Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000697.1

Orthogroup ID

OG0002098

Physical Location & Seq

Genomic Coordinates Forward (+)

108384 .. 110707

Gene Structure 2324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

atgctctatggggctcaaaatatgaaactcacttctggcatagcaccaactgggttaggttccgggggaaattttcaatatgggtctttccccaaaaaggtttcagttagttatggaaggaattccaaggctagaactttgggacccatttgcagtgtctcatcctcaaggcctgcttctcaacctaggttcatacagcacaagcaagaagcattttggttctacaggtttttatctatagtctatgatcatgtgataaaccctgggcattggactgaggatatgagagacgatgctctcaagccggctgatctttatgacaggaatatgacagtggtagatgttggaggtggaactgggttcacaacactggggattgtgaagcatgtggatgccaaaaatgttacaattcttgaccaatcaccgcaccagcttgccaaggctaaggagaaggagcccttgaaagagtgcaagattattgaaggtgatgccgaggatctgccattcccaactgattatgccgatagatatgtctctgctggaagtatagagtactggccggatccacagcgtggaatcaaggaagcatacagggtactaaaaataggaggaaaagcctgtcttataggccctgtgtacccaaccttctggctgtctcgttttttcgcagacgtgtggatgctcttcccaacagaggaagaatacattgagtggttccaaaaggcaggtttcaaagatgttaaactaaaaagaattggtccaaagtggtaccgtggagttcgccggcatggcctgattatgggttgctctgtgacaggtgtgaagcccttaagtggggattcccctctcgagcttggtccaaaggttgaggatgtgaggaagcccgtcaatccatttgtgtttcttttccggctaattcttggagcaactgcaggagcttactatgtgctggttcccatttacatgtggatcaaagatcaaattgttccaaagggcaaacctatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

CTP_transf_like Methyltransf_11 Methyltransf_25

Protein Analysis

335

Amino Acids

37.62

Weight (kDa)

9.25

Isoelectric Point (pI)

35.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_23	PF13489	106 - 248	6e-06	Methyltransferase domain
Methyltransf_31	PF13847	107 - 211	1.4e-12	Methyltransferase domain
Ubie_methyltran	PF01209	108 - 209	2.5e-12	ubiE/COQ5 methyltransferase family
Methyltransf_25	PF13649	112 - 204	3.7e-17	Methyltransferase domain
Methyltransf_11	PF08241	113 - 207	1.4e-19	Methyltransferase domain
Methyltransf_12	PF08242	113 - 205	2.2e-10	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63410
fragaria_vesca	FvH4_2g22850 FvH4_4g01770
malus_domestica	MD03G1256900.v1.1 MD11G1277500.v1.1 MD13G1201900.v1.1 MD16G1202200.v1.1
prunus_persica	Prupe.1G023700_v2.0.a1 Prupe.1G023700_v2.0.a1 Prupe.1G023700_v2.0.a1 Prupe.1G023700_v2.0.a1 Prupe.8G233800_v2.0.a1
pyrus_communis	pycom03g20360 pycom13g17530 pycom16g17060
rosa_chinensis	RchiOBHm_Chr4g0388681 RchiOBHm_Chr4g0388811 RchiOBHm_Chr6g0289771
rosa_laevigata	RLG00000010027 RLG00000012268
rosa_multiflora	Rmu_co8119594.1_g000001 Rmu_sc0000697.1_g000014 Rmu_sc0004459.1_g000002 Rmu_sc0005640.1_g000008 Rmu_sc0016023.1_g000001 Rmu_sc0027068.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335090 Rroxscaffold_7G00177560 Rroxscaffold_7G00178080
rosa_rugosa	Rorug03G0320000 Rorug06G0206500 Rorug06G0206600
rosa_samantha	Rh4AG024800 Rh4BG017800 Rh4CG026800 Rh4CG027500 Rh4DG018100 Rh6AG318300 Rh6BG325600 Rh6CG331400 Rh6DG316900
rosa_wichuraiana	Rw4G001730 Rw4G001770 Rw6G027460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	716
Acc65I	GGTACC	1 cut(s)	768
AccB1I	GGYRCC	1 cut(s)	768
AccB7I	CCANNNNNTGG	1 cut(s)	572
AciI	CCGC	1 cut(s)	425
AclWI	GGATC	4 cut(s)	504, 557, 570, 977
AcoI	YGGCCR	1 cut(s)	557
AcsI	RAATTY	2 cut(s)	70, 121
AdeI	CACNNNGTG	1 cut(s)	572
AfaI	GTAC	4 cut(s)	554, 597, 638, 770
AfiI	CCNNNNNNNGG	6 cut(s)	97, 572, 694, 799, 833, 834
AflII	CTTAAG	1 cut(s)	829
AflIII	ACRYGT	2 cut(s)	672, 963
AgsI	TTSAA	4 cut(s)	77, 463, 482, 733
AjiI	CACGTC	1 cut(s)	673
AjnI	CCWGG	1 cut(s)	262
AluBI	AGCT	3 cut(s)	433, 853, 938
AluI	AGCT	3 cut(s)	433, 853, 938
Alw26I	GTCTC	4 cut(s)	163, 282, 538, 660
AlwI	GGATC	4 cut(s)	504, 557, 570, 977
Ama87I	CYCGRG	1 cut(s)	848
AoxI	GGCC	4 cut(s)	170, 557, 628, 790
ApoI	RAATTY	2 cut(s)	70, 121
Asp700I	GAANNNNTTC	1 cut(s)	121
Asp718I	GGTACC	1 cut(s)	768
AspA2I	CCTAGG	1 cut(s)	185
AspS9I	GGNCC	4 cut(s)	143, 629, 758, 857
AsuC2I	CCSGG	1 cut(s)	64
AsuHPI	GGTGA	2 cut(s)	414, 497
AvaI	CYCGRG	1 cut(s)	848
AvaII	GGWCC	3 cut(s)	143, 758, 857
AvrII	CCTAGG	1 cut(s)	185
BamHI	GGATCC	1 cut(s)	562
BanI	GGYRCC	1 cut(s)	768
BanII	GRGCYC	2 cut(s)	16, 459
BarI	GAAGNNNNNNTAC	2 cut(s)	629, 661
BciT130I	CCWGG	1 cut(s)	264
BclI	TGATCA	1 cut(s)	247
BcnI	CCSGG	1 cut(s)	64
BcoDI	GTCTC	4 cut(s)	163, 282, 538, 660
BfaI	CTAG	2 cut(s)	132, 186
BfmI	CTRYAG	3 cut(s)	223, 237, 930
BfrI	CTTAAG	1 cut(s)	829
BfuAI	ACCTGC	1 cut(s)	716
BglI	GCCNNNNNGGC	1 cut(s)	789
BlnI	CCTAGG	1 cut(s)	185
BmcAI	AGTACT	1 cut(s)	554
Bme1390I	CCNGG	2 cut(s)	64, 264
Bme18I	GGWCC	3 cut(s)	143, 758, 857
BmeT110I	CYCGRG	1 cut(s)	848
BmgBI	CACGTC	1 cut(s)	673
BmgT120I	GGNCC	4 cut(s)	143, 629, 758, 857
BmiI	GGNNCC	8 cut(s)	61, 144, 145, 456, 564, 716, 770, 954
BmrFI	CCNGG	2 cut(s)	64, 264
BmrI	ACTGGG	3 cut(s)	60, 366, 380
BmsI	GCATC	4 cut(s)	283, 382, 478, 669
BmuI	ACTGGG	3 cut(s)	60, 366, 380
Bpu10I	CCTNAGC	1 cut(s)	444
BpuEI	CTTGAG	2 cut(s)	151, 284
BpuMI	CCSGG	1 cut(s)	64
BsaJI	CCNNGG	8 cut(s)	63, 126, 185, 262, 263, 438, 492, 772
Bsc4I	CCNNNNNNNGG	6 cut(s)	97, 572, 694, 799, 833, 834
Bse118I	RCCGGY	2 cut(s)	304, 783
Bse1I	ACTGG	4 cut(s)	55, 361, 375, 560
BseBI	CCWGG	1 cut(s)	264
BseDI	CCNNGG	8 cut(s)	63, 126, 185, 262, 263, 438, 492, 772
BseGI	GGATG	4 cut(s)	161, 397, 684, 877
BseLI	CCNNNNNNNGG	6 cut(s)	97, 572, 694, 799, 833, 834
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	4 cut(s)	55, 361, 375, 560
BshFI	GGCC	4 cut(s)	172, 559, 630, 792
BshNI	GGYRCC	1 cut(s)	768
BsiHKCI	CYCGRG	1 cut(s)	848
BsiSI	CCGG	5 cut(s)	63, 305, 560, 784, 910
BslFI	GGGAC	1 cut(s)	156
BslI	CCNNNNNNNGG	6 cut(s)	97, 572, 694, 799, 833, 834
BsmAI	GTCTC	4 cut(s)	163, 282, 538, 660
BsmBI	CGTCTC	1 cut(s)	282
BsmFI	GGGAC	1 cut(s)	156
BsnI	GGCC	4 cut(s)	172, 559, 630, 792
BsoBI	CYCGRG	1 cut(s)	848
Bsp1286I	GDGCHC	2 cut(s)	16, 459
Bsp143I	GATC	6 cut(s)	247, 310, 496, 562, 969, 976
BspACI	CCGC	1 cut(s)	425
BspANI	GGCC	4 cut(s)	172, 559, 630, 792
BspCNI	CTCAG	1 cut(s)	268
BspLI	GGNNCC	8 cut(s)	61, 144, 145, 456, 564, 716, 770, 954
BspMAI	CTGCAG	1 cut(s)	934
BspMI	ACCTGC	1 cut(s)	716
BspPI	GGATC	4 cut(s)	504, 557, 570, 977
BspQI	GCTCTTC	1 cut(s)	689
BspT107I	GGYRCC	1 cut(s)	768
BspTI	CTTAAG	1 cut(s)	829
BsrFI	RCCGGY	2 cut(s)	304, 783
BsrI	ACTGG	4 cut(s)	55, 361, 375, 560
BssAI	RCCGGY	2 cut(s)	304, 783
BssECI	CCNNGG	8 cut(s)	63, 126, 185, 262, 263, 438, 492, 772
BssMI	GATC	6 cut(s)	247, 310, 496, 562, 969, 976
BssT1I	CCWWGG	3 cut(s)	126, 185, 438
Bst2UI	CCWGG	1 cut(s)	264
Bst4CI	ACNGT	2 cut(s)	334, 773
Bst6I	CTCTTC	1 cut(s)	689
BstAFI	CTTAAG	1 cut(s)	829
BstC8I	GCNNGC	4 cut(s)	174, 306, 435, 785
BstDEI	CTNAG	2 cut(s)	276, 444
BstDSI	CCRYGG	1 cut(s)	772
BstF5I	GGATG	4 cut(s)	161, 397, 684, 877
BstKTI	GATC	6 cut(s)	250, 313, 499, 565, 972, 979
BstMAI	GTCTC	4 cut(s)	163, 282, 538, 660
BstMBI	GATC	6 cut(s)	247, 310, 496, 562, 969, 976
BstMWI	GCNNNNNNNGC	1 cut(s)	789
BstNI	CCWGG	1 cut(s)	264
BstNSI	RCATGY	2 cut(s)	389, 967
BstSCI	CCNGG	2 cut(s)	62, 262
BstSFI	CTRYAG	3 cut(s)	223, 237, 930
BstX2I	RGATCY	2 cut(s)	496, 562
BstXI	CCANNNNNNTGG	1 cut(s)	648
BstYI	RGATCY	2 cut(s)	496, 562
BsuRI	GGCC	4 cut(s)	172, 559, 630, 792
BtgI	CCRYGG	1 cut(s)	772
BtrI	CACGTC	1 cut(s)	673
BtsCI	GGATG	4 cut(s)	161, 397, 684, 877
BtsI	GCAGTG	1 cut(s)	160
BtsIMutI	CAGTG	3 cut(s)	160, 339, 368
BveI	ACCTGC	1 cut(s)	716
Cac8I	GCNNGC	4 cut(s)	174, 306, 435, 785
Cfr10I	RCCGGY	2 cut(s)	304, 783
Cfr13I	GGNCC	4 cut(s)	143, 629, 758, 857
Csp6I	GTAC	4 cut(s)	553, 596, 637, 769
CviAII	CATG	4 cut(s)	251, 386, 788, 964
CviQI	GTAC	4 cut(s)	553, 596, 637, 769
DdeI	CTNAG	2 cut(s)	276, 444
DpnI	GATC	6 cut(s)	249, 312, 498, 564, 971, 978
DpnII	GATC	6 cut(s)	247, 310, 496, 562, 969, 976
DraIII	CACNNNGTG	1 cut(s)	572
EaeI	YGGCCR	1 cut(s)	557
Eam1104I	CTCTTC	1 cut(s)	689
EarI	CTCTTC	1 cut(s)	689
Eco130I	CCWWGG	3 cut(s)	126, 185, 438
Eco147I	AGGCCT	1 cut(s)	172
Eco24I	GRGCYC	2 cut(s)	16, 459
Eco47I	GGWCC	3 cut(s)	143, 758, 857
Eco88I	CYCGRG	1 cut(s)	848
EcoO109I	RGGNCCY	2 cut(s)	143, 629
EcoRI	GAATTC	1 cut(s)	121
EcoRII	CCWGG	1 cut(s)	262
EcoT14I	CCWWGG	3 cut(s)	126, 185, 438
EcoT38I	GRGCYC	2 cut(s)	16, 459
ErhI	CCWWGG	3 cut(s)	126, 185, 438
Esp3I	CGTCTC	1 cut(s)	282
FaeI	CATG	4 cut(s)	254, 389, 791, 967
FalI	AAGNNNNNCTT	6 cut(s)	160, 192, 443, 475, 606, 638
FaqI	GGGAC	1 cut(s)	156
FatI	CATG	4 cut(s)	250, 385, 787, 963
FbaI	TGATCA	1 cut(s)	247
FokI	GGATG	4 cut(s)	148, 404, 691, 884
FriOI	GRGCYC	2 cut(s)	16, 459
FspBI	CTAG	2 cut(s)	132, 186
HaeIII	GGCC	4 cut(s)	172, 559, 630, 792
HapII	CCGG	5 cut(s)	63, 305, 560, 784, 910
Hin1II	CATG	4 cut(s)	254, 389, 791, 967
HinfI	GANTC	2 cut(s)	576, 839
HpaII	CCGG	5 cut(s)	63, 305, 560, 784, 910
HphI	GGTGA	2 cut(s)	414, 497
Hpy166II	GTNNAC	2 cut(s)	363, 637
Hpy188I	TCNGA	1 cut(s)	1007
Hpy188III	TCNNGA	2 cut(s)	413, 848
Hpy8I	GTNNAC	2 cut(s)	363, 637
HpyAV	CCTTC	4 cut(s)	111, 445, 476, 655
HpyCH4III	ACNGT	2 cut(s)	334, 773
HpyCH4IV	ACGT	1 cut(s)	672
HpyCH4V	TGCA	3 cut(s)	153, 471, 932
HpyF10VI	GCNNNNNNNGC	1 cut(s)	789
HpyF3I	CTNAG	2 cut(s)	276, 444
HpySE526I	ACGT	1 cut(s)	672
Hsp92II	CATG	4 cut(s)	254, 389, 791, 967
KflI	GGGWCCC	1 cut(s)	143
KpnI	GGTACC	1 cut(s)	772
KroI	GCCGGC	2 cut(s)	304, 783
KroNI	GCCGGC	2 cut(s)	306, 785
Ksp22I	TGATCA	1 cut(s)	247
Kzo9I	GATC	6 cut(s)	247, 310, 496, 562, 969, 976
LguI	GCTCTTC	1 cut(s)	689
LmnI	GCTCC	3 cut(s)	454, 923, 935
LweI	GCATC	4 cut(s)	283, 382, 478, 669
MaeI	CTAG	2 cut(s)	132, 186
MaeII	ACGT	1 cut(s)	672
MaeIII	GTNAC	2 cut(s)	403, 811
MalI	GATC	6 cut(s)	249, 312, 498, 564, 971, 978
MboI	GATC	6 cut(s)	247, 310, 496, 562, 969, 976
MboII	GAAGA	2 cut(s)	676, 710
MflI	RGATCY	2 cut(s)	496, 562
MhlI	GDGCHC	2 cut(s)	16, 459
MluCI	AATT	6 cut(s)	70, 121, 408, 753, 915, 981
MmeI	TCCRAC	1 cut(s)	325
MnlI	CCTC	9 cut(s)	175, 271, 341, 487, 602, 688, 855, 862, 870
MroNI	GCCGGC	2 cut(s)	304, 783
MroXI	GAANNNNTTC	1 cut(s)	121
MseI	TTAA	2 cut(s)	741, 830
MslI	CAYNNNNRTG	2 cut(s)	390, 962
MspCI	CTTAAG	1 cut(s)	829
MspI	CCGG	5 cut(s)	63, 305, 560, 784, 910
MspR9I	CCNGG	2 cut(s)	64, 264
MvaI	CCWGG	1 cut(s)	264
MwoI	GCNNNNNNNGC	1 cut(s)	789
NaeI	GCCGGC	2 cut(s)	306, 785
NciI	CCSGG	1 cut(s)	64
NdeII	GATC	6 cut(s)	247, 310, 496, 562, 969, 976
NgoMIV	GCCGGC	2 cut(s)	304, 783
NlaIII	CATG	4 cut(s)	254, 389, 791, 967
NlaIV	GGNNCC	8 cut(s)	61, 144, 145, 456, 564, 716, 770, 954
NmeAIII	GCCGAG	1 cut(s)	517
NmuCI	GTSAC	1 cut(s)	811
NspI	RCATGY	2 cut(s)	389, 967
PaeR7I	CTCGAG	1 cut(s)	848
PasI	CCCWGGG	1 cut(s)	263
PceI	AGGCCT	1 cut(s)	172
PciI	ACATGT	1 cut(s)	963
PciSI	GCTCTTC	1 cut(s)	689
PdiI	GCCGGC	2 cut(s)	306, 785
PdmI	GAANNNNTTC	1 cut(s)	121
PfeI	GAWTC	2 cut(s)	576, 839
PflMI	CCANNNNNTGG	1 cut(s)	572
PpuMI	RGGWCCY	1 cut(s)	143
PscI	ACATGT	1 cut(s)	963
Psp5II	RGGWCCY	1 cut(s)	143
Psp6I	CCWGG	1 cut(s)	262
PspGI	CCWGG	1 cut(s)	262
PspN4I	GGNNCC	8 cut(s)	61, 144, 145, 456, 564, 716, 770, 954
PspPI	GGNCC	4 cut(s)	143, 629, 758, 857
PspPPI	RGGWCCY	1 cut(s)	143
PstI	CTGCAG	1 cut(s)	934
PsuI	RGATCY	2 cut(s)	496, 562
RsaI	GTAC	4 cut(s)	554, 597, 638, 770
RsaNI	GTAC	4 cut(s)	553, 596, 637, 769
RseI	CAYNNNNRTG	2 cut(s)	390, 962
SapI	GCTCTTC	1 cut(s)	689
SaqAI	TTAA	2 cut(s)	741, 830
Sau3AI	GATC	6 cut(s)	247, 310, 496, 562, 969, 976
Sau96I	GGNCC	4 cut(s)	143, 629, 758, 857
ScaI	AGTACT	1 cut(s)	554
ScrFI	CCNGG	2 cut(s)	64, 264
SduI	GDGCHC	2 cut(s)	16, 459
SfaNI	GCATC	4 cut(s)	283, 382, 478, 669
SfcI	CTRYAG	3 cut(s)	223, 237, 930
Sfr274I	CTCGAG	1 cut(s)	848
SinI	GGWCC	3 cut(s)	143, 758, 857
SlaI	CTCGAG	1 cut(s)	848
SmiMI	CAYNNNNRTG	2 cut(s)	390, 962
SmlI	CTYRAG	4 cut(s)	166, 299, 829, 848
SmoI	CTYRAG	4 cut(s)	166, 299, 829, 848
Sse9I	AATT	6 cut(s)	70, 121, 408, 753, 915, 981
SseBI	AGGCCT	1 cut(s)	172
SsiI	CCGC	1 cut(s)	425
SspMI	CTAG	2 cut(s)	132, 186
StuI	AGGCCT	1 cut(s)	172
StyD4I	CCNGG	2 cut(s)	62, 262
StyI	CCWWGG	3 cut(s)	126, 185, 438
TaaI	ACNGT	2 cut(s)	334, 773
TaiI	ACGT	1 cut(s)	675
TaqI	TCGA	1 cut(s)	849
TasI	AATT	6 cut(s)	70, 121, 408, 753, 915, 981
TatI	WGTACW	1 cut(s)	552
TfiI	GAWTC	2 cut(s)	576, 839
Tru1I	TTAA	2 cut(s)	741, 830
Tru9I	TTAA	2 cut(s)	741, 830
TscAI	CASTG	3 cut(s)	160, 339, 375
TseFI	GTSAC	1 cut(s)	811
Tsp45I	GTSAC	1 cut(s)	811
TspDTI	ATGAA	2 cut(s)	38, 181
TspRI	CASTG	3 cut(s)	160, 339, 375
Van91I	CCANNNNNTGG	1 cut(s)	572
Vha464I	CTTAAG	1 cut(s)	829
VpaK11BI	GGWCC	3 cut(s)	143, 758, 857
XapI	RAATTY	2 cut(s)	70, 121
XceI	RCATGY	2 cut(s)	389, 967
XhoI	CTCGAG	1 cut(s)	848
XmaJI	CCTAGG	1 cut(s)	185
XmnI	GAANNNNTTC	1 cut(s)	121
XspI	CTAG	2 cut(s)	132, 186
ZrmI	AGTACT	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.