Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004242

Physical Location & Seq

Genomic Coordinates Reverse (-)

61839148 .. 61844936

Gene Structure 5789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00328760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGAAAGAATGGGAGAAGTGGTCATCTTTAGAAGATGAAAGGCTTAAAGGATTTCCCAGCCTTCGGGAGCTTTTCATATTTAGATGTCCCAAGTTAACAAAGTTTACACATGGATTTGCTTCTCTAGAAAAGCTGCGCATCAAGAACTGCGGAGCAATAACTACCTTCTCACAGAATCCTGCACTTGGGAAATTGGAACCTGTAGAATTCCCTAGCCTGCAACTGCTTGTTCTTGTTGGTTGCAGTGACCTTGAAAACCTTCCTTTTTCCCTCCCTTCGTTGAAAGTTCTTGAGATAGATGGATGTGAAAAATTGGCTGCACTTCCAAGGATGGTGGAACTTAGTACATTGTACCTGATCGATTCAAATGCTGAATTACTTGGATGGATTATGGAATTTAGCTCACTGACCTCTTTGCACCTAACTCATATTCCACATGTGAAGCATCTACCTGAAGGCTTTATCCAACAGTCTGCAAAACTTGAAGAATTGAGTCTTGCAGGCTTTCCTGACCTTGAATATTTGGCAGATGACCGAGTTGGACTAGCACACCTTGTATCCCTTCAACGCTTGACAATATCCCATTGTCCTGAGTTTGTTGCTTTGCCTGATGAAGATGATCAGCTCCCACCTGTACTTAAATATTTGGATTTGAAACATTGTCCTAGCCTGATGAAGCTGCCGGGTAAACTTCACAACCTTGAGTGTCTTGTAGAGCTGCAGATTGAATGGTGTTCAAAGATTGAAGCATTTCCAGATGTGGGGTTGCCTGACAAACTGAAGCGTCTTGTAGTCCGCGAATGTGGGGCTCTGAAGACCATTCCTCAGGAGCTTCTCTGCAATAACAATTTTCTCGAGTATTTAGAAGTTCATAAATGTCCTTCTCTTGTGTCAGTTCTTGAAGAAGGAAACTTGCCATCAACTCTAACACATATGAAATTTTACTATTGCAAAATTCTGGGATCACTGCCTGAGGGTTTGATGCACAAAGACAATATGACTCTAAGGTACTTGGAGATAGACAACTGTTCCTCTCTCATGTCCTTTCCAAATGGTGAGTTACCAACAAGCCTTGAGCGTCTTGAGATTAGTGATTGCTCTAATTTCCAGACATTGTCATTGAGCCTTCTCAACCTCACGAATCTTGAGACCTTGGAAGTAAAGAGCTGCCCCTTCAGGACTTTCCAGAGGGTGGATTGCCACCCAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

403

Amino Acids

45.65

Weight (kDa)

5.31

Isoelectric Point (pI)

44.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004242)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01950 FvH4_7g01950 FvH4_7g01950 FvH4_7g01950 FvH4_7g01950
malus_domestica	MD07G1025200.v1.1
prunus_persica	Prupe.2G025700_v2.0.a1
pyrus_communis	pycom07g01950
rosa_chinensis	RchiOBHm_Chr1g0318941
rosa_multiflora	Rmu_sc0000504.1_g000032 Rmu_sc0001304.1_g000001 Rmu_sc0001304.1_g000002 Rmu_sc0001304.1_g000003 Rmu_sc0006228.1_g000001 Rmu_sc0009454.1_g000007
rosa_roxburghii	Rroxscaffold_4G00328760 Rroxscaffold_4G00328790 Rroxscaffold_4G00328810
rosa_rugosa	Rorug01G0025200 Rorug01G0025500 Rorug01G0025600
rosa_samantha	Rh1AG037200 Rh1AG037300 Rh1AG037400 Rh1BG033400 Rh1BG033800 Rh1CG036600 Rh1DG033700 Rh1DG034000
rosa_wichuraiana	Rw0G005440 Rw0G015080 Rw1G002890 Rw1G002900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	137
AccB7I	CCANNNNNTGG	1 cut(s)	1192
AccII	CGCG	1 cut(s)	798
AciI	CCGC	2 cut(s)	150, 796
AclWI	GGATC	1 cut(s)	970
AcsI	RAATTY	4 cut(s)	206, 395, 938, 954
AcuI	CTGAAG	4 cut(s)	474, 800, 833, 1159
AfaI	GTAC	4 cut(s)	346, 353, 636, 1010
AfiI	CCNNNNNNNGG	4 cut(s)	63, 185, 761, 1192
AflIII	ACRYGT	1 cut(s)	436
AluBI	AGCT	8 cut(s)	70, 133, 402, 625, 679, 718, 832, 1167
AluI	AGCT	8 cut(s)	70, 133, 402, 625, 679, 718, 832, 1167
Alw26I	GTCTC	1 cut(s)	1142
AlwI	GGATC	1 cut(s)	970
Ama87I	CYCGRG	1 cut(s)	854
ApeKI	GCWGC	5 cut(s)	133, 317, 679, 718, 1167
ApoI	RAATTY	4 cut(s)	206, 395, 938, 954
Asp700I	GAANNNNTTC	2 cut(s)	258, 750
AspLEI	GCGC	1 cut(s)	138
AsuC2I	CCSGG	1 cut(s)	684
AsuHPI	GGTGA	1 cut(s)	1067
AvaI	CYCGRG	1 cut(s)	854
AxyI	CCTNAGG	2 cut(s)	825, 972
BanII	GRGCYC	1 cut(s)	811
BbsI	GAAGAC	1 cut(s)	821
BbvI	GCAGC	5 cut(s)	120, 304, 666, 705, 1154
BccI	CCATC	4 cut(s)	293, 325, 378, 925
BcgI	CGANNNNNNTGC	2 cut(s)	350, 384
BciVI	GTATCC	1 cut(s)	568
BclI	TGATCA	1 cut(s)	619
BcnI	CCSGG	1 cut(s)	684
BcoDI	GTCTC	1 cut(s)	1142
BfaI	CTAG	4 cut(s)	125, 213, 545, 666
BfmI	CTRYAG	2 cut(s)	201, 719
BfuI	GTATCC	1 cut(s)	568
BisI	GCNGC	5 cut(s)	134, 318, 680, 719, 1168
BlsI	GCNGC	5 cut(s)	135, 319, 681, 720, 1169
Bme1390I	CCNGG	1 cut(s)	684
BmeT110I	CYCGRG	1 cut(s)	854
BmiI	GGNNCC	1 cut(s)	198
BmrFI	CCNGG	1 cut(s)	684
BmsI	GCATC	3 cut(s)	147, 454, 972
BpiI	GAAGAC	1 cut(s)	821
BpuEI	CTTGAG	5 cut(s)	311, 722, 1094, 1103, 1166
BpuMI	CCSGG	1 cut(s)	684
Bsa29I	ATCGAT	1 cut(s)	360
BsaI	GGTCTC	1 cut(s)	1142
BsaJI	CCNNGG	2 cut(s)	326, 1152
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bsc4I	CCNNNNNNNGG	4 cut(s)	63, 185, 761, 1192
Bse21I	CCTNAGG	2 cut(s)	825, 972
BseCI	ATCGAT	1 cut(s)	360
BseDI	CCNNGG	2 cut(s)	326, 1152
BseGI	GGATG	3 cut(s)	308, 336, 389
BseLI	CCNNNNNNNGG	4 cut(s)	63, 185, 761, 1192
BseMII	CTCAG	3 cut(s)	582, 839, 963
BseXI	GCAGC	5 cut(s)	120, 304, 666, 705, 1154
BseYI	CCCAGC	1 cut(s)	56
BsgI	GTGCAG	2 cut(s)	165, 303
Bsh1236I	CGCG	1 cut(s)	798
BshVI	ATCGAT	1 cut(s)	360
BsiHKCI	CYCGRG	1 cut(s)	854
BsiSI	CCGG	1 cut(s)	683
BslFI	GGGAC	1 cut(s)	72
BslI	CCNNNNNNNGG	4 cut(s)	63, 185, 761, 1192
BsmAI	GTCTC	1 cut(s)	1142
BsmFI	GGGAC	1 cut(s)	72
Bso31I	GGTCTC	1 cut(s)	1142
BsoBI	CYCGRG	1 cut(s)	854
Bsp1286I	GDGCHC	1 cut(s)	811
Bsp143I	GATC	3 cut(s)	357, 619, 962
BspACI	CCGC	2 cut(s)	150, 796
BspCNI	CTCAG	3 cut(s)	583, 838, 964
BspDI	ATCGAT	1 cut(s)	360
BspFNI	CGCG	1 cut(s)	798
BspLI	GGNNCC	1 cut(s)	198
BspMAI	CTGCAG	1 cut(s)	723
BspPI	GGATC	1 cut(s)	970
BspTNI	GGTCTC	1 cut(s)	1142
BssECI	CCNNGG	2 cut(s)	326, 1152
BssMI	GATC	3 cut(s)	357, 619, 962
BssT1I	CCWWGG	2 cut(s)	326, 1152
Bst4CI	ACNGT	2 cut(s)	471, 1028
BstC8I	GCNNGC	2 cut(s)	218, 502
BstDEI	CTNAG	5 cut(s)	341, 591, 825, 972, 1004
BstF5I	GGATG	3 cut(s)	308, 336, 389
BstFNI	CGCG	1 cut(s)	798
BstHHI	GCGC	1 cut(s)	138
BstKTI	GATC	3 cut(s)	360, 622, 965
BstMAI	GTCTC	1 cut(s)	1142
BstMBI	GATC	3 cut(s)	357, 619, 962
BstNSI	RCATGY	1 cut(s)	440
BstSCI	CCNGG	1 cut(s)	682
BstSFI	CTRYAG	2 cut(s)	201, 719
BstUI	CGCG	1 cut(s)	798
BstV1I	GCAGC	5 cut(s)	120, 304, 666, 705, 1154
BstV2I	GAAGAC	1 cut(s)	821
Bsu15I	ATCGAT	1 cut(s)	360
Bsu36I	CCTNAGG	2 cut(s)	825, 972
BsuI	GTATCC	1 cut(s)	568
BsuTUI	ATCGAT	1 cut(s)	360
BtsCI	GGATG	3 cut(s)	308, 336, 389
BtsI	GCAGTG	2 cut(s)	250, 965
BtsIMutI	CAGTG	3 cut(s)	250, 404, 965
Cac8I	GCNNGC	2 cut(s)	218, 502
CfoI	GCGC	1 cut(s)	138
ClaI	ATCGAT	1 cut(s)	360
CseI	GACGC	2 cut(s)	773, 1067
Csp6I	GTAC	4 cut(s)	345, 352, 635, 1009
CspCI	CAANNNNNGTGG	2 cut(s)	315, 350
CviAII	CATG	3 cut(s)	110, 437, 1039
CviQI	GTAC	4 cut(s)	345, 352, 635, 1009
DdeI	CTNAG	5 cut(s)	341, 591, 825, 972, 1004
DpnI	GATC	3 cut(s)	359, 621, 964
DpnII	GATC	3 cut(s)	357, 619, 962
Eco130I	CCWWGG	2 cut(s)	326, 1152
Eco24I	GRGCYC	1 cut(s)	811
Eco31I	GGTCTC	1 cut(s)	1142
Eco57I	CTGAAG	4 cut(s)	474, 800, 833, 1159
Eco81I	CCTNAGG	2 cut(s)	825, 972
Eco88I	CYCGRG	1 cut(s)	854
EcoRI	GAATTC	1 cut(s)	206
EcoT14I	CCWWGG	2 cut(s)	326, 1152
EcoT38I	GRGCYC	1 cut(s)	811
ErhI	CCWWGG	2 cut(s)	326, 1152
FaeI	CATG	3 cut(s)	113, 440, 1042
FaqI	GGGAC	1 cut(s)	72
FatI	CATG	3 cut(s)	109, 436, 1038
FauNDI	CATATG	1 cut(s)	933
FbaI	TGATCA	1 cut(s)	619
Fnu4HI	GCNGC	5 cut(s)	134, 318, 680, 719, 1168
FokI	GGATG	3 cut(s)	315, 343, 396
FriOI	GRGCYC	1 cut(s)	811
Fsp4HI	GCNGC	5 cut(s)	134, 318, 680, 719, 1168
FspBI	CTAG	4 cut(s)	125, 213, 545, 666
FspI	TGCGCA	1 cut(s)	137
GlaI	GCGC	1 cut(s)	137
GluI	GCNGC	5 cut(s)	134, 318, 680, 719, 1168
GsaI	CCCAGC	1 cut(s)	60
HapII	CCGG	1 cut(s)	683
HgaI	GACGC	2 cut(s)	773, 1067
HhaI	GCGC	1 cut(s)	138
Hin1II	CATG	3 cut(s)	113, 440, 1042
Hin6I	GCGC	1 cut(s)	136
HinP1I	GCGC	1 cut(s)	136
HincII	GTYRAC	1 cut(s)	96
HindII	GTYRAC	1 cut(s)	96
HinfI	GANTC	5 cut(s)	175, 362, 493, 1000, 1141
HpaI	GTTAAC	1 cut(s)	96
HpaII	CCGG	1 cut(s)	683
HphI	GGTGA	1 cut(s)	1067
Hpy166II	GTNNAC	3 cut(s)	96, 105, 689
Hpy188I	TCNGA	1 cut(s)	813
Hpy8I	GTNNAC	3 cut(s)	96, 105, 689
HpyCH4III	ACNGT	2 cut(s)	471, 1028
HpyF3I	CTNAG	5 cut(s)	341, 591, 825, 972, 1004
Hsp92II	CATG	3 cut(s)	113, 440, 1042
HspAI	GCGC	1 cut(s)	136
Ksp22I	TGATCA	1 cut(s)	619
KspAI	GTTAAC	1 cut(s)	96
Kzo9I	GATC	3 cut(s)	357, 619, 962
LmnI	GCTCC	4 cut(s)	67, 152, 630, 829
Lsp1109I	GCAGC	5 cut(s)	120, 304, 666, 705, 1154
LweI	GCATC	3 cut(s)	147, 454, 972
MaeI	CTAG	4 cut(s)	125, 213, 545, 666
MaeIII	GTNAC	2 cut(s)	245, 1059
MalI	GATC	3 cut(s)	359, 621, 964
MboI	GATC	3 cut(s)	357, 619, 962
MboII	GAAGA	5 cut(s)	44, 497, 626, 826, 914
MhlI	GDGCHC	1 cut(s)	811
MlyI	GAGTC	2 cut(s)	502, 994
MmeI	TCCRAC	2 cut(s)	490, 520
MnlI	CCTC	7 cut(s)	281, 421, 834, 967, 1042, 1145, 1182
MroXI	GAANNNNTTC	2 cut(s)	258, 750
MseI	TTAA	3 cut(s)	45, 95, 639
MspI	CCGG	1 cut(s)	683
MspR9I	CCNGG	1 cut(s)	684
MvnI	CGCG	1 cut(s)	798
NciI	CCSGG	1 cut(s)	684
NdeI	CATATG	1 cut(s)	933
NdeII	GATC	3 cut(s)	357, 619, 962
NlaIII	CATG	3 cut(s)	113, 440, 1042
NlaIV	GGNNCC	1 cut(s)	198
NmuCI	GTSAC	1 cut(s)	245
NsbI	TGCGCA	1 cut(s)	137
NspI	RCATGY	1 cut(s)	440
PaeR7I	CTCGAG	1 cut(s)	854
PciI	ACATGT	1 cut(s)	436
PdmI	GAANNNNTTC	2 cut(s)	258, 750
PfeI	GAWTC	3 cut(s)	175, 362, 1141
PflFI	GACNNNGTC	1 cut(s)	1114
PflMI	CCANNNNNTGG	1 cut(s)	1192
PkrI	GCNGC	5 cut(s)	135, 319, 681, 720, 1169
PleI	GAGTC	2 cut(s)	501, 994
PpsI	GAGTC	2 cut(s)	501, 994
PscI	ACATGT	1 cut(s)	436
PspFI	CCCAGC	1 cut(s)	56
PspN4I	GGNNCC	1 cut(s)	198
PstI	CTGCAG	1 cut(s)	723
PsyI	GACNNNGTC	1 cut(s)	1114
RsaI	GTAC	4 cut(s)	346, 353, 636, 1010
RsaNI	GTAC	4 cut(s)	345, 352, 635, 1009
SaqAI	TTAA	3 cut(s)	45, 95, 639
SatI	GCNGC	5 cut(s)	134, 318, 680, 719, 1168
Sau3AI	GATC	3 cut(s)	357, 619, 962
SchI	GAGTC	2 cut(s)	502, 994
ScrFI	CCNGG	1 cut(s)	684
SduI	GDGCHC	1 cut(s)	811
SfaNI	GCATC	3 cut(s)	147, 454, 972
SfcI	CTRYAG	2 cut(s)	201, 719
Sfr274I	CTCGAG	1 cut(s)	854
SlaI	CTCGAG	1 cut(s)	854
SmlI	CTYRAG	6 cut(s)	290, 701, 854, 1073, 1082, 1145
SmoI	CTYRAG	6 cut(s)	290, 701, 854, 1073, 1082, 1145
SsiI	CCGC	2 cut(s)	150, 796
SspI	AATATT	2 cut(s)	521, 644
SspMI	CTAG	4 cut(s)	125, 213, 545, 666
StyD4I	CCNGG	1 cut(s)	682
StyI	CCWWGG	2 cut(s)	326, 1152
TaaI	ACNGT	2 cut(s)	471, 1028
TaqI	TCGA	2 cut(s)	360, 855
TaqII	GACCGA	1 cut(s)	549
TatI	WGTACW	2 cut(s)	344, 634
TfiI	GAWTC	3 cut(s)	175, 362, 1141
Tru1I	TTAA	3 cut(s)	45, 95, 639
Tru9I	TTAA	3 cut(s)	45, 95, 639
TscAI	CASTG	3 cut(s)	250, 411, 972
TseFI	GTSAC	1 cut(s)	245
TseI	GCWGC	5 cut(s)	133, 317, 679, 718, 1167
Tsp45I	GTSAC	1 cut(s)	245
TspDTI	ATGAA	7 cut(s)	17, 51, 64, 627, 689, 860, 950
TspRI	CASTG	3 cut(s)	250, 411, 972
Tth111I	GACNNNGTC	1 cut(s)	1114
Van91I	CCANNNNNTGG	1 cut(s)	1192
XapI	RAATTY	4 cut(s)	206, 395, 938, 954
XbaI	TCTAGA	1 cut(s)	124
XceI	RCATGY	1 cut(s)	440
XhoI	CTCGAG	1 cut(s)	854
XmnI	GAANNNNTTC	2 cut(s)	258, 750
XspI	CTAG	4 cut(s)	125, 213, 545, 666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.