Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000677.1

Orthogroup ID

OG0004529

Physical Location & Seq

Genomic Coordinates Reverse (-)

5867 .. 7160

Gene Structure 1294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

atgactaagctccggagcagaactaggaatgagcaaacggggaattcccccgcccccgcgcccccgttccccgtctggggatattatcagatgggggattccccgccccgcccccgcggatcctcacggatcgcccttaggatcatcctctcaaaactatatgaagatccaacggttggatcgtcccggatcgcccttagaatcatcctcacaaaattgtacgacgatccaatggctgagaagattgccgctttggtcaaagctgccaatgtctctgtggagtcctactggcctggtttgtttgccaagcttgctgagaagagagacatcggtgacctcatcttgaatgttggtgccggaggcggtggcggtgctgttgccgttgctgccccaggtgcaggcgccgccgcccctgctgcagctgctccagtggaagagaagaaggaggagccaaaggaagagagtgatgaagatatgggattcagcttgttcgactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0008047 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009893 GO:0009987 GO:0010467 GO:0010562 GO:0010604 GO:0015934 GO:0016020 GO:0019207 GO:0019209 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0022625 GO:0022626 GO:0030234 GO:0030295 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0034641 GO:0034645 GO:0042325 GO:0042327 GO:0042788 GO:0043043 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043549 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071944 GO:0080090 GO:0098772 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

165

Amino Acids

17.47

Weight (kDa)

5.63

Isoelectric Point (pI)

60.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_60s	PF00428	77 - 164	7.7e-26	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004529)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02400
rosa_chinensis	RchiOBHm_Chr5g0003611 RchiOBHm_Chr5g0003631
rosa_laevigata	RLG00000021398 RLG00000021400 RLG00000031156 RLG00000031158 RLG00000031159
rosa_multiflora	Rmu_sc0000677.1_g000002 Rmu_sc0003827.1_g000007 Rmu_sc0004279.1_g000001 Rmu_sc0008615.1_g000001 Rmu_sc0029518.1_g000001 Rmu_sc0037047.1_g000001 Rmu_ssc0000231.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072310 Rroxscaffold_1G00072360
rosa_rugosa	Rorug04G0405000 Rorug04G0405100 Rorug04G0405200
rosa_samantha	Rh2BG581800 Rh2BG581900 Rh2CG551700 Rh5AG031900 Rh5AG032000 Rh5BG030800 Rh5BG030900 Rh5CG034600 Rh5CG034700 Rh5DG031600
rosa_wichuraiana	Rw2G047160 Rw5G002980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	353, 401
AccB7I	CCANNNNNTGG	1 cut(s)	176
AccII	CGCG	2 cut(s)	59, 117
AccIII	TCCGGA	1 cut(s)	12
AclWI	GGATC	8 cut(s)	114, 127, 137, 149, 161, 187, 197, 221
AcsI	RAATTY	1 cut(s)	43
AcyI	GRCGYC	1 cut(s)	402
AfaI	GTAC	1 cut(s)	221
AfiI	CCNNNNNNNGG	4 cut(s)	76, 77, 176, 398
AgsI	TTSAA	1 cut(s)	346
AjnI	CCWGG	2 cut(s)	292, 391
AluBI	AGCT	5 cut(s)	10, 263, 310, 422, 486
AluI	AGCT	5 cut(s)	10, 263, 310, 422, 486
Alw26I	GTCTC	2 cut(s)	277, 318
AlwI	GGATC	8 cut(s)	114, 127, 137, 149, 161, 187, 197, 221
Aor13HI	TCCGGA	1 cut(s)	12
AoxI	GGCC	1 cut(s)	290
ApeKI	GCWGC	5 cut(s)	263, 386, 416, 419, 422
ApoI	RAATTY	1 cut(s)	43
AspLEI	GCGC	2 cut(s)	61, 404
AsuC2I	CCSGG	1 cut(s)	187
AsuHPI	GGTGA	1 cut(s)	344
AxyI	CCTNAGG	1 cut(s)	137
BamHI	GGATCC	1 cut(s)	119
BanI	GGYRCC	2 cut(s)	353, 401
BbvI	GCAGC	5 cut(s)	250, 373, 403, 409, 431
BccI	CCATC	1 cut(s)	85
BceAI	ACGGC	1 cut(s)	365
BciT130I	CCWGG	2 cut(s)	294, 393
BcnI	CCSGG	1 cut(s)	187
BcoDI	GTCTC	2 cut(s)	277, 318
BfaI	CTAG	2 cut(s)	24, 496
BfmI	CTRYAG	1 cut(s)	417
BfoI	RGCGCY	1 cut(s)	405
BisI	GCNGC	8 cut(s)	249, 264, 387, 405, 408, 417, 420, 423
BlsI	GCNGC	8 cut(s)	250, 265, 388, 406, 409, 418, 421, 424
Bme1390I	CCNGG	3 cut(s)	187, 294, 393
BmiI	GGNNCC	4 cut(s)	121, 355, 403, 450
BmrFI	CCNGG	3 cut(s)	187, 294, 393
BpmI	CTGGAG	1 cut(s)	411
BpuMI	CCSGG	1 cut(s)	187
BsaHI	GRCGYC	1 cut(s)	402
BsaJI	CCNNGG	2 cut(s)	115, 391
BsaWI	WCCGGW	1 cut(s)	12
Bsc4I	CCNNNNNNNGG	4 cut(s)	76, 77, 176, 398
Bse1I	ACTGG	2 cut(s)	293, 428
Bse21I	CCTNAGG	1 cut(s)	137
BseAI	TCCGGA	1 cut(s)	12
BseBI	CCWGG	2 cut(s)	294, 393
BseDI	CCNNGG	2 cut(s)	115, 391
BseGI	GGATG	2 cut(s)	144, 204
BseLI	CCNNNNNNNGG	4 cut(s)	76, 77, 176, 398
BseMII	CTCAG	2 cut(s)	228, 306
BseNI	ACTGG	2 cut(s)	293, 428
BseRI	GAGGAG	1 cut(s)	461
BseXI	GCAGC	5 cut(s)	250, 373, 403, 409, 431
BsgI	GTGCAG	1 cut(s)	417
Bsh1236I	CGCG	2 cut(s)	59, 117
BshFI	GGCC	1 cut(s)	292
BshNI	GGYRCC	2 cut(s)	353, 401
BsiSI	CCGG	3 cut(s)	13, 187, 357
BslFI	GGGAC	1 cut(s)	169
BslI	CCNNNNNNNGG	4 cut(s)	76, 77, 176, 398
BsmAI	GTCTC	2 cut(s)	277, 318
BsmFI	GGGAC	1 cut(s)	169
BsnI	GGCC	1 cut(s)	292
Bsp13I	TCCGGA	1 cut(s)	12
Bsp143I	GATC	7 cut(s)	119, 129, 141, 166, 179, 189, 226
BspANI	GGCC	1 cut(s)	292
BspCNI	CTCAG	2 cut(s)	229, 307
BspEI	TCCGGA	1 cut(s)	12
BspFNI	CGCG	2 cut(s)	59, 117
BspLI	GGNNCC	4 cut(s)	121, 355, 403, 450
BspMAI	CTGCAG	1 cut(s)	421
BspPI	GGATC	8 cut(s)	114, 127, 137, 149, 161, 187, 197, 221
BspT107I	GGYRCC	2 cut(s)	353, 401
BsrI	ACTGG	2 cut(s)	293, 428
BssECI	CCNNGG	2 cut(s)	115, 391
BssMI	GATC	7 cut(s)	119, 129, 141, 166, 179, 189, 226
BssNI	GRCGYC	1 cut(s)	402
Bst2UI	CCWGG	2 cut(s)	294, 393
Bst4CI	ACNGT	1 cut(s)	175
Bst6I	CTCTTC	3 cut(s)	314, 429, 453
BstACI	GRCGYC	1 cut(s)	402
BstC8I	GCNNGC	2 cut(s)	312, 400
BstDEI	CTNAG	5 cut(s)	6, 137, 197, 237, 315
BstDSI	CCRYGG	1 cut(s)	115
BstEII	GGTNACC	1 cut(s)	332
BstF5I	GGATG	2 cut(s)	144, 204
BstFNI	CGCG	2 cut(s)	59, 117
BstH2I	RGCGCY	1 cut(s)	405
BstHHI	GCGC	2 cut(s)	61, 404
BstKTI	GATC	7 cut(s)	122, 132, 144, 169, 182, 192, 229
BstMAI	GTCTC	2 cut(s)	277, 318
BstMBI	GATC	7 cut(s)	119, 129, 141, 166, 179, 189, 226
BstMWI	GCNNNNNNNGC	7 cut(s)	311, 386, 395, 404, 413, 416, 422
BstNI	CCWGG	2 cut(s)	294, 393
BstPI	GGTNACC	1 cut(s)	332
BstSCI	CCNGG	3 cut(s)	185, 292, 391
BstSFI	CTRYAG	1 cut(s)	417
BstUI	CGCG	2 cut(s)	59, 117
BstV1I	GCAGC	5 cut(s)	250, 373, 403, 409, 431
BstX2I	RGATCY	2 cut(s)	119, 166
BstYI	RGATCY	2 cut(s)	119, 166
Bsu36I	CCTNAGG	1 cut(s)	137
BsuRI	GGCC	1 cut(s)	292
BtgI	CCRYGG	1 cut(s)	115
BtsCI	GGATG	2 cut(s)	144, 204
BtsIMutI	CAGTG	1 cut(s)	435
Cac8I	GCNNGC	2 cut(s)	312, 400
CfoI	GCGC	2 cut(s)	61, 404
Cfr42I	CCGCGG	1 cut(s)	118
Csp6I	GTAC	1 cut(s)	220
CviJI	RGCY	8 cut(s)	10, 236, 263, 292, 310, 422, 451, 486
CviKI_1	RGCY	8 cut(s)	10, 236, 263, 292, 310, 422, 451, 486
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	5 cut(s)	6, 137, 197, 237, 315
DinI	GGCGCC	1 cut(s)	403
DpnI	GATC	7 cut(s)	121, 131, 143, 168, 181, 191, 228
DpnII	GATC	7 cut(s)	119, 129, 141, 166, 179, 189, 226
Eam1104I	CTCTTC	3 cut(s)	314, 429, 453
EarI	CTCTTC	3 cut(s)	314, 429, 453
Eco81I	CCTNAGG	1 cut(s)	137
Eco91I	GGTNACC	1 cut(s)	332
EcoO65I	GGTNACC	1 cut(s)	332
EcoRI	GAATTC	1 cut(s)	43
EcoRII	CCWGG	2 cut(s)	292, 391
EgeI	GGCGCC	1 cut(s)	403
EheI	GGCGCC	1 cut(s)	403
FaiI	YATR	3 cut(s)	160, 162, 476
FaqI	GGGAC	1 cut(s)	169
FauI	CCCGC	5 cut(s)	58, 64, 111, 116, 122
Fnu4HI	GCNGC	8 cut(s)	249, 264, 387, 405, 408, 417, 420, 423
FokI	GGATG	2 cut(s)	131, 191
Fsp4HI	GCNGC	8 cut(s)	249, 264, 387, 405, 408, 417, 420, 423
FspBI	CTAG	2 cut(s)	24, 496
GlaI	GCGC	2 cut(s)	60, 403
GluI	GCNGC	8 cut(s)	249, 264, 387, 405, 408, 417, 420, 423
GsuI	CTGGAG	1 cut(s)	411
HaeII	RGCGCY	1 cut(s)	405
HaeIII	GGCC	1 cut(s)	292
HapII	CCGG	3 cut(s)	13, 187, 357
HhaI	GCGC	2 cut(s)	61, 404
Hin1I	GRCGYC	1 cut(s)	402
Hin6I	GCGC	2 cut(s)	59, 402
HinP1I	GCGC	2 cut(s)	59, 402
HindIII	AAGCTT	1 cut(s)	308
HinfI	GANTC	4 cut(s)	98, 201, 281, 480
HpaII	CCGG	3 cut(s)	13, 187, 357
HphI	GGTGA	1 cut(s)	344
Hpy188I	TCNGA	1 cut(s)	90
Hpy188III	TCNNGA	2 cut(s)	13, 343
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	1 cut(s)	436
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4V	TGCA	2 cut(s)	398, 419
HpyF10VI	GCNNNNNNNGC	7 cut(s)	311, 386, 395, 404, 413, 416, 422
HpyF3I	CTNAG	5 cut(s)	6, 137, 197, 237, 315
Hsp92I	GRCGYC	1 cut(s)	402
HspAI	GCGC	2 cut(s)	59, 402
KasI	GGCGCC	1 cut(s)	401
Kpn2I	TCCGGA	1 cut(s)	12
KspI	CCGCGG	1 cut(s)	118
Kzo9I	GATC	7 cut(s)	119, 129, 141, 166, 179, 189, 226
LmnI	GCTCC	4 cut(s)	15, 15, 430, 448
Lsp1109I	GCAGC	5 cut(s)	250, 373, 403, 409, 431
MaeI	CTAG	2 cut(s)	24, 496
MaeIII	GTNAC	1 cut(s)	332
MalI	GATC	7 cut(s)	121, 131, 143, 168, 181, 191, 228
MboI	GATC	7 cut(s)	119, 129, 141, 166, 179, 189, 226
MboII	GAAGA	7 cut(s)	176, 253, 331, 446, 451, 470, 482
MflI	RGATCY	2 cut(s)	119, 166
MluCI	AATT	2 cut(s)	43, 215
Mly113I	GGCGCC	1 cut(s)	402
MlyI	GAGTC	1 cut(s)	290
MmeI	TCCRAC	2 cut(s)	157, 194
MnlI	CCTC	6 cut(s)	133, 158, 218, 347, 353, 439
MroI	TCCGGA	1 cut(s)	12
MspA1I	CMGCKG	2 cut(s)	117, 422
MspI	CCGG	3 cut(s)	13, 187, 357
MspR9I	CCNGG	3 cut(s)	187, 294, 393
MvaI	CCWGG	2 cut(s)	294, 393
MvnI	CGCG	2 cut(s)	59, 117
MwoI	GCNNNNNNNGC	7 cut(s)	311, 386, 395, 404, 413, 416, 422
NarI	GGCGCC	1 cut(s)	402
NciI	CCSGG	1 cut(s)	187
NdeII	GATC	7 cut(s)	119, 129, 141, 166, 179, 189, 226
NlaIV	GGNNCC	4 cut(s)	121, 355, 403, 450
NmuCI	GTSAC	1 cut(s)	332
PcsI	WCGNNNNNNNCGW	1 cut(s)	179
PfeI	GAWTC	3 cut(s)	98, 201, 480
PflMI	CCANNNNNTGG	1 cut(s)	176
PfoI	TCCNGGA	1 cut(s)	185
PkrI	GCNGC	8 cut(s)	250, 265, 388, 406, 409, 418, 421, 424
PleI	GAGTC	1 cut(s)	289
PluTI	GGCGCC	1 cut(s)	405
PpsI	GAGTC	1 cut(s)	289
Psp6I	CCWGG	2 cut(s)	292, 391
PspEI	GGTNACC	1 cut(s)	332
PspGI	CCWGG	2 cut(s)	292, 391
PspN4I	GGNNCC	4 cut(s)	121, 355, 403, 450
PstI	CTGCAG	1 cut(s)	421
PsuI	RGATCY	2 cut(s)	119, 166
PvuII	CAGCTG	1 cut(s)	422
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
SacII	CCGCGG	1 cut(s)	118
SatI	GCNGC	8 cut(s)	249, 264, 387, 405, 408, 417, 420, 423
Sau3AI	GATC	7 cut(s)	119, 129, 141, 166, 179, 189, 226
SchI	GAGTC	1 cut(s)	290
ScrFI	CCNGG	3 cut(s)	187, 294, 393
SetI	ASST	7 cut(s)	12, 265, 312, 339, 397, 424, 488
SfcI	CTRYAG	1 cut(s)	417
SfoI	GGCGCC	1 cut(s)	403
Sfr303I	CCGCGG	1 cut(s)	118
SgrBI	CCGCGG	1 cut(s)	118
Sse9I	AATT	2 cut(s)	43, 215
SspDI	GGCGCC	1 cut(s)	401
SspMI	CTAG	2 cut(s)	24, 496
StyD4I	CCNGG	3 cut(s)	185, 292, 391
TaaI	ACNGT	1 cut(s)	175
TaqI	TCGA	1 cut(s)	492
TasI	AATT	2 cut(s)	43, 215
TauI	GCSGC	3 cut(s)	251, 407, 410
TfiI	GAWTC	3 cut(s)	98, 201, 480
TscAI	CASTG	1 cut(s)	435
TseFI	GTSAC	1 cut(s)	332
TseI	GCWGC	5 cut(s)	263, 386, 416, 419, 422
Tsp45I	GTSAC	1 cut(s)	332
TspDTI	ATGAA	2 cut(s)	177, 483
TspGWI	ACGGA	1 cut(s)	142
TspRI	CASTG	1 cut(s)	435
Van91I	CCANNNNNTGG	1 cut(s)	176
XapI	RAATTY	1 cut(s)	43
XcmI	CCANNNNNNNNNTGG	1 cut(s)	274
XspI	CTAG	2 cut(s)	24, 496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.