Rh1AG037300

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0004242
Physical Location & Seq
Forward (+)
6565513 .. 6568530
3018 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG037300.1

Sequence Viewer

Length: 402 bp
ATGACTCTAAAGTACTTGGAGATAGACAACTGTTCCTCTCTCATGTTCTTTCACAATGGTGAGTTACCAACAAGTCTTGAGCGTCTTGAGATTAGTGATTGCTCTAATTTCCAGACATTGCCATTGAGCCTTCTCAACCTCACGAATCTTGAGACCTTGGAAGTAAAGAGCTGCCCCCTTCTTCAGGACTTTCCAGAGGGTGGATTGCCACCCAACATAAAGTTTGTCACAATTTCCGAATGCCAGAACTGGTGTGAGTGGGAAAACAATGGTGTCATTTGGAGGAAATTGTCAGCCCCAGTAAATGATTGCCGAGAAAATCCAAATGGGATGGCAAGTGCTGAAGTACAAAATCTGCACATAGAAGAAACCTTAGTATCATCAGCAACCCAAGAAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

133

Amino Acids

15.02

Weight (kDa)

4.42

Isoelectric Point (pI)

43.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_EndoS PF23952 3 - 64 1e-05 Endo-beta-N-acetylglucosaminidase EndoS LRR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 200
AcuI CTGAAG 2 cut(s) 167, 363
AfaI GTAC 2 cut(s) 14, 348
AfiI CCNNNNNNNGG 2 cut(s) 184, 200
AleI CACNNNNGTG 1 cut(s) 57
AluBI AGCT 1 cut(s) 171
AluI AGCT 1 cut(s) 171
Alw26I GTCTC 1 cut(s) 146
ApeKI GCWGC 1 cut(s) 171
AsuHPI GGTGA 1 cut(s) 71
BaeI ACNNNNGTAYC 2 cut(s) 360, 393
BbvI GCAGC 1 cut(s) 158
BccI CCATC 1 cut(s) 325
BcoDI GTCTC 1 cut(s) 146
BisI GCNGC 1 cut(s) 172
BlsI GCNGC 1 cut(s) 173
BmcAI AGTACT 1 cut(s) 14
BmrI ACTGGG 1 cut(s) 293
BmuI ACTGGG 1 cut(s) 293
BpuEI CTTGAG 3 cut(s) 98, 107, 170
BsaI GGTCTC 1 cut(s) 146
BsaJI CCNNGG 1 cut(s) 156
Bsc4I CCNNNNNNNGG 2 cut(s) 184, 200
Bse1I ACTGG 2 cut(s) 254, 299
Bse3DI GCAATG 1 cut(s) 116
BseDI CCNNGG 1 cut(s) 156
BseGI GGATG 1 cut(s) 336
BseLI CCNNNNNNNGG 2 cut(s) 184, 200
BseMI GCAATG 1 cut(s) 116
BseNI ACTGG 2 cut(s) 254, 299
BseXI GCAGC 1 cut(s) 158
BsgI GTGCAG 1 cut(s) 341
BslI CCNNNNNNNGG 2 cut(s) 184, 200
BsmAI GTCTC 1 cut(s) 146
BsmI GAATGC 1 cut(s) 245
Bso31I GGTCTC 1 cut(s) 146
BspTNI GGTCTC 1 cut(s) 146
BsrDI GCAATG 1 cut(s) 116
BsrI ACTGG 2 cut(s) 254, 299
BssECI CCNNGG 1 cut(s) 156
BssT1I CCWWGG 1 cut(s) 156
Bst4CI ACNGT 1 cut(s) 32
BstDEI CTNAG 1 cut(s) 373
BstENI CCTNNNNNAGG 1 cut(s) 182
BstF5I GGATG 1 cut(s) 336
BstMAI GTCTC 1 cut(s) 146
BstV1I GCAGC 1 cut(s) 158
BtsCI GGATG 1 cut(s) 336
CseI GACGC 1 cut(s) 71
Csp6I GTAC 2 cut(s) 13, 347
CviAII CATG 1 cut(s) 43
CviJI RGCY 3 cut(s) 129, 171, 296
CviKI_1 RGCY 3 cut(s) 129, 171, 296
CviQI GTAC 2 cut(s) 13, 347
DdeI CTNAG 1 cut(s) 373
Eco130I CCWWGG 1 cut(s) 156
Eco31I GGTCTC 1 cut(s) 146
Eco57I CTGAAG 2 cut(s) 167, 363
EcoNI CCTNNNNNAGG 1 cut(s) 182
EcoT14I CCWWGG 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 1 cut(s) 46
FaiI YATR 3 cut(s) 44, 218, 362
FatI CATG 1 cut(s) 42
Fnu4HI GCNGC 1 cut(s) 172
FokI GGATG 1 cut(s) 343
Fsp4HI GCNGC 1 cut(s) 172
GluI GCNGC 1 cut(s) 172
HgaI GACGC 1 cut(s) 71
Hin1II CATG 1 cut(s) 46
HinfI GANTC 2 cut(s) 4, 145
HphI GGTGA 1 cut(s) 71
Hpy188I TCNGA 1 cut(s) 238
Hpy188III TCNNGA 7 cut(s) 77, 86, 112, 142, 149, 185, 194
HpyAV CCTTC 2 cut(s) 140, 188
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4V TGCA 1 cut(s) 358
HpyF3I CTNAG 1 cut(s) 373
Hsp92II CATG 1 cut(s) 46
LpnPI CCDG 6 cut(s) 125, 170, 207, 235, 257, 312
Lsp1109I GCAGC 1 cut(s) 158
MaeIII GTNAC 2 cut(s) 63, 226
MboII GAAGA 2 cut(s) 173, 377
MluCI AATT 3 cut(s) 106, 231, 287
MnlI CCTC 4 cut(s) 46, 149, 190, 276
MslI CAYNNNNRTG 1 cut(s) 57
Mva1269I GAATGC 1 cut(s) 245
NlaIII CATG 1 cut(s) 46
NmeAIII GCCGAG 1 cut(s) 338
NmuCI GTSAC 1 cut(s) 226
OliI CACNNNNGTG 1 cut(s) 57
PctI GAATGC 1 cut(s) 245
PfeI GAWTC 1 cut(s) 145
PflMI CCANNNNNTGG 1 cut(s) 200
PkrI GCNGC 1 cut(s) 173
RsaI GTAC 2 cut(s) 14, 348
RsaNI GTAC 2 cut(s) 13, 347
RseI CAYNNNNRTG 1 cut(s) 57
SatI GCNGC 1 cut(s) 172
ScaI AGTACT 1 cut(s) 14
SetI ASST 4 cut(s) 141, 158, 173, 374
SmiMI CAYNNNNRTG 1 cut(s) 57
SmlI CTYRAG 3 cut(s) 77, 86, 149
SmoI CTYRAG 3 cut(s) 77, 86, 149
Sse9I AATT 3 cut(s) 106, 231, 287
StyI CCWWGG 1 cut(s) 156
TaaI ACNGT 1 cut(s) 32
TasI AATT 3 cut(s) 106, 231, 287
TatI WGTACW 2 cut(s) 12, 346
TfiI GAWTC 1 cut(s) 145
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 1 cut(s) 171
Tsp45I GTSAC 1 cut(s) 226
Van91I CCANNNNNTGG 1 cut(s) 200
XagI CCTNNNNNAGG 1 cut(s) 182
ZrmI AGTACT 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.