Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001304.1

Orthogroup ID

OG0004242

Physical Location & Seq

Genomic Coordinates Reverse (-)

2464 .. 3921

Gene Structure 1458 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001304.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1458 bp

atgcttgacattgatggttgtaaaaaattggctgcacttccgaggatggtggaacttagtacattgtacctgatcgattcaaatgctgaattacttggatccaagatggaatttagctcgctgacctctttgcacctaactgatattccagatgtgaagcatctacctgaaggctttatccaacagtctgcaaaacttgaaaaattgagtcttacaagctttcctgaccttgaatatttggcagatgaccgagttggactagcacaccttgtatcccttcaatgcttgacaatatcccattgtcctgagtttgttgctttgcctgatgagctcccacctgtacttaaatatttggatttgaaacattgtcctagcctgatgaagctgcctggtaaacttcacaagcttgagtgtcttgcagagctgcagattgaatggtgttcaaagattgaagcatttccagatgtggggttgcctgacaaactgaagcgtcttgtaatccgcgaatgtggtgctctgatgacccttcctcaggagcttctctgcaataacaattttctcgagtatttagaagttcataaatgtccttctcttgtgtcagttcttgaagaaggaaacttgccatcaactctaacacatatgaaattttactattgcaaaattctgggatcactgcctgagggtttgatgcacaaagacaatatgactctaaagtacttggagatagacaactgttcctctctcaagtcctttccaaatggtgagttaccaacaagccttgagcgtcttgagattagtgaatgctctaatttccagacattgccattgagccttctcaacctcacgaatcttgagaccttagaagtaaagagctgcccccttcttcaggattttccagagggtggattgccacccaacataaagtttgacacaatttcagaatgtaagaatctcaagtctctacctaaattctttcataaactcaaatgtcttcagaagttggagatttctggctgtcctagtctcctgtccttgccaaagcagggtctgcccagcagcttaaggctacttacagttactgattgtgaaaagcttaatcccatacatcagtggagacttcacaaactaccctctctagatgttttcaccattggtggatttcctggcctgaagtccttttcaaaagattatcctcttcctcacactttaacctctttaagcattcaaagattcccagatcttgaatccatatcggaggtgcttgagaatctcacctcacttgaaaacctgagtatcagggagtgtgataagctccaatctttgctagagactgggctaccagcgacaatttctaccttgacaattcggaattgtttacttctagaacctcgatgtgaaaaggacaaaggggaagattggtccaagatcaaaaacatcccctttgtgagttcacgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

485

Amino Acids

54.46

Weight (kDa)

5.63

Isoelectric Point (pI)

48.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004242)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01950 FvH4_7g01950 FvH4_7g01950 FvH4_7g01950 FvH4_7g01950
malus_domestica	MD07G1025200.v1.1
prunus_persica	Prupe.2G025700_v2.0.a1
pyrus_communis	pycom07g01950
rosa_chinensis	RchiOBHm_Chr1g0318941
rosa_multiflora	Rmu_sc0000504.1_g000032 Rmu_sc0001304.1_g000001 Rmu_sc0001304.1_g000002 Rmu_sc0001304.1_g000003 Rmu_sc0006228.1_g000001 Rmu_sc0009454.1_g000007
rosa_roxburghii	Rroxscaffold_4G00328760 Rroxscaffold_4G00328790 Rroxscaffold_4G00328810
rosa_rugosa	Rorug01G0025200 Rorug01G0025500 Rorug01G0025600
rosa_samantha	Rh1AG037200 Rh1AG037300 Rh1AG037400 Rh1BG033400 Rh1BG033800 Rh1CG036600 Rh1DG033700 Rh1DG034000
rosa_wichuraiana	Rw0G005440 Rw0G015080 Rw1G002890 Rw1G002900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	902
AccII	CGCG	1 cut(s)	504
AciI	CCGC	1 cut(s)	502
AclWI	GGATC	3 cut(s)	93, 106, 676
AcsI	RAATTY	4 cut(s)	110, 644, 660, 968
AcuI	CTGAAG	5 cut(s)	189, 506, 869, 977, 1190
AfaI	GTAC	4 cut(s)	61, 68, 342, 716
AfiI	CCNNNNNNNGG	5 cut(s)	467, 532, 886, 902, 1043
AflII	CTTAAG	1 cut(s)	1060
AjnI	CCWGG	2 cut(s)	388, 1162
Alw21I	GWGCWC	2 cut(s)	333, 517
Alw26I	GTCTC	5 cut(s)	848, 963, 1028, 1108, 1322
AlwI	GGATC	3 cut(s)	93, 106, 676
AlwNI	CAGNNNCTG	2 cut(s)	1048, 1079
Ama87I	CYCGRG	1 cut(s)	560
AoxI	GGCC	1 cut(s)	1165
ApeKI	GCWGC	5 cut(s)	32, 385, 424, 873, 1056
ApoI	RAATTY	4 cut(s)	110, 644, 660, 968
Asp700I	GAANNNNTTC	1 cut(s)	456
AspS9I	GGNCC	1 cut(s)	1419
AsuHPI	GGTGA	3 cut(s)	773, 1138, 1264
AvaI	CYCGRG	1 cut(s)	560
AvaII	GGWCC	1 cut(s)	1419
AxyI	CCTNAGG	2 cut(s)	531, 678
BaeI	ACNNNNGTAYC	2 cut(s)	1276, 1309
BamHI	GGATCC	1 cut(s)	98
BanII	GRGCYC	1 cut(s)	333
BbsI	GAAGAC	1 cut(s)	983
Bbv12I	GWGCWC	2 cut(s)	333, 517
BbvI	GCAGC	5 cut(s)	19, 372, 411, 860, 1068
BccI	CCATC	4 cut(s)	8, 40, 100, 631
BcgI	CGANNNNNNTGC	4 cut(s)	65, 99, 494, 528
BciT130I	CCWGG	2 cut(s)	390, 1164
BciVI	GTATCC	1 cut(s)	283
BcoDI	GTCTC	5 cut(s)	848, 963, 1028, 1108, 1322
BfaI	CTAG	6 cut(s)	260, 372, 1020, 1136, 1325, 1382
BfmI	CTRYAG	1 cut(s)	425
BfrI	CTTAAG	1 cut(s)	1060
BfuI	GTATCC	1 cut(s)	283
BglII	AGATCT	1 cut(s)	1237
BisI	GCNGC	5 cut(s)	33, 386, 425, 874, 1057
BlsI	GCNGC	5 cut(s)	34, 387, 426, 875, 1058
BmcAI	AGTACT	1 cut(s)	716
Bme1390I	CCNGG	2 cut(s)	390, 1164
Bme18I	GGWCC	1 cut(s)	1419
BmeT110I	CYCGRG	1 cut(s)	560
BmgT120I	GGNCC	1 cut(s)	1419
BmiI	GGNNCC	1 cut(s)	100
BmrFI	CCNGG	2 cut(s)	390, 1164
BmrI	ACTGGG	1 cut(s)	1341
BmsI	GCATC	2 cut(s)	169, 678
BmuI	ACTGGG	1 cut(s)	1341
BpiI	GAAGAC	1 cut(s)	983
BpuEI	CTTGAG	7 cut(s)	428, 728, 800, 809, 872, 938, 1283
Bsa29I	ATCGAT	1 cut(s)	75
BsaI	GGTCTC	1 cut(s)	848
BsaJI	CCNNGG	1 cut(s)	41
Bsc4I	CCNNNNNNNGG	5 cut(s)	467, 532, 886, 902, 1043
Bse1I	ACTGG	1 cut(s)	1336
Bse21I	CCTNAGG	2 cut(s)	531, 678
Bse3DI	GCAATG	1 cut(s)	818
BseBI	CCWGG	2 cut(s)	390, 1164
BseCI	ATCGAT	1 cut(s)	75
BseDI	CCNNGG	1 cut(s)	41
BseGI	GGATG	2 cut(s)	51, 1434
BseLI	CCNNNNNNNGG	5 cut(s)	467, 532, 886, 902, 1043
BseMI	GCAATG	1 cut(s)	818
BseMII	CTCAG	4 cut(s)	297, 545, 669, 1280
BseNI	ACTGG	1 cut(s)	1336
BseXI	GCAGC	5 cut(s)	19, 372, 411, 860, 1068
BseYI	CCCAGC	1 cut(s)	1052
BsgI	GTGCAG	1 cut(s)	18
Bsh1236I	CGCG	1 cut(s)	504
BshFI	GGCC	1 cut(s)	1167
BshVI	ATCGAT	1 cut(s)	75
BsiHKAI	GWGCWC	2 cut(s)	333, 517
BsiHKCI	CYCGRG	1 cut(s)	560
BslI	CCNNNNNNNGG	5 cut(s)	467, 532, 886, 902, 1043
BsmAI	GTCTC	5 cut(s)	848, 963, 1028, 1108, 1322
BsmI	GAATGC	2 cut(s)	806, 1221
BsnI	GGCC	1 cut(s)	1167
Bso31I	GGTCTC	1 cut(s)	848
BsoBI	CYCGRG	1 cut(s)	560
Bsp1286I	GDGCHC	2 cut(s)	333, 517
Bsp143I	GATC	5 cut(s)	72, 98, 668, 1237, 1425
BspACI	CCGC	1 cut(s)	502
BspANI	GGCC	1 cut(s)	1167
BspCNI	CTCAG	4 cut(s)	298, 544, 670, 1281
BspDI	ATCGAT	1 cut(s)	75
BspFNI	CGCG	1 cut(s)	504
BspLI	GGNNCC	1 cut(s)	100
BspMAI	CTGCAG	1 cut(s)	429
BspPI	GGATC	3 cut(s)	93, 106, 676
BspTI	CTTAAG	1 cut(s)	1060
BspTNI	GGTCTC	1 cut(s)	848
BsrDI	GCAATG	1 cut(s)	818
BsrI	ACTGG	1 cut(s)	1336
BssECI	CCNNGG	1 cut(s)	41
BssMI	GATC	5 cut(s)	72, 98, 668, 1237, 1425
Bst2UI	CCWGG	2 cut(s)	390, 1164
Bst4CI	ACNGT	3 cut(s)	186, 734, 1075
Bst6I	CTCTTC	1 cut(s)	1200
BstAFI	CTTAAG	1 cut(s)	1060
BstAPI	GCANNNNNTGC	1 cut(s)	1048
BstC8I	GCNNGC	1 cut(s)	119
BstDEI	CTNAG	6 cut(s)	56, 306, 531, 678, 859, 1289
BstENI	CCTNNNNNAGG	2 cut(s)	530, 884
BstF5I	GGATG	2 cut(s)	51, 1434
BstFNI	CGCG	1 cut(s)	504
BstKTI	GATC	5 cut(s)	75, 101, 671, 1240, 1428
BstMAI	GTCTC	5 cut(s)	848, 963, 1028, 1108, 1322
BstMBI	GATC	5 cut(s)	72, 98, 668, 1237, 1425
BstMWI	GCNNNNNNNGC	2 cut(s)	328, 1048
BstNI	CCWGG	2 cut(s)	390, 1164
BstSCI	CCNGG	2 cut(s)	388, 1162
BstSFI	CTRYAG	1 cut(s)	425
BstUI	CGCG	1 cut(s)	504
BstV1I	GCAGC	5 cut(s)	19, 372, 411, 860, 1068
BstV2I	GAAGAC	1 cut(s)	983
BstX2I	RGATCY	2 cut(s)	98, 1237
BstYI	RGATCY	2 cut(s)	98, 1237
Bsu15I	ATCGAT	1 cut(s)	75
Bsu36I	CCTNAGG	2 cut(s)	531, 678
BsuI	GTATCC	1 cut(s)	283
BsuRI	GGCC	1 cut(s)	1167
BsuTUI	ATCGAT	1 cut(s)	75
BtsCI	GGATG	2 cut(s)	51, 1434
BtsI	GCAGTG	1 cut(s)	671
BtsIMutI	CAGTG	2 cut(s)	671, 1115
Cac8I	GCNNGC	1 cut(s)	119
CaiI	CAGNNNCTG	2 cut(s)	1048, 1079
Cfr13I	GGNCC	1 cut(s)	1419
ClaI	ATCGAT	1 cut(s)	75
CseI	GACGC	2 cut(s)	479, 773
Csp6I	GTAC	4 cut(s)	60, 67, 341, 715
CviQI	GTAC	4 cut(s)	60, 67, 341, 715
DdeI	CTNAG	6 cut(s)	56, 306, 531, 678, 859, 1289
DpnI	GATC	5 cut(s)	74, 100, 670, 1239, 1427
DpnII	GATC	5 cut(s)	72, 98, 668, 1237, 1425
Eam1104I	CTCTTC	1 cut(s)	1200
EarI	CTCTTC	1 cut(s)	1200
Ecl136II	GAGCTC	1 cut(s)	331
Eco24I	GRGCYC	1 cut(s)	333
Eco31I	GGTCTC	1 cut(s)	848
Eco47I	GGWCC	1 cut(s)	1419
Eco53kI	GAGCTC	1 cut(s)	331
Eco57I	CTGAAG	5 cut(s)	189, 506, 869, 977, 1190
Eco81I	CCTNAGG	2 cut(s)	531, 678
Eco88I	CYCGRG	1 cut(s)	560
EcoICRI	GAGCTC	1 cut(s)	331
EcoNI	CCTNNNNNAGG	2 cut(s)	530, 884
EcoRII	CCWGG	2 cut(s)	388, 1162
EcoT38I	GRGCYC	1 cut(s)	333
FaiI	YATR	8 cut(s)	579, 639, 641, 704, 920, 978, 1103, 1250
FauNDI	CATATG	1 cut(s)	639
Fnu4HI	GCNGC	5 cut(s)	33, 386, 425, 874, 1057
FokI	GGATG	2 cut(s)	58, 1421
FriOI	GRGCYC	1 cut(s)	333
Fsp4HI	GCNGC	5 cut(s)	33, 386, 425, 874, 1057
FspBI	CTAG	6 cut(s)	260, 372, 1020, 1136, 1325, 1382
GluI	GCNGC	5 cut(s)	33, 386, 425, 874, 1057
GsaI	CCCAGC	1 cut(s)	1056
HaeIII	GGCC	1 cut(s)	1167
HgaI	GACGC	2 cut(s)	479, 773
HindIII	AAGCTT	3 cut(s)	217, 404, 1091
HinfI	GANTC	8 cut(s)	77, 208, 706, 847, 949, 1230, 1244, 1267
HphI	GGTGA	3 cut(s)	773, 1138, 1264
Hpy166II	GTNNAC	3 cut(s)	395, 1376, 1451
Hpy188I	TCNGA	6 cut(s)	42, 519, 940, 996, 1255, 1368
Hpy8I	GTNNAC	3 cut(s)	395, 1376, 1451
HpyAV	CCTTC	7 cut(s)	164, 287, 536, 597, 605, 842, 890
HpyCH4III	ACNGT	3 cut(s)	186, 734, 1075
HpyCH4V	TGCA	8 cut(s)	35, 133, 191, 419, 427, 546, 657, 691
HpyF10VI	GCNNNNNNNGC	2 cut(s)	328, 1048
HpyF3I	CTNAG	6 cut(s)	56, 306, 531, 678, 859, 1289
Kzo9I	GATC	5 cut(s)	72, 98, 668, 1237, 1425
LmnI	GCTCC	3 cut(s)	336, 535, 1317
Lsp1109I	GCAGC	5 cut(s)	19, 372, 411, 860, 1068
LweI	GCATC	2 cut(s)	169, 678
MaeI	CTAG	6 cut(s)	260, 372, 1020, 1136, 1325, 1382
MaeIII	GTNAC	2 cut(s)	765, 1075
MalI	GATC	5 cut(s)	74, 100, 670, 1239, 1427
MboI	GATC	5 cut(s)	72, 98, 668, 1237, 1425
MboII	GAAGA	5 cut(s)	620, 875, 983, 1187, 1424
MflI	RGATCY	2 cut(s)	98, 1237
MhlI	GDGCHC	2 cut(s)	333, 517
MlyI	GAGTC	2 cut(s)	217, 700
MmeI	TCCRAC	3 cut(s)	205, 235, 981
MroXI	GAANNNNTTC	1 cut(s)	456
MseI	TTAA	5 cut(s)	345, 1061, 1095, 1208, 1217
MspCI	CTTAAG	1 cut(s)	1060
MspR9I	CCNGG	2 cut(s)	390, 1164
Mva1269I	GAATGC	2 cut(s)	806, 1221
MvaI	CCWGG	2 cut(s)	390, 1164
MvnI	CGCG	1 cut(s)	504
MwoI	GCNNNNNNNGC	2 cut(s)	328, 1048
NdeI	CATATG	1 cut(s)	639
NdeII	GATC	5 cut(s)	72, 98, 668, 1237, 1425
NlaIV	GGNNCC	1 cut(s)	100
PaeR7I	CTCGAG	1 cut(s)	560
PctI	GAATGC	2 cut(s)	806, 1221
PdmI	GAANNNNTTC	1 cut(s)	456
PfeI	GAWTC	6 cut(s)	77, 847, 949, 1230, 1244, 1267
PflMI	CCANNNNNTGG	1 cut(s)	902
PkrI	GCNGC	5 cut(s)	34, 387, 426, 875, 1058
PleI	GAGTC	2 cut(s)	216, 700
PpsI	GAGTC	2 cut(s)	216, 700
Psp124BI	GAGCTC	1 cut(s)	333
Psp6I	CCWGG	2 cut(s)	388, 1162
PspFI	CCCAGC	1 cut(s)	1052
PspGI	CCWGG	2 cut(s)	388, 1162
PspN4I	GGNNCC	1 cut(s)	100
PspPI	GGNCC	1 cut(s)	1419
PstI	CTGCAG	1 cut(s)	429
PstNI	CAGNNNCTG	2 cut(s)	1048, 1079
PsuI	RGATCY	2 cut(s)	98, 1237
RsaI	GTAC	4 cut(s)	61, 68, 342, 716
RsaNI	GTAC	4 cut(s)	60, 67, 341, 715
SacI	GAGCTC	1 cut(s)	333
SaqAI	TTAA	5 cut(s)	345, 1061, 1095, 1208, 1217
SatI	GCNGC	5 cut(s)	33, 386, 425, 874, 1057
Sau3AI	GATC	5 cut(s)	72, 98, 668, 1237, 1425
Sau96I	GGNCC	1 cut(s)	1419
ScaI	AGTACT	1 cut(s)	716
SchI	GAGTC	2 cut(s)	217, 700
ScrFI	CCNGG	2 cut(s)	390, 1164
SduI	GDGCHC	2 cut(s)	333, 517
SfaNI	GCATC	2 cut(s)	169, 678
SfcI	CTRYAG	1 cut(s)	425
Sfr274I	CTCGAG	1 cut(s)	560
SinI	GGWCC	1 cut(s)	1419
SlaI	CTCGAG	1 cut(s)	560
SmlI	CTYRAG	9 cut(s)	407, 560, 743, 779, 788, 851, 953, 1060, 1262
SmoI	CTYRAG	9 cut(s)	407, 560, 743, 779, 788, 851, 953, 1060, 1262
SsiI	CCGC	1 cut(s)	502
SspI	AATATT	2 cut(s)	236, 350
SspMI	CTAG	6 cut(s)	260, 372, 1020, 1136, 1325, 1382
SstI	GAGCTC	1 cut(s)	333
StyD4I	CCNGG	2 cut(s)	388, 1162
TaaI	ACNGT	3 cut(s)	186, 734, 1075
TaqI	TCGA	3 cut(s)	75, 561, 1390
TaqII	GACCGA	1 cut(s)	264
TatI	WGTACW	3 cut(s)	59, 340, 714
TfiI	GAWTC	6 cut(s)	77, 847, 949, 1230, 1244, 1267
Tru1I	TTAA	5 cut(s)	345, 1061, 1095, 1208, 1217
Tru9I	TTAA	5 cut(s)	345, 1061, 1095, 1208, 1217
TscAI	CASTG	2 cut(s)	678, 1115
TseI	GCWGC	5 cut(s)	32, 385, 424, 873, 1056
TspDTI	ATGAA	4 cut(s)	395, 566, 656, 965
TspRI	CASTG	2 cut(s)	678, 1115
Van91I	CCANNNNNTGG	1 cut(s)	902
Vha464I	CTTAAG	1 cut(s)	1060
VpaK11BI	GGWCC	1 cut(s)	1419
XagI	CCTNNNNNAGG	2 cut(s)	530, 884
XapI	RAATTY	4 cut(s)	110, 644, 660, 968
XbaI	TCTAGA	2 cut(s)	1135, 1381
XhoI	CTCGAG	1 cut(s)	560
XmnI	GAANNNNTTC	1 cut(s)	456
XspI	CTAG	6 cut(s)	260, 372, 1020, 1136, 1325, 1382
ZrmI	AGTACT	1 cut(s)	716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.