Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0004242

Physical Location & Seq

Genomic Coordinates Forward (+)

5382376 .. 5383668

Gene Structure 1293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G002900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGAAGCTGCCTGTTAAACTTCACAACCTTGAGTGTCTTGCAGAGCTGCAGATTGAATGGTGTTCAAAGATTGAAGCATTTCCAGATGTGGGGTTGCCTGACAAACTGAAGCGTCTTGTAATCCGCGAATGTGGTGCTCTGAAGACCCTTCCTCAGGAGCTTCTCTGCAATAACAATTTTCTCGAGTATTTAGAAGTTCATAAATGTCCTTCTCTTGTGTCAGTTCTTGCAGAAGGAAACTTGCCATCAACTCTAACACATATGAAATTTTACTATTGCAAAATTCTGGGATCACTGCCTGAGGGTTTGATGCACAAAGACAATATGACTCTAAAGTACCTGGAGATACACAACTGTTCCTCTCTCATGTCCTTTCCAAATGGTGAGTTACCAACAAGCCTTGAGCGTCTTGAGATTAGTGATTGCTCTAATTTCCGGACACTGCCATTGAGCCTTCTCAATCTCACGAATCTTGAGACCTTGGAAATAAAGAGCTGCCCCCTTCTTCAGGACTTTCCAGAGGGTGGATTGCCACCCAACATAAAGTTTGTTACAATTTCCGAATGTGAGAATCTCAAGTCTCTACCTAAATTCTTTCATAAACTCAAATGTCTTCAGAAGTTGGAGATTTCTGGCTGTCCTAGTCTCCTGTCCTTCCCAAAGCAGGTTACTACATCTTTCATGATCAATCCAGAAGTACTTGCTAGATCCCATTCTGTACCAGAATCTATAGCTGGAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

247

Amino Acids

27.74

Weight (kDa)

6.18

Isoelectric Point (pI)

59.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004242)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01950 FvH4_7g01950 FvH4_7g01950 FvH4_7g01950 FvH4_7g01950
malus_domestica	MD07G1025200.v1.1
prunus_persica	Prupe.2G025700_v2.0.a1
pyrus_communis	pycom07g01950
rosa_chinensis	RchiOBHm_Chr1g0318941
rosa_multiflora	Rmu_sc0000504.1_g000032 Rmu_sc0001304.1_g000001 Rmu_sc0001304.1_g000002 Rmu_sc0001304.1_g000003 Rmu_sc0006228.1_g000001 Rmu_sc0009454.1_g000007
rosa_roxburghii	Rroxscaffold_4G00328760 Rroxscaffold_4G00328790 Rroxscaffold_4G00328810
rosa_rugosa	Rorug01G0025200 Rorug01G0025500 Rorug01G0025600
rosa_samantha	Rh1AG037200 Rh1AG037300 Rh1AG037400 Rh1BG033400 Rh1BG033800 Rh1CG036600 Rh1DG033700 Rh1DG034000
rosa_wichuraiana	Rw0G005440 Rw0G015080 Rw1G002890 Rw1G002900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	655
AccB7I	CCANNNNNTGG	1 cut(s)	524
AccII	CGCG	1 cut(s)	126
AccIII	TCCGGA	1 cut(s)	435
AciI	CCGC	1 cut(s)	124
AclWI	GGATC	2 cut(s)	298, 702
AcsI	RAATTY	3 cut(s)	266, 282, 590
AcuI	CTGAAG	4 cut(s)	128, 161, 491, 599
AfaI	GTAC	3 cut(s)	338, 699, 720
AfiI	CCNNNNNNNGG	5 cut(s)	89, 154, 508, 524, 664
AgsI	TTSAA	3 cut(s)	56, 66, 74
AjnI	CCWGG	1 cut(s)	339
AluBI	AGCT	5 cut(s)	7, 46, 160, 495, 734
AluI	AGCT	5 cut(s)	7, 46, 160, 495, 734
Alw21I	GWGCWC	1 cut(s)	139
Alw26I	GTCTC	3 cut(s)	470, 585, 650
AlwI	GGATC	2 cut(s)	298, 702
Ama87I	CYCGRG	1 cut(s)	182
Aor13HI	TCCGGA	1 cut(s)	435
ApeKI	GCWGC	3 cut(s)	7, 46, 495
ApoI	RAATTY	3 cut(s)	266, 282, 590
Asp700I	GAANNNNTTC	1 cut(s)	78
AsuHPI	GGTGA	1 cut(s)	395
AvaI	CYCGRG	1 cut(s)	182
AxyI	CCTNAGG	2 cut(s)	153, 300
BbsI	GAAGAC	2 cut(s)	149, 605
Bbv12I	GWGCWC	1 cut(s)	139
BbvI	GCAGC	2 cut(s)	33, 482
BccI	CCATC	1 cut(s)	253
BcgI	CGANNNNNNTGC	2 cut(s)	116, 150
BciT130I	CCWGG	1 cut(s)	341
BclI	TGATCA	1 cut(s)	684
BcoDI	GTCTC	3 cut(s)	470, 585, 650
BfaI	CTAG	2 cut(s)	642, 705
BfmI	CTRYAG	2 cut(s)	47, 729
BfuAI	ACCTGC	1 cut(s)	655
BisI	GCNGC	3 cut(s)	8, 47, 496
BlsI	GCNGC	3 cut(s)	9, 48, 497
BmcAI	AGTACT	1 cut(s)	699
Bme1390I	CCNGG	1 cut(s)	341
BmeT110I	CYCGRG	1 cut(s)	182
BmrFI	CCNGG	1 cut(s)	341
BmsI	GCATC	1 cut(s)	300
BpiI	GAAGAC	2 cut(s)	149, 605
BpmI	CTGGAG	1 cut(s)	362
BpuEI	CTTGAG	5 cut(s)	50, 422, 431, 494, 560
BsaI	GGTCTC	1 cut(s)	470
BsaJI	CCNNGG	1 cut(s)	480
BsaWI	WCCGGW	1 cut(s)	435
Bsc4I	CCNNNNNNNGG	5 cut(s)	89, 154, 508, 524, 664
Bse21I	CCTNAGG	2 cut(s)	153, 300
BseAI	TCCGGA	1 cut(s)	435
BseBI	CCWGG	1 cut(s)	341
BseDI	CCNNGG	1 cut(s)	480
BseLI	CCNNNNNNNGG	5 cut(s)	89, 154, 508, 524, 664
BseMII	CTCAG	2 cut(s)	167, 291
BseXI	GCAGC	2 cut(s)	33, 482
Bsh1236I	CGCG	1 cut(s)	126
BsiHKAI	GWGCWC	1 cut(s)	139
BsiHKCI	CYCGRG	1 cut(s)	182
BsiSI	CCGG	1 cut(s)	436
BslI	CCNNNNNNNGG	5 cut(s)	89, 154, 508, 524, 664
BsmAI	GTCTC	3 cut(s)	470, 585, 650
Bso31I	GGTCTC	1 cut(s)	470
BsoBI	CYCGRG	1 cut(s)	182
Bsp1286I	GDGCHC	1 cut(s)	139
Bsp13I	TCCGGA	1 cut(s)	435
Bsp143I	GATC	3 cut(s)	290, 684, 707
BspACI	CCGC	1 cut(s)	124
BspCNI	CTCAG	2 cut(s)	166, 292
BspEI	TCCGGA	1 cut(s)	435
BspFNI	CGCG	1 cut(s)	126
BspHI	TCATGA	1 cut(s)	681
BspMAI	CTGCAG	1 cut(s)	51
BspMI	ACCTGC	1 cut(s)	655
BspPI	GGATC	2 cut(s)	298, 702
BspTNI	GGTCTC	1 cut(s)	470
BssECI	CCNNGG	1 cut(s)	480
BssMI	GATC	3 cut(s)	290, 684, 707
BssT1I	CCWWGG	1 cut(s)	480
Bst2UI	CCWGG	1 cut(s)	341
Bst4CI	ACNGT	1 cut(s)	356
BstDEI	CTNAG	2 cut(s)	153, 300
BstENI	CCTNNNNNAGG	2 cut(s)	152, 506
BstFNI	CGCG	1 cut(s)	126
BstKTI	GATC	3 cut(s)	293, 687, 710
BstMAI	GTCTC	3 cut(s)	470, 585, 650
BstMBI	GATC	3 cut(s)	290, 684, 707
BstNI	CCWGG	1 cut(s)	341
BstSCI	CCNGG	1 cut(s)	339
BstSFI	CTRYAG	2 cut(s)	47, 729
BstUI	CGCG	1 cut(s)	126
BstV1I	GCAGC	2 cut(s)	33, 482
BstV2I	GAAGAC	2 cut(s)	149, 605
BstX2I	RGATCY	1 cut(s)	707
BstYI	RGATCY	1 cut(s)	707
Bsu36I	CCTNAGG	2 cut(s)	153, 300
BtsI	GCAGTG	2 cut(s)	293, 440
BtsIMutI	CAGTG	2 cut(s)	293, 440
BveI	ACCTGC	1 cut(s)	655
CciI	TCATGA	1 cut(s)	681
CseI	GACGC	2 cut(s)	101, 395
Csp6I	GTAC	3 cut(s)	337, 698, 719
CviAII	CATG	2 cut(s)	367, 682
CviJI	RGCY	8 cut(s)	7, 46, 160, 399, 453, 495, 636, 734
CviKI_1	RGCY	8 cut(s)	7, 46, 160, 399, 453, 495, 636, 734
CviQI	GTAC	3 cut(s)	337, 698, 719
DdeI	CTNAG	2 cut(s)	153, 300
DpnI	GATC	3 cut(s)	292, 686, 709
DpnII	GATC	3 cut(s)	290, 684, 707
Eco130I	CCWWGG	1 cut(s)	480
Eco31I	GGTCTC	1 cut(s)	470
Eco57I	CTGAAG	4 cut(s)	128, 161, 491, 599
Eco81I	CCTNAGG	2 cut(s)	153, 300
Eco88I	CYCGRG	1 cut(s)	182
EcoNI	CCTNNNNNAGG	2 cut(s)	152, 506
EcoRII	CCWGG	1 cut(s)	339
EcoT14I	CCWWGG	1 cut(s)	480
ErhI	CCWWGG	1 cut(s)	480
FaeI	CATG	2 cut(s)	370, 685
FaiI	YATR	9 cut(s)	201, 261, 263, 326, 368, 542, 600, 683, 731
FatI	CATG	2 cut(s)	366, 681
FauNDI	CATATG	1 cut(s)	261
FbaI	TGATCA	1 cut(s)	684
Fnu4HI	GCNGC	3 cut(s)	8, 47, 496
Fsp4HI	GCNGC	3 cut(s)	8, 47, 496
FspBI	CTAG	2 cut(s)	642, 705
GluI	GCNGC	3 cut(s)	8, 47, 496
GsuI	CTGGAG	1 cut(s)	362
HapII	CCGG	1 cut(s)	436
HgaI	GACGC	2 cut(s)	101, 395
Hin1II	CATG	2 cut(s)	370, 685
HinfI	GANTC	4 cut(s)	328, 469, 571, 725
HpaII	CCGG	1 cut(s)	436
HphI	GGTGA	1 cut(s)	395
Hpy188I	TCNGA	3 cut(s)	141, 562, 618
HpyAV	CCTTC	6 cut(s)	158, 219, 227, 464, 512, 664
HpyCH4III	ACNGT	1 cut(s)	356
HpyCH4V	TGCA	6 cut(s)	41, 49, 168, 230, 279, 313
HpyF3I	CTNAG	2 cut(s)	153, 300
Hsp92II	CATG	2 cut(s)	370, 685
Kpn2I	TCCGGA	1 cut(s)	435
Ksp22I	TGATCA	1 cut(s)	684
Kzo9I	GATC	3 cut(s)	290, 684, 707
LmnI	GCTCC	1 cut(s)	157
Lsp1109I	GCAGC	2 cut(s)	33, 482
LweI	GCATC	1 cut(s)	300
MaeI	CTAG	2 cut(s)	642, 705
MaeIII	GTNAC	3 cut(s)	387, 550, 667
MalI	GATC	3 cut(s)	292, 686, 709
MboI	GATC	3 cut(s)	290, 684, 707
MboII	GAAGA	3 cut(s)	154, 497, 605
MflI	RGATCY	1 cut(s)	707
MhlI	GDGCHC	1 cut(s)	139
MluCI	AATT	6 cut(s)	175, 266, 282, 430, 555, 590
MlyI	GAGTC	1 cut(s)	322
MmeI	TCCRAC	1 cut(s)	603
MnlI	CCTC	4 cut(s)	162, 295, 370, 514
MroI	TCCGGA	1 cut(s)	435
MroXI	GAANNNNTTC	1 cut(s)	78
MseI	TTAA	1 cut(s)	15
MspI	CCGG	1 cut(s)	436
MspR9I	CCNGG	1 cut(s)	341
MvaI	CCWGG	1 cut(s)	341
MvnI	CGCG	1 cut(s)	126
NdeI	CATATG	1 cut(s)	261
NdeII	GATC	3 cut(s)	290, 684, 707
NlaIII	CATG	2 cut(s)	370, 685
PaeR7I	CTCGAG	1 cut(s)	182
PagI	TCATGA	1 cut(s)	681
PdmI	GAANNNNTTC	1 cut(s)	78
PfeI	GAWTC	3 cut(s)	469, 571, 725
PflMI	CCANNNNNTGG	1 cut(s)	524
PkrI	GCNGC	3 cut(s)	9, 48, 497
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
Psp6I	CCWGG	1 cut(s)	339
PspGI	CCWGG	1 cut(s)	339
PstI	CTGCAG	1 cut(s)	51
PsuI	RGATCY	1 cut(s)	707
RsaI	GTAC	3 cut(s)	338, 699, 720
RsaNI	GTAC	3 cut(s)	337, 698, 719
SaqAI	TTAA	1 cut(s)	15
SatI	GCNGC	3 cut(s)	8, 47, 496
Sau3AI	GATC	3 cut(s)	290, 684, 707
ScaI	AGTACT	1 cut(s)	699
SchI	GAGTC	1 cut(s)	322
ScrFI	CCNGG	1 cut(s)	341
SduI	GDGCHC	1 cut(s)	139
SfaNI	GCATC	1 cut(s)	300
SfcI	CTRYAG	2 cut(s)	47, 729
Sfr274I	CTCGAG	1 cut(s)	182
SlaI	CTCGAG	1 cut(s)	182
SmlI	CTYRAG	6 cut(s)	29, 182, 401, 410, 473, 575
SmoI	CTYRAG	6 cut(s)	29, 182, 401, 410, 473, 575
Sse9I	AATT	6 cut(s)	175, 266, 282, 430, 555, 590
SsiI	CCGC	1 cut(s)	124
SspMI	CTAG	2 cut(s)	642, 705
StyD4I	CCNGG	1 cut(s)	339
StyI	CCWWGG	1 cut(s)	480
TaaI	ACNGT	1 cut(s)	356
TaqI	TCGA	1 cut(s)	183
TasI	AATT	6 cut(s)	175, 266, 282, 430, 555, 590
TatI	WGTACW	1 cut(s)	697
TfiI	GAWTC	3 cut(s)	469, 571, 725
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TscAI	CASTG	2 cut(s)	300, 447
TseI	GCWGC	3 cut(s)	7, 46, 495
TspDTI	ATGAA	5 cut(s)	17, 188, 278, 587, 670
TspRI	CASTG	2 cut(s)	300, 447
Van91I	CCANNNNNTGG	1 cut(s)	524
XagI	CCTNNNNNAGG	2 cut(s)	152, 506
XapI	RAATTY	3 cut(s)	266, 282, 590
XhoI	CTCGAG	1 cut(s)	182
XmnI	GAANNNNTTC	1 cut(s)	78
XspI	CTAG	2 cut(s)	642, 705
ZrmI	AGTACT	1 cut(s)	699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.