Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000664.1

Orthogroup ID

OG0005485

Physical Location & Seq

Genomic Coordinates Forward (+)

34591 .. 35658

Gene Structure 1068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000664.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

atggcagatcaacaatcctcaatcgacccctacaagttcctcaaaatcgttcccaacccagatggctcactcacccggctcccccaattcccaatcgcacccacaaccgagtcaatccccgccgattctgatcccaactcatcccaactcgtcctctccaaggacatccctctcgacccaaaatcccaaaccttcctccgcctcttcaaaccccacaatctccccccaaacccaaaccctaacctccctctcctcatctacttccacggcggcggcttcgttctcttcagcgctgcctctcagcctttccacaactcctgctctcgcctcgccctctctatcccagccctagtcctctccgtcgagtaccgtctcgcccccgagcaccgcctccccgccgcctacgacgacgccgtttcggccatcacctggctcaaaaaccaggcctcctctatcgacggagattcgtggctgaaaaactccgtagatttctccaagtgtatcctgatgggaactagcgccggggctaatatcgtttaccacgcggctctacgcgcttccgatgtggacctctccccgatcaagatccttgggctgatattggaccaggcgtatttcggtggggtcaacaggacggaatccgagatcaggttcgtcaacgaccaggtgctgccgttagtcgctaacgacttgatgtgggccctgagtctgcccgagggggttgatcgtgaccacgagtattgtaatccgtttatgaacggcggtgatggaaggatcggacggttgccgtggtgtttggttagcgggtacggcggcgacccgctggtggataggcagaaggagatcgcggcactgttggagtcacgcggggtgcacgtgatggcccggtttaaggagggtggttttcatgctgtggagctatttgaaccgagtgaggccgaggctttgtatgagattgttaaggaatttatcggctcttgttgcgcaccatgttgccgtggcaaaatcagccatgtgacaaataaatctgcgacgggtggaatcgggtcggtccattcggttttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0016787

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

355

Amino Acids

38.63

Weight (kDa)

5.56

Isoelectric Point (pI)

37.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45600
fragaria_vesca	FvH4_7g12500
malus_domestica	MD02G1198400.v1.1 MD02G1198500.v1.1 MD02G1198600.v1.1
prunus_persica	Prupe.2G149600_v2.0.a1
pyrus_communis	pycom02g16210
rosa_chinensis	RchiOBHm_Chr1g0351371 RchiOBHm_Chr1g0351401
rosa_laevigata	RLG00000028409 RLG00000028410
rosa_multiflora	Rmu_sc0000664.1_g000003 Rmu_sc0000664.1_g000005 Rmu_sc0000664.1_g000006 Rmu_sc0005320.1_g000006 Rmu_sc0005320.1_g000011
rosa_roxburghii	Rroxscaffold_4G00303850
rosa_rugosa	Rorug01G0217700 Rorug01G0217900
rosa_samantha	Rh1AG232300 Rh1AG232400 Rh1BG202700 Rh1BG203200 Rh1CG217100 Rh1DG229800 Rh1DG230200
rosa_wichuraiana	Rw0G011320 Rw1G020230 Rw1G020240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	985
AccB7I	CCANNNNNTGG	1 cut(s)	429
AccII	CGCG	4 cut(s)	545, 555, 848, 867
AclWI	GGATC	3 cut(s)	125, 580, 782
AcoI	YGGCCR	1 cut(s)	420
AcsI	RAATTY	1 cut(s)	965
AcuI	CTGAAG	1 cut(s)	271
AcvI	CACGTG	1 cut(s)	877
AcyI	GRCGYC	1 cut(s)	411
AfaI	GTAC	2 cut(s)	368, 809
AfeI	AGCGCT	1 cut(s)	292
AfiI	CCNNNNNNNGG	5 cut(s)	160, 429, 648, 826, 892
AgsI	TTSAA	2 cut(s)	208, 926
AjnI	CCWGG	4 cut(s)	428, 441, 606, 663
AluBI	AGCT	1 cut(s)	919
AluI	AGCT	1 cut(s)	919
Alw21I	GWGCWC	2 cut(s)	387, 876
Alw26I	GTCTC	1 cut(s)	377
Alw44I	GTGCAC	1 cut(s)	872
AlwI	GGATC	3 cut(s)	125, 580, 782
AlwNI	CAGNNNCTG	1 cut(s)	670
Ama87I	CYCGRG	2 cut(s)	380, 713
Aor51HI	AGCGCT	1 cut(s)	292
AoxI	GGCC	5 cut(s)	420, 444, 699, 882, 936
ApaI	GGGCCC	1 cut(s)	703
ApaLI	GTGCAC	1 cut(s)	872
ApeKI	GCWGC	2 cut(s)	293, 670
ApoI	RAATTY	1 cut(s)	965
AspLEI	GCGC	4 cut(s)	293, 521, 557, 986
AspS9I	GGNCC	6 cut(s)	568, 604, 699, 700, 883, 1051
AsuC2I	CCSGG	3 cut(s)	76, 523, 886
AsuHPI	GGTGA	3 cut(s)	64, 418, 776
AvaI	CYCGRG	2 cut(s)	380, 713
AvaII	GGWCC	3 cut(s)	568, 604, 1051
BaeGI	GKGCMC	2 cut(s)	703, 876
BanII	GRGCYC	1 cut(s)	703
BauI	CACGAG	1 cut(s)	734
BbrPI	CACGTG	1 cut(s)	877
Bbv12I	GWGCWC	2 cut(s)	387, 876
BbvI	GCAGC	2 cut(s)	280, 657
BccI	CCATC	5 cut(s)	56, 431, 502, 761, 874
BceAI	ACGGC	7 cut(s)	283, 398, 658, 772, 775, 826, 981
BciT130I	CCWGG	4 cut(s)	430, 443, 608, 665
BciVI	GTATCC	1 cut(s)	512
BcnI	CCSGG	3 cut(s)	76, 523, 886
BcoDI	GTCTC	1 cut(s)	377
BfaI	CTAG	2 cut(s)	350, 516
BfoI	RGCGCY	2 cut(s)	294, 522
BfuI	GTATCC	1 cut(s)	512
BglI	GCCNNNNNGGC	1 cut(s)	419
BisI	GCNGC	8 cut(s)	271, 274, 294, 399, 546, 671, 814, 849
BlsI	GCNGC	8 cut(s)	272, 275, 295, 400, 547, 672, 815, 850
Bme1390I	CCNGG	7 cut(s)	76, 430, 443, 523, 608, 665, 886
Bme18I	GGWCC	3 cut(s)	568, 604, 1051
BmeT110I	CYCGRG	2 cut(s)	380, 713
BmgT120I	GGNCC	6 cut(s)	568, 604, 699, 700, 883, 1051
BmiI	GGNNCC	2 cut(s)	80, 701
BmrFI	CCNGG	7 cut(s)	76, 430, 443, 523, 608, 665, 886
BpuMI	CCSGG	3 cut(s)	76, 523, 886
BsaAI	YACGTR	1 cut(s)	877
BsaBI	GATNNNNATC	2 cut(s)	129, 584
BsaHI	GRCGYC	1 cut(s)	411
BsaJI	CCNNGG	8 cut(s)	159, 265, 522, 589, 714, 788, 939, 997
BsaXI	ACNNNNNCTCC	2 cut(s)	431, 461
Bsc4I	CCNNNNNNNGG	5 cut(s)	160, 429, 648, 826, 892
Bse8I	GATNNNNATC	2 cut(s)	129, 584
BseBI	CCWGG	4 cut(s)	430, 443, 608, 665
BseDI	CCNNGG	8 cut(s)	159, 265, 522, 589, 714, 788, 939, 997
BseGI	GGATG	2 cut(s)	140, 165
BseJI	GATNNNNATC	2 cut(s)	129, 584
BseLI	CCNNNNNNNGG	5 cut(s)	160, 429, 648, 826, 892
BseMII	CTCAG	2 cut(s)	314, 695
BseRI	GAGGAG	2 cut(s)	242, 439
BseSI	GKGCMC	2 cut(s)	703, 876
BseXI	GCAGC	2 cut(s)	280, 657
BseYI	CCCAGC	1 cut(s)	343
Bsh1236I	CGCG	4 cut(s)	545, 555, 848, 867
BshFI	GGCC	5 cut(s)	422, 446, 701, 884, 938
BsiHKAI	GWGCWC	2 cut(s)	387, 876
BsiHKCI	CYCGRG	2 cut(s)	380, 713
BsiSI	CCGG	3 cut(s)	76, 522, 886
BslI	CCNNNNNNNGG	5 cut(s)	160, 429, 648, 826, 892
BsmAI	GTCTC	1 cut(s)	377
BsmBI	CGTCTC	1 cut(s)	377
BsnI	GGCC	5 cut(s)	422, 446, 701, 884, 938
BsoBI	CYCGRG	2 cut(s)	380, 713
Bsp120I	GGGCCC	1 cut(s)	699
Bsp1286I	GDGCHC	3 cut(s)	387, 703, 876
Bsp143I	GATC	8 cut(s)	7, 130, 579, 585, 645, 724, 774, 843
BspANI	GGCC	5 cut(s)	422, 446, 701, 884, 938
BspCNI	CTCAG	2 cut(s)	313, 696
BspFNI	CGCG	4 cut(s)	545, 555, 848, 867
BspLI	GGNNCC	2 cut(s)	80, 701
BspPI	GGATC	3 cut(s)	125, 580, 782
BssECI	CCNNGG	8 cut(s)	159, 265, 522, 589, 714, 788, 939, 997
BssMI	GATC	8 cut(s)	7, 130, 579, 585, 645, 724, 774, 843
BssNI	GRCGYC	1 cut(s)	411
BssSI	CACGAG	1 cut(s)	734
BssT1I	CCWWGG	2 cut(s)	159, 589
Bst2BI	CACGAG	1 cut(s)	734
Bst2UI	CCWGG	4 cut(s)	430, 443, 608, 665
Bst4CI	ACNGT	3 cut(s)	371, 783, 855
Bst6I	CTCTTC	2 cut(s)	209, 290
BstACI	GRCGYC	1 cut(s)	411
BstBAI	YACGTR	1 cut(s)	877
BstDEI	CTNAG	2 cut(s)	300, 704
BstDSI	CCRYGG	3 cut(s)	265, 788, 997
BstENI	CCTNNNNNAGG	1 cut(s)	158
BstF5I	GGATG	2 cut(s)	140, 165
BstFNI	CGCG	4 cut(s)	545, 555, 848, 867
BstH2I	RGCGCY	2 cut(s)	294, 522
BstHHI	GCGC	4 cut(s)	293, 521, 557, 986
BstKTI	GATC	8 cut(s)	10, 133, 582, 588, 648, 727, 777, 846
BstMAI	GTCTC	1 cut(s)	377
BstMBI	GATC	8 cut(s)	7, 130, 579, 585, 645, 724, 774, 843
BstMWI	GCNNNNNNNGC	5 cut(s)	419, 554, 810, 981, 1008
BstNI	CCWGG	4 cut(s)	430, 443, 608, 665
BstSCI	CCNGG	7 cut(s)	74, 428, 441, 521, 606, 663, 884
BstSLI	GKGCMC	2 cut(s)	703, 876
BstUI	CGCG	4 cut(s)	545, 555, 848, 867
BstV1I	GCAGC	2 cut(s)	280, 657
BstX2I	RGATCY	1 cut(s)	585
BstYI	RGATCY	1 cut(s)	585
BsuI	GTATCC	1 cut(s)	512
BsuRI	GGCC	5 cut(s)	422, 446, 701, 884, 938
BtgI	CCRYGG	3 cut(s)	265, 788, 997
BtsCI	GGATG	2 cut(s)	140, 165
BtsIMutI	CAGTG	1 cut(s)	851
CaiI	CAGNNNCTG	1 cut(s)	670
CfoI	GCGC	4 cut(s)	293, 521, 557, 986
Cfr13I	GGNCC	6 cut(s)	568, 604, 699, 700, 883, 1051
CseI	GACGC	1 cut(s)	419
CsiI	ACCWGGT	1 cut(s)	663
Csp6I	GTAC	2 cut(s)	367, 808
CspCI	CAANNNNNGTGG	2 cut(s)	722, 757
CviAII	CATG	3 cut(s)	908, 990, 1013
CviQI	GTAC	2 cut(s)	367, 808
DdeI	CTNAG	2 cut(s)	300, 704
DpnI	GATC	8 cut(s)	9, 132, 581, 587, 647, 726, 776, 845
DpnII	GATC	8 cut(s)	7, 130, 579, 585, 645, 724, 774, 843
EaeI	YGGCCR	1 cut(s)	420
Eam1104I	CTCTTC	2 cut(s)	209, 290
EarI	CTCTTC	2 cut(s)	209, 290
EciI	GGCGGA	1 cut(s)	188
Eco130I	CCWWGG	2 cut(s)	159, 589
Eco147I	AGGCCT	1 cut(s)	446
Eco24I	GRGCYC	1 cut(s)	703
Eco47I	GGWCC	3 cut(s)	568, 604, 1051
Eco47III	AGCGCT	1 cut(s)	292
Eco57I	CTGAAG	1 cut(s)	271
Eco72I	CACGTG	1 cut(s)	877
Eco88I	CYCGRG	2 cut(s)	380, 713
EcoNI	CCTNNNNNAGG	1 cut(s)	158
EcoO109I	RGGNCCY	1 cut(s)	700
EcoRII	CCWGG	4 cut(s)	428, 441, 606, 663
EcoT14I	CCWWGG	2 cut(s)	159, 589
EcoT38I	GRGCYC	1 cut(s)	703
ErhI	CCWWGG	2 cut(s)	159, 589
Esp3I	CGTCTC	1 cut(s)	377
FaeI	CATG	3 cut(s)	911, 993, 1016
FaiI	YATR	5 cut(s)	755, 909, 951, 991, 1014
FatI	CATG	3 cut(s)	907, 989, 1012
FauI	CCCGC	5 cut(s)	127, 403, 797, 828, 860
Fnu4HI	GCNGC	8 cut(s)	271, 274, 294, 399, 546, 671, 814, 849
FokI	GGATG	2 cut(s)	127, 152
FriOI	GRGCYC	1 cut(s)	703
Fsp4HI	GCNGC	8 cut(s)	271, 274, 294, 399, 546, 671, 814, 849
FspBI	CTAG	2 cut(s)	350, 516
FspI	TGCGCA	1 cut(s)	985
GlaI	GCGC	4 cut(s)	292, 520, 556, 985
GluI	GCNGC	8 cut(s)	271, 274, 294, 399, 546, 671, 814, 849
GsaI	CCCAGC	1 cut(s)	347
HaeII	RGCGCY	2 cut(s)	294, 522
HaeIII	GGCC	5 cut(s)	422, 446, 701, 884, 938
HapII	CCGG	3 cut(s)	76, 522, 886
HgaI	GACGC	1 cut(s)	419
HhaI	GCGC	4 cut(s)	293, 521, 557, 986
Hin1I	GRCGYC	1 cut(s)	411
Hin1II	CATG	3 cut(s)	911, 993, 1016
Hin6I	GCGC	4 cut(s)	291, 519, 555, 984
HinP1I	GCGC	4 cut(s)	291, 519, 555, 984
HincII	GTYRAC	2 cut(s)	628, 658
HindII	GTYRAC	2 cut(s)	628, 658
HinfI	GANTC	7 cut(s)	110, 125, 464, 638, 706, 860, 1041
HpaII	CCGG	3 cut(s)	76, 522, 886
HphI	GGTGA	3 cut(s)	64, 418, 776
Hpy166II	GTNNAC	5 cut(s)	538, 568, 628, 658, 874
Hpy188I	TCNGA	4 cut(s)	130, 562, 643, 779
Hpy188III	TCNNGA	4 cut(s)	173, 505, 583, 728
Hpy8I	GTNNAC	5 cut(s)	538, 568, 628, 658, 874
Hpy99I	CGWCG	5 cut(s)	365, 410, 413, 461, 1036
HpyAV	CCTTC	3 cut(s)	202, 765, 832
HpyCH4III	ACNGT	3 cut(s)	371, 783, 855
HpyCH4IV	ACGT	1 cut(s)	876
HpyCH4V	TGCA	1 cut(s)	874
HpyF10VI	GCNNNNNNNGC	5 cut(s)	419, 554, 810, 981, 1008
HpyF3I	CTNAG	2 cut(s)	300, 704
HpySE526I	ACGT	1 cut(s)	876
Hsp92I	GRCGYC	1 cut(s)	411
Hsp92II	CATG	3 cut(s)	911, 993, 1016
HspAI	GCGC	4 cut(s)	291, 519, 555, 984
Kzo9I	GATC	8 cut(s)	7, 130, 579, 585, 645, 724, 774, 843
LmnI	GCTCC	2 cut(s)	84, 916
Lsp1109I	GCAGC	2 cut(s)	280, 657
MabI	ACCWGGT	1 cut(s)	663
MaeI	CTAG	2 cut(s)	350, 516
MaeII	ACGT	1 cut(s)	876
MaeIII	GTNAC	3 cut(s)	728, 861, 1015
MalI	GATC	8 cut(s)	9, 132, 581, 587, 647, 726, 776, 845
MboI	GATC	8 cut(s)	7, 130, 579, 585, 645, 724, 774, 843
MboII	GAAGA	2 cut(s)	196, 277
MflI	RGATCY	1 cut(s)	585
MhlI	GDGCHC	3 cut(s)	387, 703, 876
MluCI	AATT	2 cut(s)	86, 965
MlyI	GAGTC	3 cut(s)	119, 715, 869
MmeI	TCCRAC	1 cut(s)	837
MseI	TTAA	3 cut(s)	891, 960, 1066
MspA1I	CMGCKG	1 cut(s)	823
MspI	CCGG	3 cut(s)	76, 522, 886
MspR9I	CCNGG	7 cut(s)	76, 430, 443, 523, 608, 665, 886
MvaI	CCWGG	4 cut(s)	430, 443, 608, 665
MvnI	CGCG	4 cut(s)	545, 555, 848, 867
MwoI	GCNNNNNNNGC	5 cut(s)	419, 554, 810, 981, 1008
NciI	CCSGG	3 cut(s)	76, 523, 886
NdeII	GATC	8 cut(s)	7, 130, 579, 585, 645, 724, 774, 843
NlaIII	CATG	3 cut(s)	911, 993, 1016
NlaIV	GGNNCC	2 cut(s)	80, 701
NmeAIII	GCCGAG	1 cut(s)	964
NmuCI	GTSAC	3 cut(s)	728, 861, 1015
NsbI	TGCGCA	1 cut(s)	985
PceI	AGGCCT	1 cut(s)	446
PcsI	WCGNNNNNNNCGW	1 cut(s)	411
PfeI	GAWTC	4 cut(s)	125, 464, 638, 1041
PflMI	CCANNNNNTGG	1 cut(s)	429
PkrI	GCNGC	8 cut(s)	272, 275, 295, 400, 547, 672, 815, 850
PleI	GAGTC	3 cut(s)	118, 714, 868
PmaCI	CACGTG	1 cut(s)	877
PmlI	CACGTG	1 cut(s)	877
PpsI	GAGTC	3 cut(s)	118, 714, 868
Ppu21I	YACGTR	1 cut(s)	877
Psp6I	CCWGG	4 cut(s)	428, 441, 606, 663
PspCI	CACGTG	1 cut(s)	877
PspFI	CCCAGC	1 cut(s)	343
PspGI	CCWGG	4 cut(s)	428, 441, 606, 663
PspN4I	GGNNCC	2 cut(s)	80, 701
PspOMI	GGGCCC	1 cut(s)	699
PspPI	GGNCC	6 cut(s)	568, 604, 699, 700, 883, 1051
PstNI	CAGNNNCTG	1 cut(s)	670
PsuI	RGATCY	1 cut(s)	585
RsaI	GTAC	2 cut(s)	368, 809
RsaNI	GTAC	2 cut(s)	367, 808
SaqAI	TTAA	3 cut(s)	891, 960, 1066
SatI	GCNGC	8 cut(s)	271, 274, 294, 399, 546, 671, 814, 849
Sau3AI	GATC	8 cut(s)	7, 130, 579, 585, 645, 724, 774, 843
Sau96I	GGNCC	6 cut(s)	568, 604, 699, 700, 883, 1051
SchI	GAGTC	3 cut(s)	119, 715, 869
ScrFI	CCNGG	7 cut(s)	76, 430, 443, 523, 608, 665, 886
SduI	GDGCHC	3 cut(s)	387, 703, 876
SetI	ASST	8 cut(s)	194, 246, 431, 573, 653, 669, 879, 921
SexAI	ACCWGGT	1 cut(s)	663
SinI	GGWCC	3 cut(s)	568, 604, 1051
Sse9I	AATT	2 cut(s)	86, 965
SseBI	AGGCCT	1 cut(s)	446
SspMI	CTAG	2 cut(s)	350, 516
StuI	AGGCCT	1 cut(s)	446
StyD4I	CCNGG	7 cut(s)	74, 428, 441, 521, 606, 663, 884
StyI	CCWWGG	2 cut(s)	159, 589
TaaI	ACNGT	3 cut(s)	371, 783, 855
TaiI	ACGT	1 cut(s)	879
TaqI	TCGA	4 cut(s)	24, 174, 363, 456
TaqII	GACCGA	1 cut(s)	1039
TasI	AATT	2 cut(s)	86, 965
TauI	GCSGC	6 cut(s)	273, 276, 401, 548, 816, 851
TfiI	GAWTC	4 cut(s)	125, 464, 638, 1041
Tru1I	TTAA	3 cut(s)	891, 960, 1066
Tru9I	TTAA	3 cut(s)	891, 960, 1066
TscAI	CASTG	1 cut(s)	858
TseFI	GTSAC	3 cut(s)	728, 861, 1015
TseI	GCWGC	2 cut(s)	293, 670
Tsp45I	GTSAC	3 cut(s)	728, 861, 1015
TspDTI	ATGAA	2 cut(s)	770, 896
TspGWI	ACGGA	5 cut(s)	349, 472, 474, 650, 738
TspRI	CASTG	1 cut(s)	858
Van91I	CCANNNNNTGG	1 cut(s)	429
VneI	GTGCAC	1 cut(s)	872
VpaK11BI	GGWCC	3 cut(s)	568, 604, 1051
XagI	CCTNNNNNAGG	1 cut(s)	158
XapI	RAATTY	1 cut(s)	965
XspI	CTAG	2 cut(s)	350, 516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.