(s)	365, 777, 849, 877
HpyCH4IV	ACGT	1 cut(s)	870
HpyCH4V	TGCA	5 cut(s)	282, 598, 868, 980, 1007
HpyF10VI	GCNNNNNNNGC	6 cut(s)	318, 413, 446, 536, 595, 804
HpyF3I	CTNAG	2 cut(s)	294, 698
HpySE526I	ACGT	1 cut(s)	870
Hsp92I	GRCGYC	1 cut(s)	405
Hsp92II	CATG	3 cut(s)	505, 905, 1021
HspAI	GCGC	3 cut(s)	285, 513, 549
Kzo9I	GATC	8 cut(s)	130, 518, 573, 639, 718, 768, 837, 948
LmnI	GCTCC	1 cut(s)	910
Lsp1109I	GCAGC	3 cut(s)	294, 299, 651
LweI	GCATC	1 cut(s)	982
MaeI	CTAG	2 cut(s)	344, 510
MaeII	ACGT	1 cut(s)	870
MaeIII	GTNAC	3 cut(s)	722, 855, 871
MalI	GATC	8 cut(s)	132, 520, 575, 641, 720, 770, 839, 950
MboI	GATC	8 cut(s)	130, 518, 573, 639, 718, 768, 837, 948
MboII	GAAGA	1 cut(s)	196
MflI	RGATCY	2 cut(s)	518, 768
MhlI	GDGCHC	4 cut(s)	381, 697, 870, 971
MluCI	AATT	1 cut(s)	959
MlyI	GAGTC	2 cut(s)	119, 863
MmeI	TCCRAC	2 cut(s)	796, 831
MseI	TTAA	1 cut(s)	954
MspA1I	CMGCKG	1 cut(s)	817
MspI	CCGG	3 cut(s)	658, 707, 880
MspR9I	CCNGG	4 cut(s)	424, 437, 602, 659
MvaI	CCWGG	3 cut(s)	424, 437, 602
MvnI	CGCG	5 cut(s)	515, 539, 549, 842, 861
MwoI	GCNNNNNNNGC	6 cut(s)	318, 413, 446, 536, 595, 804
NciI	CCSGG	1 cut(s)	659
NdeII	GATC	8 cut(s)	130, 518, 573, 639, 718, 768, 837, 948
NlaIII	CATG	3 cut(s)	505, 905, 1021
NlaIV	GGNNCC	3 cut(s)	520, 695, 770
NmeAIII	GCCGAG	1 cut(s)	958
NmuCI	GTSAC	3 cut(s)	722, 855, 871
PceI	AGGCCT	1 cut(s)	440
PcsI	WCGNNNNNNNCGW	1 cut(s)	405
PfeI	GAWTC	3 cut(s)	125, 458, 632
PflMI	CCANNNNNTGG	1 cut(s)	423
PleI	GAGTC	2 cut(s)	118, 862
PmaCI	CACGTG	1 cut(s)	871
PmlI	CACGTG	1 cut(s)	871
PpsI	GAGTC	2 cut(s)	118, 862
Ppu21I	YACGTR	1 cut(s)	871
Psp6I	CCWGG	3 cut(s)	422, 435, 600
PspCI	CACGTG	1 cut(s)	871
PspFI	CCCAGC	1 cut(s)	337
PspGI	CCWGG	3 cut(s)	422, 435, 600
PspN4I	GGNNCC	3 cut(s)	520, 695, 770
PspOMI	GGGCCC	1 cut(s)	693
PspPI	GGNCC	5 cut(s)	562, 627, 693, 694, 877
PstI	CTGCAG	1 cut(s)	284
PsuI	RGATCY	2 cut(s)	518, 768
RsaI	GTAC	2 cut(s)	362, 803
RsaNI	GTAC	2 cut(s)	361, 802
Rsr2I	CGGWCCG	1 cut(s)	877
RsrII	CGGWCCG	1 cut(s)	877
SaqAI	TTAA	1 cut(s)	954
Sau3AI	GATC	8 cut(s)	130, 518, 573, 639, 718, 768, 837, 948
Sau96I	GGNCC	5 cut(s)	562, 627, 693, 694, 877
SchI	GAGTC	2 cut(s)	119, 863
ScrFI	CCNGG	4 cut(s)	424, 437, 602, 659
SduI	GDGCHC	4 cut(s)	381, 697, 870, 971
SetI	ASST	7 cut(s)	194, 240, 425, 567, 647, 873, 915
SfaNI	GCATC	1 cut(s)	982
SfcI	CTRYAG	1 cut(s)	280
SinI	GGWCC	3 cut(s)	562, 627, 877
Sse9I	AATT	1 cut(s)	959
SseBI	AGGCCT	1 cut(s)	440
SspMI	CTAG	2 cut(s)	344, 510
StuI	AGGCCT	1 cut(s)	440
StyD4I	CCNGG	4 cut(s)	422, 435, 600, 657
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	4 cut(s)	365, 777, 849, 877
TaiI	ACGT	1 cut(s)	873
TaqI	TCGA	4 cut(s)	24, 174, 357, 1013
TaqII	GACCGA	1 cut(s)	644
TasI	AATT	1 cut(s)	959
TauI	GCSGC	7 cut(s)	267, 270, 290, 395, 810, 845, 990
TfiI	GAWTC	3 cut(s)	125, 458, 632
Tru1I	TTAA	1 cut(s)	954
Tru9I	TTAA	1 cut(s)	954
TscAI	CASTG	2 cut(s)	314, 852
TseFI	GTSAC	3 cut(s)	722, 855, 871
TseI	GCWGC	3 cut(s)	282, 312, 664
Tsp45I	GTSAC	3 cut(s)	722, 855, 871
TspDTI	ATGAA	4 cut(s)	24, 262, 487, 890
TspGWI	ACGGA	3 cut(s)	343, 466, 468
TspRI	CASTG	2 cut(s)	314, 852
Van91I	CCANNNNNTGG	1 cut(s)	423
VneI	GTGCAC	1 cut(s)	866
VpaK11BI	GGWCC	3 cut(s)	562, 627, 877
XagI	CCTNNNNNAGG	2 cut(s)	158, 707
XapI	RAATTY	1 cut(s)	959
XmiI	GTMKAC	1 cut(s)	544
XspI	CTAG	2 cut(s)	344, 510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.