Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00496

Orthogroup ID

OG0005485

Physical Location & Seq

Genomic Coordinates Forward (+)

9704 .. 10726

Gene Structure 1023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G011320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGCAGATGAACAACCCTCAATCGACCCCTACAAGTTCCTCAAAATCGTTCCCAATCCAGATGGCTCACTCACCCGCCTCGCCCCACTCTCAATCGCACCCCCAACCGAGTCAATCCCCGCCGATTCCGATCCCAACTCAGCCCAACTCGTCCTCTCCAAGGACATCCCTCTCGACCCAAAATCCAAAACCTCCCTCCGCCTCTTCAAACCCCACAATCTCGCCCGAAACCCTAACCTCCCTCTCCTCATCTACATCCACGGCGGCGGCTTCATCATCTGCAGCGCCGCCTCTCAGCCTTTCCACCACTGCTGCTCTCGCCTCGCCCTCTCCATCCCAGCCCTAGTCCTCTCGGTCGAGTACCGTCTCGCCCCCGAGCACCGCCTCCCCGCCGCCTACGACGACGCCGCTTCGGCCGTCACCTGGCTCAAAAACCAGGCCTCCTCTGCCGACGGAGATTCGTGGCTGAAAAACTCCGTTGATTTCTCCAAGTGTTTCATCATGGGAACTAGCGCGGGATCCAATATCGCCTACCACGCGGGTCTACGCGCTTCCGATATGGACCTCTCCCCGATCAAAATCCGAGGGCTGATATTGCACCAGGCGTATTTCGGCGGGGTCAACAGGACCGAATCCGAGATCAGGTTAGTCAACGACCGGGTGCTGCCGTTAGTTGCTAACGACTTGATGTGGGCCCTGAGCCTGCCGGAGGGGGCTGATCGTGACCACGAGTATTGTAATCCATCTATCAACGGCGGTGATGGAAGGATCGGACGGTTGCCGTGGTGTTTGGTTAGCGGGTACGGCGGCGACCCGCTTGTGGATAGGCAGAAGGAGATCGCGGCACTGTTGGAGTCACGCGGGGTGCACGTGACGGCCCGGTTTGAGGAGGGTGGTTTTCATGGTGCGGAGCTATTTGACCCCAACAAGGCCGAGGCTTTCTATGAGATTGTTAAGGAATTTATCGGCTCTTGTTGTGCATGCGGCGGCGATGCTGTTGTCGTTGCAAAATCGACCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0016787

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

340

Amino Acids

36.72

Weight (kDa)

5.68

Isoelectric Point (pI)

35.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BD-FAE	PF20434	76 - 187	9.4e-14	BD-FAE
Abhydrolase_3	PF07859	83 - 303	1.7e-53	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45600
fragaria_vesca	FvH4_7g12500
malus_domestica	MD02G1198400.v1.1 MD02G1198500.v1.1 MD02G1198600.v1.1
prunus_persica	Prupe.2G149600_v2.0.a1
pyrus_communis	pycom02g16210
rosa_chinensis	RchiOBHm_Chr1g0351371 RchiOBHm_Chr1g0351401
rosa_laevigata	RLG00000028409 RLG00000028410
rosa_multiflora	Rmu_sc0000664.1_g000003 Rmu_sc0000664.1_g000005 Rmu_sc0000664.1_g000006 Rmu_sc0005320.1_g000006 Rmu_sc0005320.1_g000011
rosa_roxburghii	Rroxscaffold_4G00303850
rosa_rugosa	Rorug01G0217700 Rorug01G0217900
rosa_samantha	Rh1AG232300 Rh1AG232400 Rh1BG202700 Rh1BG203200 Rh1CG217100 Rh1DG229800 Rh1DG230200
rosa_wichuraiana	Rw0G011320 Rw1G020230 Rw1G020240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	544
AccII	CGCG	5 cut(s)	515, 539, 549, 842, 861
AclWI	GGATC	4 cut(s)	125, 513, 526, 776
AcoI	YGGCCR	1 cut(s)	414
AcsI	RAATTY	1 cut(s)	959
AcvI	CACGTG	1 cut(s)	871
AcyI	GRCGYC	1 cut(s)	405
AfaI	GTAC	2 cut(s)	362, 803
AfiI	CCNNNNNNNGG	7 cut(s)	160, 423, 642, 709, 820, 886, 928
AgsI	TTSAA	1 cut(s)	208
AjnI	CCWGG	3 cut(s)	422, 435, 600
AluBI	AGCT	1 cut(s)	913
AluI	AGCT	1 cut(s)	913
Alw21I	GWGCWC	2 cut(s)	381, 870
Alw26I	GTCTC	1 cut(s)	371
Alw44I	GTGCAC	1 cut(s)	866
AlwI	GGATC	4 cut(s)	125, 513, 526, 776
Ama87I	CYCGRG	1 cut(s)	374
AoxI	GGCC	5 cut(s)	414, 438, 693, 876, 930
ApaI	GGGCCC	1 cut(s)	697
ApaLI	GTGCAC	1 cut(s)	866
ApeKI	GCWGC	3 cut(s)	282, 312, 664
ApoI	RAATTY	1 cut(s)	959
AspLEI	GCGC	3 cut(s)	287, 515, 551
AspS9I	GGNCC	5 cut(s)	562, 627, 693, 694, 877
AsuC2I	CCSGG	2 cut(s)	659, 880
AsuHPI	GGTGA	3 cut(s)	64, 412, 770
AvaI	CYCGRG	1 cut(s)	374
AvaII	GGWCC	2 cut(s)	562, 627
BaeGI	GKGCMC	2 cut(s)	697, 870
BamHI	GGATCC	1 cut(s)	518
BanII	GRGCYC	1 cut(s)	697
BauI	CACGAG	1 cut(s)	728
BbrPI	CACGTG	1 cut(s)	871
Bbv12I	GWGCWC	2 cut(s)	381, 870
BbvI	GCAGC	3 cut(s)	294, 299, 651
BccI	CCATC	4 cut(s)	56, 341, 751, 755
BceAI	ACGGC	7 cut(s)	277, 401, 652, 766, 769, 820, 891
BciT130I	CCWGG	3 cut(s)	424, 437, 602
BcnI	CCSGG	2 cut(s)	659, 880
BcoDI	GTCTC	1 cut(s)	371
BfaI	CTAG	2 cut(s)	344, 510
BfmI	CTRYAG	1 cut(s)	280
BfoI	RGCGCY	1 cut(s)	288
BglI	GCCNNNNNGGC	1 cut(s)	413
Bme1390I	CCNGG	5 cut(s)	424, 437, 602, 659, 880
Bme18I	GGWCC	2 cut(s)	562, 627
BmeT110I	CYCGRG	1 cut(s)	374
BmgT120I	GGNCC	5 cut(s)	562, 627, 693, 694, 877
BmiI	GGNNCC	2 cut(s)	520, 695
BmrFI	CCNGG	5 cut(s)	424, 437, 602, 659, 880
BmsI	GCATC	1 cut(s)	982
Bpu10I	CCTNAGC	1 cut(s)	698
BpuMI	CCSGG	2 cut(s)	659, 880
BsaAI	YACGTR	1 cut(s)	871
BsaBI	GATNNNNATC	2 cut(s)	129, 578
BsaHI	GRCGYC	1 cut(s)	405
BsaJI	CCNNGG	5 cut(s)	159, 259, 583, 782, 933
BsaXI	ACNNNNNCTCC	2 cut(s)	425, 455
Bsc4I	CCNNNNNNNGG	7 cut(s)	160, 423, 642, 709, 820, 886, 928
Bse8I	GATNNNNATC	2 cut(s)	129, 578
BseBI	CCWGG	3 cut(s)	424, 437, 602
BseDI	CCNNGG	5 cut(s)	159, 259, 583, 782, 933
BseGI	GGATG	3 cut(s)	165, 255, 333
BseJI	GATNNNNATC	2 cut(s)	129, 578
BseLI	CCNNNNNNNGG	7 cut(s)	160, 423, 642, 709, 820, 886, 928
BseMII	CTCAG	3 cut(s)	153, 308, 689
BseRI	GAGGAG	3 cut(s)	236, 433, 902
BseSI	GKGCMC	2 cut(s)	697, 870
BseX3I	CGGCCG	1 cut(s)	414
BseXI	GCAGC	3 cut(s)	294, 299, 651
BseYI	CCCAGC	1 cut(s)	337
Bsh1236I	CGCG	5 cut(s)	515, 539, 549, 842, 861
Bsh1285I	CGRYCG	3 cut(s)	357, 417, 658
BshFI	GGCC	5 cut(s)	416, 440, 695, 878, 932
BsiEI	CGRYCG	3 cut(s)	357, 417, 658
BsiHKAI	GWGCWC	2 cut(s)	381, 870
BsiHKCI	CYCGRG	1 cut(s)	374
BsiSI	CCGG	3 cut(s)	658, 707, 880
BslI	CCNNNNNNNGG	7 cut(s)	160, 423, 642, 709, 820, 886, 928
BsmAI	GTCTC	1 cut(s)	371
BsmBI	CGTCTC	1 cut(s)	371
BsnI	GGCC	5 cut(s)	416, 440, 695, 878, 932
BsoBI	CYCGRG	1 cut(s)	374
Bsp120I	GGGCCC	1 cut(s)	693
Bsp1286I	GDGCHC	3 cut(s)	381, 697, 870
Bsp143I	GATC	7 cut(s)	130, 518, 573, 639, 718, 768, 837
BspANI	GGCC	5 cut(s)	416, 440, 695, 878, 932
BspCNI	CTCAG	3 cut(s)	152, 307, 690
BspFNI	CGCG	5 cut(s)	515, 539, 549, 842, 861
BspLI	GGNNCC	2 cut(s)	520, 695
BspMAI	CTGCAG	1 cut(s)	284
BspPI	GGATC	4 cut(s)	125, 513, 526, 776
BssECI	CCNNGG	5 cut(s)	159, 259, 583, 782, 933
BssMI	GATC	7 cut(s)	130, 518, 573, 639, 718, 768, 837
BssNI	GRCGYC	1 cut(s)	405
BssSI	CACGAG	1 cut(s)	728
BssT1I	CCWWGG	1 cut(s)	159
Bst2BI	CACGAG	1 cut(s)	728
Bst2UI	CCWGG	3 cut(s)	424, 437, 602
Bst4CI	ACNGT	3 cut(s)	365, 777, 849
Bst6I	CTCTTC	1 cut(s)	209
BstACI	GRCGYC	1 cut(s)	405
BstBAI	YACGTR	1 cut(s)	871
BstC8I	GCNNGC	2 cut(s)	704, 982
BstDEI	CTNAG	3 cut(s)	139, 294, 698
BstDSI	CCRYGG	2 cut(s)	259, 782
BstENI	CCTNNNNNAGG	2 cut(s)	158, 707
BstF5I	GGATG	3 cut(s)	165, 255, 333
BstFNI	CGCG	5 cut(s)	515, 539, 549, 842, 861
BstH2I	RGCGCY	1 cut(s)	288
BstHHI	GCGC	3 cut(s)	287, 515, 551
BstKTI	GATC	7 cut(s)	133, 521, 576, 642, 721, 771, 840
BstMAI	GTCTC	1 cut(s)	371
BstMBI	GATC	7 cut(s)	130, 518, 573, 639, 718, 768, 837
BstMCI	CGRYCG	3 cut(s)	357, 417, 658
BstMWI	GCNNNNNNNGC	6 cut(s)	318, 413, 446, 536, 595, 804
BstNI	CCWGG	3 cut(s)	424, 437, 602
BstNSI	RCATGY	1 cut(s)	984
BstSCI	CCNGG	5 cut(s)	422, 435, 600, 657, 878
BstSFI	CTRYAG	1 cut(s)	280
BstSLI	GKGCMC	2 cut(s)	697, 870
BstUI	CGCG	5 cut(s)	515, 539, 549, 842, 861
BstV1I	GCAGC	3 cut(s)	294, 299, 651
BstX2I	RGATCY	1 cut(s)	518
BstYI	RGATCY	1 cut(s)	518
BstZI	CGGCCG	1 cut(s)	414
BsuRI	GGCC	5 cut(s)	416, 440, 695, 878, 932
BtgI	CCRYGG	2 cut(s)	259, 782
BtgZI	GCGATG	1 cut(s)	1005
BtsCI	GGATG	3 cut(s)	165, 255, 333
BtsI	GCAGTG	1 cut(s)	307
BtsIMutI	CAGTG	2 cut(s)	307, 845
Cac8I	GCNNGC	2 cut(s)	704, 982
CfoI	GCGC	3 cut(s)	287, 515, 551
Cfr13I	GGNCC	5 cut(s)	562, 627, 693, 694, 877
CseI	GACGC	1 cut(s)	413
Csp6I	GTAC	2 cut(s)	361, 802
CspCI	CAANNNNNGTGG	2 cut(s)	716, 751
CviAII	CATG	3 cut(s)	502, 902, 981
CviQI	GTAC	2 cut(s)	361, 802
DdeI	CTNAG	3 cut(s)	139, 294, 698
DpnI	GATC	7 cut(s)	132, 520, 575, 641, 720, 770, 839
DpnII	GATC	7 cut(s)	130, 518, 573, 639, 718, 768, 837
EaeI	YGGCCR	1 cut(s)	414
EagI	CGGCCG	1 cut(s)	414
Eam1104I	CTCTTC	1 cut(s)	209
EarI	CTCTTC	1 cut(s)	209
EciI	GGCGGA	1 cut(s)	188
EclXI	CGGCCG	1 cut(s)	414
Eco130I	CCWWGG	1 cut(s)	159
Eco147I	AGGCCT	1 cut(s)	440
Eco24I	GRGCYC	1 cut(s)	697
Eco47I	GGWCC	2 cut(s)	562, 627
Eco52I	CGGCCG	1 cut(s)	414
Eco72I	CACGTG	1 cut(s)	871
Eco88I	CYCGRG	1 cut(s)	374
EcoNI	CCTNNNNNAGG	2 cut(s)	158, 707
EcoO109I	RGGNCCY	1 cut(s)	694
EcoRII	CCWGG	3 cut(s)	422, 435, 600
EcoT14I	CCWWGG	1 cut(s)	159
EcoT38I	GRGCYC	1 cut(s)	697
ErhI	CCWWGG	1 cut(s)	159
Esp3I	CGTCTC	1 cut(s)	371
FaeI	CATG	3 cut(s)	505, 905, 984
FaiI	YATR	7 cut(s)	503, 560, 903, 945, 982, 1019, 1021
FatI	CATG	3 cut(s)	501, 901, 980
FauI	CCCGC	9 cut(s)	83, 127, 397, 508, 532, 608, 791, 822, 854
FauNDI	CATATG	1 cut(s)	1019
FblI	GTMKAC	1 cut(s)	544
FokI	GGATG	3 cut(s)	152, 242, 320
FriOI	GRGCYC	1 cut(s)	697
FspBI	CTAG	2 cut(s)	344, 510
GlaI	GCGC	3 cut(s)	286, 514, 550
GsaI	CCCAGC	1 cut(s)	341
HaeII	RGCGCY	1 cut(s)	288
HaeIII	GGCC	5 cut(s)	416, 440, 695, 878, 932
HapII	CCGG	3 cut(s)	658, 707, 880
HgaI	GACGC	1 cut(s)	413
HhaI	GCGC	3 cut(s)	287, 515, 551
Hin1I	GRCGYC	1 cut(s)	405
Hin1II	CATG	3 cut(s)	505, 905, 984
Hin6I	GCGC	3 cut(s)	285, 513, 549
HinP1I	GCGC	3 cut(s)	285, 513, 549
HincII	GTYRAC	2 cut(s)	622, 652
HindII	GTYRAC	2 cut(s)	622, 652
HinfI	GANTC	5 cut(s)	110, 125, 458, 632, 854
HpaII	CCGG	3 cut(s)	658, 707, 880
HphI	GGTGA	3 cut(s)	64, 412, 770
Hpy166II	GTNNAC	4 cut(s)	545, 622, 652, 868
Hpy188I	TCNGA	5 cut(s)	130, 556, 584, 637, 773
Hpy188III	TCNNGA	3 cut(s)	59, 173, 722
Hpy8I	GTNNAC	4 cut(s)	545, 622, 652, 868
Hpy99I	CGWCG	3 cut(s)	404, 407, 455
HpyAV	CCTTC	2 cut(s)	759, 826
HpyCH4III	ACNGT	3 cut(s)	365, 777, 849
HpyCH4IV	ACGT	1 cut(s)	870
HpyCH4V	TGCA	5 cut(s)	282, 598, 868, 980, 1007
HpyF10VI	GCNNNNNNNGC	6 cut(s)	318, 413, 446, 536, 595, 804
HpyF3I	CTNAG	3 cut(s)	139, 294, 698
HpySE526I	ACGT	1 cut(s)	870
Hsp92I	GRCGYC	1 cut(s)	405
Hsp92II	CATG	3 cut(s)	505, 905, 984
HspAI	GCGC	3 cut(s)	285, 513, 549
Kzo9I	GATC	7 cut(s)	130, 518, 573, 639, 718, 768, 837
LmnI	GCTCC	1 cut(s)	910
Lsp1109I	GCAGC	3 cut(s)	294, 299, 651
LweI	GCATC	1 cut(s)	982
MaeI	CTAG	2 cut(s)	344, 510
MaeII	ACGT	1 cut(s)	870
MaeIII	GTNAC	4 cut(s)	418, 722, 855, 871
MalI	GATC	7 cut(s)	132, 520, 575, 641, 720, 770, 839
MboI	GATC	7 cut(s)	130, 518, 573, 639, 718, 768, 837
MboII	GAAGA	1 cut(s)	196
MflI	RGATCY	1 cut(s)	518
MhlI	GDGCHC	3 cut(s)	381, 697, 870
MluCI	AATT	1 cut(s)	959
MlyI	GAGTC	2 cut(s)	119, 863
MmeI	TCCRAC	1 cut(s)	831
MseI	TTAA	1 cut(s)	954
MspI	CCGG	3 cut(s)	658, 707, 880
MspR9I	CCNGG	5 cut(s)	424, 437, 602, 659, 880
MvaI	CCWGG	3 cut(s)	424, 437, 602
MvnI	CGCG	5 cut(s)	515, 539, 549, 842, 861
MwoI	GCNNNNNNNGC	6 cut(s)	318, 413, 446, 536, 595, 804
NciI	CCSGG	2 cut(s)	659, 880
NdeI	CATATG	1 cut(s)	1019
NdeII	GATC	7 cut(s)	130, 518, 573, 639, 718, 768, 837
NlaIII	CATG	3 cut(s)	505, 905, 984
NlaIV	GGNNCC	2 cut(s)	520, 695
NmeAIII	GCCGAG	1 cut(s)	958
NmuCI	GTSAC	4 cut(s)	418, 722, 855, 871
NspI	RCATGY	1 cut(s)	984
PaeI	GCATGC	1 cut(s)	984
PceI	AGGCCT	1 cut(s)	440
PfeI	GAWTC	3 cut(s)	125, 458, 632
PleI	GAGTC	2 cut(s)	118, 862
PmaCI	CACGTG	1 cut(s)	871
PmlI	CACGTG	1 cut(s)	871
PpsI	GAGTC	2 cut(s)	118, 862
Ppu21I	YACGTR	1 cut(s)	871
Psp6I	CCWGG	3 cut(s)	422, 435, 600
PspCI	CACGTG	1 cut(s)	871
PspFI	CCCAGC	1 cut(s)	337
PspGI	CCWGG	3 cut(s)	422, 435, 600
PspN4I	GGNNCC	2 cut(s)	520, 695
PspOMI	GGGCCC	1 cut(s)	693
PspPI	GGNCC	5 cut(s)	562, 627, 693, 694, 877
PstI	CTGCAG	1 cut(s)	284
PsuI	RGATCY	1 cut(s)	518
RsaI	GTAC	2 cut(s)	362, 803
RsaNI	GTAC	2 cut(s)	361, 802
SaqAI	TTAA	1 cut(s)	954
Sau3AI	GATC	7 cut(s)	130, 518, 573, 639, 718, 768, 837
Sau96I	GGNCC	5 cut(s)	562, 627, 693, 694, 877
SchI	GAGTC	2 cut(s)	119, 863
ScrFI	CCNGG	5 cut(s)	424, 437, 602, 659, 880
SduI	GDGCHC	3 cut(s)	381, 697, 870
SetI	ASST	7 cut(s)	194, 240, 425, 567, 647, 873, 915
SfaNI	GCATC	1 cut(s)	982
SfcI	CTRYAG	1 cut(s)	280
SinI	GGWCC	2 cut(s)	562, 627
SphI	GCATGC	1 cut(s)	984
Sse9I	AATT	1 cut(s)	959
SseBI	AGGCCT	1 cut(s)	440
SspMI	CTAG	2 cut(s)	344, 510
StuI	AGGCCT	1 cut(s)	440
StyD4I	CCNGG	5 cut(s)	422, 435, 600, 657, 878
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	3 cut(s)	365, 777, 849
TaiI	ACGT	1 cut(s)	873
TaqI	TCGA	4 cut(s)	24, 174, 357, 1013
TaqII	GACCGA	2 cut(s)	343, 644
TasI	AATT	1 cut(s)	959
TauI	GCSGC	9 cut(s)	267, 270, 290, 395, 410, 810, 845, 987, 990
TfiI	GAWTC	3 cut(s)	125, 458, 632
Tru1I	TTAA	1 cut(s)	954
Tru9I	TTAA	1 cut(s)	954
TscAI	CASTG	2 cut(s)	314, 852
TseFI	GTSAC	4 cut(s)	418, 722, 855, 871
TseI	GCWGC	3 cut(s)	282, 312, 664
Tsp45I	GTSAC	4 cut(s)	418, 722, 855, 871
TspDTI	ATGAA	4 cut(s)	24, 262, 487, 890
TspGWI	ACGGA	2 cut(s)	466, 468
TspRI	CASTG	2 cut(s)	314, 852
VneI	GTGCAC	1 cut(s)	866
VpaK11BI	GGWCC	2 cut(s)	562, 627
XagI	CCTNNNNNAGG	2 cut(s)	158, 707
XapI	RAATTY	1 cut(s)	959
XceI	RCATGY	1 cut(s)	984
XmiI	GTMKAC	1 cut(s)	544
XspI	CTAG	2 cut(s)	344, 510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.