Rmu_sc0001044.1_g000034

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001044.1
OG0001643
Physical Location & Seq
Forward (+)
118511 .. 120886
2376 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 792 bp
atgaagacaccaacctcttggatatgggtgttcaagaagaagaacagcttctctgatgggggaaaaagcggaggattaaagatgaagcaggtgtcgtttatgggagttgtgtgtacagtaatgttattcatcgtgtatagaaccaccaattaccaatatcaggcttataaggagacagagatggaagaaagaatgcatccctttaatcaggaaaattcttttgagttccagaaagttgcacggtttgccttgtggcatagtacaactaggtcggatagaattacagttcgtgctaaaaaaaagaagttccatagaagagtttatgatagtagaggcagtgtgaagtgtacggaggaaagtcgaggaccaccatgcactggctttgtggaaggtatggctccggtcttttcaagatctgcctggcattgcacttggcatcttatacagaatgatcttgtacatggatggggtctggacatgaagcttgggtattgtgcacagggggaccgtacaaagaatgttggagttgttgatagtgaatttatttttcataagggtatacaaagtttgggagggggtgactcacccgaaaaaaaggtttccaattctaagaagaaacgtattgtttcaaatcacgatggaagaaccgagattcggaggcaatcaacgcgggagtttacaatgttcaaagaacggtggaatcgtgctgtagaagaggacaagaagtggattgatccattcagaactgaccaaagacggaggaagaaacagcggttacgcaacaaccattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

263

Amino Acids

30.96

Weight (kDa)

10.08

Isoelectric Point (pI)

57.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 91 - 238 1.1e-55 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 168
AarI CACCTGC 1 cut(s) 79
Acc36I ACCTGC 1 cut(s) 79
AccB7I CCANNNNNTGG 1 cut(s) 377
AccI GTMKAC 1 cut(s) 559
AccII CGCG 1 cut(s) 670
AciI CCGC 3 cut(s) 69, 670, 772
AclWI GGATC 1 cut(s) 728
AcsI RAATTY 2 cut(s) 214, 539
AfaI GTAC 5 cut(s) 115, 262, 349, 459, 511
AfiI CCNNNNNNNGG 3 cut(s) 160, 377, 654
AgsI TTSAA 4 cut(s) 34, 411, 630, 688
AjnI CCWGG 1 cut(s) 419
AluBI AGCT 2 cut(s) 48, 484
AluI AGCT 2 cut(s) 48, 484
Alw21I GWGCWC 1 cut(s) 499
Alw26I GTCTC 1 cut(s) 167
Alw44I GTGCAC 1 cut(s) 495
AlwI GGATC 1 cut(s) 728
ApaLI GTGCAC 1 cut(s) 495
ApoI RAATTY 2 cut(s) 214, 539
Asp700I GAANNNNTTC 1 cut(s) 47
AspS9I GGNCC 2 cut(s) 365, 505
AsuHPI GGTGA 2 cut(s) 576, 590
AvaII GGWCC 2 cut(s) 365, 505
BaeGI GKGCMC 1 cut(s) 499
BbsI GAAGAC 1 cut(s) 11
Bbv12I GWGCWC 1 cut(s) 499
BccI CCATC 4 cut(s) 50, 175, 459, 632
BciT130I CCWGG 1 cut(s) 421
BcoDI GTCTC 1 cut(s) 167
BfaI CTAG 1 cut(s) 267
BfmI CTRYAG 1 cut(s) 708
BfuAI ACCTGC 1 cut(s) 79
BglII AGATCT 1 cut(s) 413
Bme1390I CCNGG 1 cut(s) 421
Bme18I GGWCC 2 cut(s) 365, 505
BmgT120I GGNCC 2 cut(s) 365, 505
BmiI GGNNCC 2 cut(s) 399, 506
BmrFI CCNGG 1 cut(s) 421
BmsI GCATC 2 cut(s) 205, 445
BpiI GAAGAC 1 cut(s) 11
BsaWI WCCGGW 1 cut(s) 400
Bsc4I CCNNNNNNNGG 3 cut(s) 160, 377, 654
Bse1I ACTGG 1 cut(s) 382
Bse3DI GCAATG 1 cut(s) 424
BseBI CCWGG 1 cut(s) 421
BseGI GGATG 2 cut(s) 196, 470
BseLI CCNNNNNNNGG 3 cut(s) 160, 377, 654
BseMI GCAATG 1 cut(s) 424
BseNI ACTGG 1 cut(s) 382
BseSI GKGCMC 1 cut(s) 499
Bsh1236I CGCG 1 cut(s) 670
BsiHKAI GWGCWC 1 cut(s) 499
BsiSI CCGG 1 cut(s) 401
BslFI GGGAC 1 cut(s) 518
BslI CCNNNNNNNGG 3 cut(s) 160, 377, 654
BsmAI GTCTC 1 cut(s) 167
BsmFI GGGAC 1 cut(s) 518
BsmI GAATGC 1 cut(s) 198
Bsp1286I GDGCHC 1 cut(s) 499
Bsp1407I TGTACA 2 cut(s) 113, 457
Bsp143I GATC 3 cut(s) 413, 451, 733
BspACI CCGC 3 cut(s) 69, 670, 772
BspFNI CGCG 1 cut(s) 670
BspLI GGNNCC 2 cut(s) 399, 506
BspMI ACCTGC 1 cut(s) 79
BspPI GGATC 1 cut(s) 728
BsrDI GCAATG 1 cut(s) 424
BsrGI TGTACA 2 cut(s) 113, 457
BsrI ACTGG 1 cut(s) 382
BssMI GATC 3 cut(s) 413, 451, 733
BssNAI GTATAC 1 cut(s) 560
Bst1107I GTATAC 1 cut(s) 560
Bst2UI CCWGG 1 cut(s) 421
Bst4CI ACNGT 5 cut(s) 118, 243, 286, 509, 696
Bst6I CTCTTC 2 cut(s) 310, 708
BstAPI GCANNNNNTGC 1 cut(s) 245
BstAUI TGTACA 2 cut(s) 113, 457
BstDEI CTNAG 1 cut(s) 609
BstF5I GGATG 2 cut(s) 196, 470
BstFNI CGCG 1 cut(s) 670
BstKTI GATC 3 cut(s) 416, 454, 736
BstMAI GTCTC 1 cut(s) 167
BstMBI GATC 3 cut(s) 413, 451, 733
BstMWI GCNNNNNNNGC 2 cut(s) 245, 667
BstNI CCWGG 1 cut(s) 421
BstSCI CCNGG 1 cut(s) 419
BstSFI CTRYAG 1 cut(s) 708
BstSLI GKGCMC 1 cut(s) 499
BstUI CGCG 1 cut(s) 670
BstV2I GAAGAC 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 413
BstXI CCANNNNNNTGG 1 cut(s) 18
BstYI RGATCY 1 cut(s) 413
BstZ17I GTATAC 1 cut(s) 560
BtsCI GGATG 2 cut(s) 196, 470
BtsI GCAGTG 1 cut(s) 343
BtsIMutI CAGTG 2 cut(s) 343, 375
BveI ACCTGC 1 cut(s) 79
Cfr13I GGNCC 2 cut(s) 365, 505
Csp6I GTAC 5 cut(s) 114, 261, 348, 458, 510
CviAII CATG 3 cut(s) 372, 461, 478
CviJI RGCY 5 cut(s) 48, 164, 381, 398, 484
CviKI_1 RGCY 5 cut(s) 48, 164, 381, 398, 484
CviQI GTAC 5 cut(s) 114, 261, 348, 458, 510
DdeI CTNAG 1 cut(s) 609
DpnI GATC 3 cut(s) 415, 453, 735
DpnII GATC 3 cut(s) 413, 451, 733
Eam1104I CTCTTC 2 cut(s) 310, 708
EarI CTCTTC 2 cut(s) 310, 708
Eco47I GGWCC 2 cut(s) 365, 505
EcoRII CCWGG 1 cut(s) 419
EcoT22I ATGCAT 1 cut(s) 198
FaeI CATG 3 cut(s) 375, 464, 481
FalI AAGNNNNNCTT 2 cut(s) 32, 64
FaqI GGGAC 1 cut(s) 518
FatI CATG 3 cut(s) 371, 460, 477
FauI CCCGC 1 cut(s) 663
FblI GTMKAC 1 cut(s) 559
FokI GGATG 2 cut(s) 183, 477
FspBI CTAG 1 cut(s) 267
HapII CCGG 1 cut(s) 401
Hin1II CATG 3 cut(s) 375, 464, 481
HindIII AAGCTT 1 cut(s) 482
HinfI GANTC 3 cut(s) 581, 652, 700
HpaII CCGG 1 cut(s) 401
HphI GGTGA 2 cut(s) 576, 590
Hpy166II GTNNAC 5 cut(s) 114, 348, 497, 560, 678
Hpy188I TCNGA 4 cut(s) 55, 274, 657, 743
Hpy188III TCNNGA 6 cut(s) 34, 209, 229, 411, 473, 635
Hpy8I GTNNAC 5 cut(s) 114, 348, 497, 560, 678
HpyAV CCTTC 1 cut(s) 383
HpyCH4III ACNGT 5 cut(s) 118, 243, 286, 509, 696
HpyCH4IV ACGT 1 cut(s) 619
HpyCH4V TGCA 5 cut(s) 196, 239, 375, 429, 497
HpyF10VI GCNNNNNNNGC 2 cut(s) 245, 667
HpyF3I CTNAG 1 cut(s) 609
HpySE526I ACGT 1 cut(s) 619
Hsp92II CATG 3 cut(s) 375, 464, 481
Kzo9I GATC 3 cut(s) 413, 451, 733
LmnI GCTCC 1 cut(s) 403
LweI GCATC 2 cut(s) 205, 445
MaeI CTAG 1 cut(s) 267
MaeII ACGT 1 cut(s) 619
MaeIII GTNAC 2 cut(s) 578, 774
MalI GATC 3 cut(s) 415, 453, 735
MboI GATC 3 cut(s) 413, 451, 733
MboII GAAGA 9 cut(s) 16, 49, 52, 197, 327, 625, 654, 725, 775
MflI RGATCY 1 cut(s) 413
MhlI GDGCHC 1 cut(s) 499
MluCI AATT 5 cut(s) 148, 214, 279, 539, 604
MlyI GAGTC 1 cut(s) 575
MmeI TCCRAC 2 cut(s) 252, 502
MnlI CCTC 9 cut(s) 25, 65, 326, 346, 356, 566, 651, 709, 753
Mph1103I ATGCAT 1 cut(s) 198
MroXI GAANNNNTTC 1 cut(s) 47
MseI TTAA 2 cut(s) 77, 204
MspA1I CMGCKG 1 cut(s) 772
MspI CCGG 1 cut(s) 401
MspR9I CCNGG 1 cut(s) 421
Mva1269I GAATGC 1 cut(s) 198
MvaI CCWGG 1 cut(s) 421
MvnI CGCG 1 cut(s) 670
MwoI GCNNNNNNNGC 2 cut(s) 245, 667
NdeII GATC 3 cut(s) 413, 451, 733
NlaIII CATG 3 cut(s) 375, 464, 481
NlaIV GGNNCC 2 cut(s) 399, 506
NmuCI GTSAC 1 cut(s) 578
NsiI ATGCAT 1 cut(s) 198
PaqCI CACCTGC 1 cut(s) 79
PcsI WCGNNNNNNNCGW 1 cut(s) 700
PctI GAATGC 1 cut(s) 198
PdmI GAANNNNTTC 1 cut(s) 47
PfeI GAWTC 2 cut(s) 652, 700
PflMI CCANNNNNTGG 1 cut(s) 377
PleI GAGTC 1 cut(s) 575
PpsI GAGTC 1 cut(s) 575
PsiI TTATAA 1 cut(s) 168
Psp6I CCWGG 1 cut(s) 419
PspGI CCWGG 1 cut(s) 419
PspN4I GGNNCC 2 cut(s) 399, 506
PspPI GGNCC 2 cut(s) 365, 505
PsuI RGATCY 1 cut(s) 413
RsaI GTAC 5 cut(s) 115, 262, 349, 459, 511
RsaNI GTAC 5 cut(s) 114, 261, 348, 458, 510
SaqAI TTAA 2 cut(s) 77, 204
Sau3AI GATC 3 cut(s) 413, 451, 733
Sau96I GGNCC 2 cut(s) 365, 505
SchI GAGTC 1 cut(s) 575
ScrFI CCNGG 1 cut(s) 421
SduI GDGCHC 1 cut(s) 499
SetI ASST 8 cut(s) 17, 50, 93, 272, 394, 486, 600, 622
SfaNI GCATC 2 cut(s) 205, 445
SfcI CTRYAG 1 cut(s) 708
SinI GGWCC 2 cut(s) 365, 505
Sse9I AATT 5 cut(s) 148, 214, 279, 539, 604
SsiI CCGC 3 cut(s) 69, 670, 772
SspMI CTAG 1 cut(s) 267
StyD4I CCNGG 1 cut(s) 419
TaaI ACNGT 5 cut(s) 118, 243, 286, 509, 696
TaiI ACGT 1 cut(s) 622
TaqI TCGA 1 cut(s) 361
TasI AATT 5 cut(s) 148, 214, 279, 539, 604
TatI WGTACW 3 cut(s) 113, 260, 457
TfiI GAWTC 2 cut(s) 652, 700
Tru1I TTAA 2 cut(s) 77, 204
Tru9I TTAA 2 cut(s) 77, 204
TscAI CASTG 2 cut(s) 343, 382
TseFI GTSAC 1 cut(s) 578
Tsp45I GTSAC 1 cut(s) 578
TspDTI ATGAA 5 cut(s) 17, 98, 118, 494, 539
TspGWI ACGGA 2 cut(s) 365, 772
TspRI CASTG 2 cut(s) 343, 382
Van91I CCANNNNNTGG 1 cut(s) 377
VneI GTGCAC 1 cut(s) 495
VpaK11BI GGWCC 2 cut(s) 365, 505
XapI RAATTY 2 cut(s) 214, 539
XmiI GTMKAC 1 cut(s) 559
XmnI GAANNNNTTC 1 cut(s) 47
XspI CTAG 1 cut(s) 267
Zsp2I ATGCAT 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.