Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001304.1

Orthogroup ID

OG0004242

Physical Location & Seq

Genomic Coordinates Reverse (-)

3992 .. 5395

Gene Structure 1404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001304.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

atggcagagggttttgtgccagagccagaaggaaatcaactgatcgaagatgtagctggaagatatgtttcagattttttatcaaggtccttcttccaacacaccagtgacaagtcacgactggtaatgcatgacctcatacatgatcttgcacaatctgtttctggcaaaacatttgttaggttggaggaaaattcagagaaccataaaaagtctacaaaggctcggcacttgtcatatacccgtggatctgaagatgtatttcagaaatttgaggcattcagtgaggtggattgtttacgaaccattctaccactagacccgttgcaaggattcaatgtgagtgacttatctgacaaggttccttgtgatatgatgccaaaattaagacttctgcgggtgctatcctttagtggttatctcatagaaaagttgccagattcaattggaaacttgaagcatctgcgatacctcaatctttcttattgtcaaatagaagagctacctgagccaacaagcagtctatacaatctgcagacattaattttattcagatgtcgatcgcttaccatgctgcctgcagacataggaaacctaaggaatttacggcatctcaatattcagggaactaggctgaaaagtatgcctttgggaatgggaagattggttaaccttcaaatactgtcagattttattgtggggaaagccatcggaaaaaggattgcagaattgaaggacttgtcacatcttccaggctcagtttctattttgtgtttgcatgatgtcagcagtgttagggatgcaattgaggccagattagatgttaagatgcaccttgatgatttagttttggaatggagcagcagtactgatggttcgcgaaatgaagagatcgagacagaggtacttgatgcactgcagcctcatgaaaacctgaagaaactcaccattaagtattatggaggtacagaatttccatattggatggggaatcctttgttcactaacatggcgtacttgcatctctatggttgcataaaatgcacatctttaccaccccttggccaactaccttctcttaaagatctcataattgaagcaatgcatggaatacagcttgtaggaatggatttttttggggatgatgatggttccacaattttttccccctctttagagactttgaaatttgaggacatgaaagaatgggagaaatggtcatctttagaagatgaaaagattaaaggatttcccagccttcgggagctttccatatttagatgtcctaagttaacaaagttgatttgcttctctagaaaagctgctcatcaagaactgcggagcaataactaccttctcacagaatcctgcacttgtgaatttggaacctgtagaattccctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

467

Amino Acids

53.08

Weight (kDa)

5.83

Isoelectric Point (pI)

53.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004242)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01950 FvH4_7g01950 FvH4_7g01950 FvH4_7g01950 FvH4_7g01950
malus_domestica	MD07G1025200.v1.1
prunus_persica	Prupe.2G025700_v2.0.a1
pyrus_communis	pycom07g01950
rosa_chinensis	RchiOBHm_Chr1g0318941
rosa_multiflora	Rmu_sc0000504.1_g000032 Rmu_sc0001304.1_g000001 Rmu_sc0001304.1_g000002 Rmu_sc0001304.1_g000003 Rmu_sc0006228.1_g000001 Rmu_sc0009454.1_g000007
rosa_roxburghii	Rroxscaffold_4G00328760 Rroxscaffold_4G00328790 Rroxscaffold_4G00328810
rosa_rugosa	Rorug01G0025200 Rorug01G0025500 Rorug01G0025600
rosa_samantha	Rh1AG037200 Rh1AG037300 Rh1AG037400 Rh1BG033400 Rh1BG033800 Rh1CG036600 Rh1DG033700 Rh1DG034000
rosa_wichuraiana	Rw0G005440 Rw0G015080 Rw1G002890 Rw1G002900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1061
AccI	GTMKAC	1 cut(s)	215
AccII	CGCG	1 cut(s)	880
AciI	CCGC	2 cut(s)	397, 1339
AclWI	GGATC	1 cut(s)	256
AcoI	YGGCCR	1 cut(s)	1063
AcsI	RAATTY	7 cut(s)	193, 269, 601, 971, 1187, 1379, 1395
AcuI	CTGAAG	2 cut(s)	273, 956
AfaI	GTAC	4 cut(s)	868, 906, 967, 1016
AfiI	CCNNNNNNNGG	3 cut(s)	329, 1061, 1260
AgsI	TTSAA	7 cut(s)	337, 444, 457, 677, 733, 1097, 1186
AjnI	CCWGG	1 cut(s)	751
AleI	CACNNNNGTG	1 cut(s)	105
AluBI	AGCT	5 cut(s)	56, 502, 1117, 1267, 1322
AluI	AGCT	5 cut(s)	56, 502, 1117, 1267, 1322
Alw26I	GTCTC	2 cut(s)	890, 1172
AlwI	GGATC	1 cut(s)	256
AoxI	GGCC	2 cut(s)	810, 1063
ApeKI	GCWGC	4 cut(s)	574, 861, 919, 1322
ApoI	RAATTY	7 cut(s)	193, 269, 601, 971, 1187, 1379, 1395
AseI	ATTAAT	1 cut(s)	542
AspS9I	GGNCC	1 cut(s)	87
AsuHPI	GGTGA	1 cut(s)	937
AvaII	GGWCC	1 cut(s)	87
AxyI	CCTNAGG	1 cut(s)	596
BalI	TGGCCA	1 cut(s)	1065
BbvI	GCAGC	4 cut(s)	561, 873, 931, 1309
BccI	CCATC	4 cut(s)	716, 866, 979, 1142
BceAI	ACGGC	1 cut(s)	623
BciT130I	CCWGG	1 cut(s)	753
BcoDI	GTCTC	2 cut(s)	890, 1172
BfaI	CTAG	3 cut(s)	317, 630, 1314
BfmI	CTRYAG	4 cut(s)	533, 579, 917, 1390
BglII	AGATCT	1 cut(s)	1084
BisI	GCNGC	4 cut(s)	575, 862, 920, 1323
BlsI	GCNGC	4 cut(s)	576, 863, 921, 1324
BmcAI	AGTACT	1 cut(s)	868
Bme1390I	CCNGG	1 cut(s)	753
Bme18I	GGWCC	1 cut(s)	87
BmgT120I	GGNCC	1 cut(s)	87
BmiI	GGNNCC	3 cut(s)	363, 1153, 1387
BmrFI	CCNGG	1 cut(s)	753
BmsI	GCATC	7 cut(s)	366, 469, 619, 790, 819, 901, 1030
Bpu10I	CCTNAGC	1 cut(s)	507
BsaBI	GATNNNNATC	1 cut(s)	559
BsaJI	CCNNGG	2 cut(s)	244, 1060
BsaXI	ACNNNNNCTCC	4 cut(s)	850, 880, 1202, 1232
Bsc4I	CCNNNNNNNGG	3 cut(s)	329, 1061, 1260
Bse1I	ACTGG	2 cut(s)	105, 126
Bse21I	CCTNAGG	1 cut(s)	596
Bse3DI	GCAATG	1 cut(s)	1107
Bse8I	GATNNNNATC	1 cut(s)	559
BseBI	CCWGG	1 cut(s)	753
BseDI	CCNNGG	2 cut(s)	244, 1060
BseGI	GGATG	3 cut(s)	805, 990, 1147
BseJI	GATNNNNATC	1 cut(s)	559
BseLI	CCNNNNNNNGG	3 cut(s)	329, 1061, 1260
BseMI	GCAATG	1 cut(s)	1107
BseMII	CTCAG	2 cut(s)	498, 771
BseNI	ACTGG	2 cut(s)	105, 126
BseXI	GCAGC	4 cut(s)	561, 873, 931, 1309
BseYI	CCCAGC	1 cut(s)	1253
BsgI	GTGCAG	1 cut(s)	1354
Bsh1236I	CGCG	1 cut(s)	880
Bsh1285I	CGRYCG	1 cut(s)	563
BshFI	GGCC	2 cut(s)	812, 1065
BsiEI	CGRYCG	1 cut(s)	563
BslI	CCNNNNNNNGG	3 cut(s)	329, 1061, 1260
BsmAI	GTCTC	2 cut(s)	890, 1172
BsmI	GAATGC	1 cut(s)	278
BsnI	GGCC	2 cut(s)	812, 1065
Bsp143I	GATC	6 cut(s)	42, 145, 248, 560, 891, 1084
Bsp68I	TCGCGA	1 cut(s)	880
BspACI	CCGC	2 cut(s)	397, 1339
BspANI	GGCC	2 cut(s)	812, 1065
BspCNI	CTCAG	2 cut(s)	499, 770
BspFNI	CGCG	1 cut(s)	880
BspHI	TCATGA	1 cut(s)	925
BspLI	GGNNCC	3 cut(s)	363, 1153, 1387
BspMAI	CTGCAG	3 cut(s)	537, 583, 921
BspPI	GGATC	1 cut(s)	256
BspQI	GCTCTTC	1 cut(s)	492
BsrDI	GCAATG	1 cut(s)	1107
BsrI	ACTGG	2 cut(s)	105, 126
BssECI	CCNNGG	2 cut(s)	244, 1060
BssMI	GATC	6 cut(s)	42, 145, 248, 560, 891, 1084
BssT1I	CCWWGG	1 cut(s)	1060
Bst2UI	CCWGG	1 cut(s)	753
Bst4CI	ACNGT	1 cut(s)	684
Bst6I	CTCTTC	2 cut(s)	492, 882
BstAPI	GCANNNNNTGC	1 cut(s)	1041
BstC8I	GCNNGC	1 cut(s)	579
BstDEI	CTNAG	4 cut(s)	507, 596, 757, 1287
BstDSI	CCRYGG	1 cut(s)	244
BstF5I	GGATG	3 cut(s)	805, 990, 1147
BstFNI	CGCG	1 cut(s)	880
BstKTI	GATC	6 cut(s)	45, 148, 251, 563, 894, 1087
BstMAI	GTCTC	2 cut(s)	890, 1172
BstMBI	GATC	6 cut(s)	42, 145, 248, 560, 891, 1084
BstMCI	CGRYCG	1 cut(s)	563
BstMWI	GCNNNNNNNGC	4 cut(s)	508, 571, 809, 1041
BstNI	CCWGG	1 cut(s)	753
BstSCI	CCNGG	1 cut(s)	751
BstSFI	CTRYAG	4 cut(s)	533, 579, 917, 1390
BstUI	CGCG	1 cut(s)	880
BstV1I	GCAGC	4 cut(s)	561, 873, 931, 1309
BstX2I	RGATCY	2 cut(s)	248, 1084
BstYI	RGATCY	2 cut(s)	248, 1084
Bsu36I	CCTNAGG	1 cut(s)	596
BsuRI	GGCC	2 cut(s)	812, 1065
BtgI	CCRYGG	1 cut(s)	244
BtsCI	GGATG	3 cut(s)	805, 990, 1147
BtsI	GCAGTG	2 cut(s)	796, 914
BtsIMutI	CAGTG	4 cut(s)	112, 289, 796, 914
BtuMI	TCGCGA	1 cut(s)	880
Cac8I	GCNNGC	1 cut(s)	579
CciI	TCATGA	1 cut(s)	925
Cfr13I	GGNCC	1 cut(s)	87
Csp6I	GTAC	4 cut(s)	867, 905, 966, 1015
CviAII	CATG	8 cut(s)	131, 143, 571, 779, 926, 1009, 1106, 1198
CviQI	GTAC	4 cut(s)	867, 905, 966, 1015
DdeI	CTNAG	4 cut(s)	507, 596, 757, 1287
DpnI	GATC	6 cut(s)	44, 147, 250, 562, 893, 1086
DpnII	GATC	6 cut(s)	42, 145, 248, 560, 891, 1084
EaeI	YGGCCR	1 cut(s)	1063
Eam1104I	CTCTTC	2 cut(s)	492, 882
EarI	CTCTTC	2 cut(s)	492, 882
Eco130I	CCWWGG	1 cut(s)	1060
Eco47I	GGWCC	1 cut(s)	87
Eco57I	CTGAAG	2 cut(s)	273, 956
Eco81I	CCTNAGG	1 cut(s)	596
EcoO109I	RGGNCCY	1 cut(s)	87
EcoRI	GAATTC	1 cut(s)	1395
EcoRII	CCWGG	1 cut(s)	751
EcoT14I	CCWWGG	1 cut(s)	1060
EcoT22I	ATGCAT	2 cut(s)	132, 1107
ErhI	CCWWGG	1 cut(s)	1060
FaeI	CATG	8 cut(s)	134, 146, 574, 782, 929, 1012, 1109, 1201
FalI	AAGNNNNNCTT	2 cut(s)	631, 663
FatI	CATG	8 cut(s)	130, 142, 570, 778, 925, 1008, 1105, 1197
FauI	CCCGC	1 cut(s)	390
FblI	GTMKAC	1 cut(s)	215
Fnu4HI	GCNGC	4 cut(s)	575, 862, 920, 1323
FokI	GGATG	3 cut(s)	812, 997, 1154
Fsp4HI	GCNGC	4 cut(s)	575, 862, 920, 1323
FspBI	CTAG	3 cut(s)	317, 630, 1314
GluI	GCNGC	4 cut(s)	575, 862, 920, 1323
GsaI	CCCAGC	1 cut(s)	1257
HaeIII	GGCC	2 cut(s)	812, 1065
Hin1II	CATG	8 cut(s)	134, 146, 574, 782, 929, 1012, 1109, 1201
HincII	GTYRAC	2 cut(s)	670, 1293
HindII	GTYRAC	2 cut(s)	670, 1293
HinfI	GANTC	4 cut(s)	333, 440, 991, 1364
HpaI	GTTAAC	2 cut(s)	670, 1293
HphI	GGTGA	1 cut(s)	937
Hpy166II	GTNNAC	5 cut(s)	216, 299, 670, 1002, 1293
Hpy188I	TCNGA	8 cut(s)	73, 199, 253, 267, 355, 554, 688, 713
Hpy188III	TCNNGA	7 cut(s)	117, 879, 895, 926, 1262, 1314, 1331
Hpy8I	GTNNAC	5 cut(s)	216, 299, 670, 1002, 1293
HpyAV	CCTTC	7 cut(s)	23, 100, 683, 727, 1083, 1268, 1364
HpyCH4III	ACNGT	1 cut(s)	684
HpyF10VI	GCNNNNNNNGC	4 cut(s)	508, 571, 809, 1041
HpyF3I	CTNAG	4 cut(s)	507, 596, 757, 1287
Hsp92II	CATG	8 cut(s)	134, 146, 574, 782, 929, 1012, 1109, 1201
KspAI	GTTAAC	2 cut(s)	670, 1293
Kzo9I	GATC	6 cut(s)	42, 145, 248, 560, 891, 1084
LguI	GCTCTTC	1 cut(s)	492
LmnI	GCTCC	3 cut(s)	858, 1264, 1341
Lsp1109I	GCAGC	4 cut(s)	561, 873, 931, 1309
LweI	GCATC	7 cut(s)	366, 469, 619, 790, 819, 901, 1030
MaeI	CTAG	3 cut(s)	317, 630, 1314
MaeIII	GTNAC	4 cut(s)	107, 114, 344, 741
MalI	GATC	6 cut(s)	44, 147, 250, 562, 893, 1086
MboI	GATC	6 cut(s)	42, 145, 248, 560, 891, 1084
MfeI	CAATTG	2 cut(s)	444, 804
MflI	RGATCY	2 cut(s)	248, 1084
MlsI	TGGCCA	1 cut(s)	1065
MluNI	TGGCCA	1 cut(s)	1065
MmeI	TCCRAC	2 cut(s)	121, 165
Mox20I	TGGCCA	1 cut(s)	1065
Mph1103I	ATGCAT	2 cut(s)	132, 1107
MscI	TGGCCA	1 cut(s)	1065
MseI	TTAA	8 cut(s)	386, 542, 669, 825, 951, 1080, 1242, 1292
MslI	CAYNNNNRTG	4 cut(s)	105, 837, 1007, 1026
Msp20I	TGGCCA	1 cut(s)	1065
MspR9I	CCNGG	1 cut(s)	753
MunI	CAATTG	2 cut(s)	444, 804
Mva1269I	GAATGC	1 cut(s)	278
MvaI	CCWGG	1 cut(s)	753
MvnI	CGCG	1 cut(s)	880
MwoI	GCNNNNNNNGC	4 cut(s)	508, 571, 809, 1041
NdeII	GATC	6 cut(s)	42, 145, 248, 560, 891, 1084
NlaIII	CATG	8 cut(s)	134, 146, 574, 782, 929, 1012, 1109, 1201
NlaIV	GGNNCC	3 cut(s)	363, 1153, 1387
NmeAIII	GCCGAG	1 cut(s)	205
NmuCI	GTSAC	4 cut(s)	107, 114, 344, 741
NruI	TCGCGA	1 cut(s)	880
NsiI	ATGCAT	2 cut(s)	132, 1107
OliI	CACNNNNGTG	1 cut(s)	105
PagI	TCATGA	1 cut(s)	925
PciSI	GCTCTTC	1 cut(s)	492
PctI	GAATGC	1 cut(s)	278
PfeI	GAWTC	4 cut(s)	333, 440, 991, 1364
PflMI	CCANNNNNTGG	1 cut(s)	1061
PkrI	GCNGC	4 cut(s)	576, 863, 921, 1324
Ple19I	CGATCG	1 cut(s)	563
PpuMI	RGGWCCY	1 cut(s)	87
PshBI	ATTAAT	1 cut(s)	542
Psp5II	RGGWCCY	1 cut(s)	87
Psp6I	CCWGG	1 cut(s)	751
PspFI	CCCAGC	1 cut(s)	1253
PspGI	CCWGG	1 cut(s)	751
PspN4I	GGNNCC	3 cut(s)	363, 1153, 1387
PspPI	GGNCC	1 cut(s)	87
PspPPI	RGGWCCY	1 cut(s)	87
PsrI	GAACNNNNNNTAC	2 cut(s)	859, 891
PstI	CTGCAG	3 cut(s)	537, 583, 921
PsuI	RGATCY	2 cut(s)	248, 1084
PvuI	CGATCG	1 cut(s)	563
RruI	TCGCGA	1 cut(s)	880
RsaI	GTAC	4 cut(s)	868, 906, 967, 1016
RsaNI	GTAC	4 cut(s)	867, 905, 966, 1015
RseI	CAYNNNNRTG	4 cut(s)	105, 837, 1007, 1026
SapI	GCTCTTC	1 cut(s)	492
SaqAI	TTAA	8 cut(s)	386, 542, 669, 825, 951, 1080, 1242, 1292
SatI	GCNGC	4 cut(s)	575, 862, 920, 1323
Sau3AI	GATC	6 cut(s)	42, 145, 248, 560, 891, 1084
Sau96I	GGNCC	1 cut(s)	87
ScaI	AGTACT	1 cut(s)	868
ScrFI	CCNGG	1 cut(s)	753
SfaNI	GCATC	7 cut(s)	366, 469, 619, 790, 819, 901, 1030
SfcI	CTRYAG	4 cut(s)	533, 579, 917, 1390
SinI	GGWCC	1 cut(s)	87
SmiMI	CAYNNNNRTG	4 cut(s)	105, 837, 1007, 1026
SsiI	CCGC	2 cut(s)	397, 1339
SspI	AATATT	1 cut(s)	619
SspMI	CTAG	3 cut(s)	317, 630, 1314
StyD4I	CCNGG	1 cut(s)	751
StyI	CCWWGG	1 cut(s)	1060
TaaI	ACNGT	1 cut(s)	684
TaqI	TCGA	3 cut(s)	45, 559, 894
TatI	WGTACW	1 cut(s)	866
TfiI	GAWTC	4 cut(s)	333, 440, 991, 1364
Tru1I	TTAA	8 cut(s)	386, 542, 669, 825, 951, 1080, 1242, 1292
Tru9I	TTAA	8 cut(s)	386, 542, 669, 825, 951, 1080, 1242, 1292
TscAI	CASTG	4 cut(s)	112, 289, 796, 921
TseFI	GTSAC	4 cut(s)	107, 114, 344, 741
TseI	GCWGC	4 cut(s)	574, 861, 919, 1322
Tsp45I	GTSAC	4 cut(s)	107, 114, 344, 741
TspDTI	ATGAA	4 cut(s)	900, 942, 1214, 1248
TspRI	CASTG	4 cut(s)	112, 289, 796, 921
Van91I	CCANNNNNTGG	1 cut(s)	1061
VpaK11BI	GGWCC	1 cut(s)	87
VspI	ATTAAT	1 cut(s)	542
XapI	RAATTY	7 cut(s)	193, 269, 601, 971, 1187, 1379, 1395
XbaI	TCTAGA	1 cut(s)	1313
XmiI	GTMKAC	1 cut(s)	215
XspI	CTAG	3 cut(s)	317, 630, 1314
ZrmI	AGTACT	1 cut(s)	868
Zsp2I	ATGCAT	2 cut(s)	132, 1107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.