Rroxscaffold_4G00328810

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
61886940 .. 61898706
11767 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00328810.1

Sequence Viewer

Length: 1626 bp
ATGCCTATTGTTCGAGCACTTGAATCTGCTTCTGACATGAAAGAATGGGAGAAATGGTCATCTTTAGAAGATGAAAGGCTTAAAGGATTTCCCAGCCTTCGGGAGCTTTCCATATTTAGATGTCCCAAGTTAACAAAGTTTACACATGGATTTGCTTCTCTAGAAAAGCTGCGCATCAAGAACTGCAGAGCAATAACTACCTTCTCACAGAATCCTGCACTTGGGAATTTGGAACCTGTAGAATTCCCTAGCCTGCAACTGCTTGTTCTTGTTGGTTGTAGTGAGCTTGAAAACCTTCCTTTGTCCCTCCCTTTGTTGAAAGTGCTTGAGATAGATGGTTGTGAAAAATTGGCTGCACTTCCGAGGATGGTGGAACTTAGTAGATTGTACCTGATCGATTCAAATGCTGAATTACTTGGACGGAAGATGGAATTTAGCTCACTGACCTCTTTGCACCTAACTCATATTCCACATGTTAAGCATCTACCTGAAGGCTTTATCCAACAGTCTGCAAAACTTGAAGAATTGAGTCTTACAGGCTTTCCTGACCTTGAATATTTGGCAGATGACCGAGTTGGACTAGCACACCTTGTATCCCTTCAACGCTTGACAATATCCCATTGTCCTGAGTTTGTTGGTTTGCCTGATGAAGATGATCAGCTCCCACCTTTACTTAAATATTTGGATTTGAAATATTGTCCTAGCCTGATGAAGCTGCCTGTTAAACTTCACAACCTTGAGTGTCTTGCAGAGCTGCAGATTGAATGGTGTTCAAAGATTGAAGCATTTCCAGATGTGGGGTTGCCTGACAAACTGAAGCGTCTTGTAATCCGCGAATGTGGTGCTCTGAAGACCCTTCCTCAGGAGCTTCTCTGCAATAACGATTTTCTCGAGTATTTAGAAGTTTATAAATGTCCTTCTCTTGTGTCAGTTCTTGAAGAAGGAAACTTGCCATCAACTCTAACACATATGAAATTTTACTATTGCAAAATTCTGGGATCACTGCCTGAGGGTTTGATGCACAAAGACAATATGACTCTCAAGTACCTGGAGATACACAACTGTTCCTCTCTCATGTCCTTTCCAAATGGTGAGTTACCAACAAGCCTTGTGCGTCTTGAGATTAGTGATTGCTCTAATTTCCGGACATTGCCATTGAGCCTTCTCAATCTCACGAATCTTGAGACCTTGGAAGTAAAGAGCTGCCCCCTTCTTCAGGACTTTCCAGAGGGTGGATTGCCACCCAACATAAAGTTTGTCACAATTTCCGAATGTGAGAATCTCAAGTCTCTACCTAAATTCTTTCATAAACTCAAATGTCTTCAGAAGTTGGAGATTTCTGGCTGTCCTAGTCTCCTGTCCTTGCCAAAGCAGGGTCTGCCCAGCAGCTTAAGACTACTTATGGTTACTGATTGTGAAAAGCTTAATCCCATACATCAGTGGAGACTTCACAAACTACCCTCTCTAGATGTTTTCACCATTGGTGGATTTCCTGGCCTGAAGTCCTTTTCAAAAGATTATCCTCTTCCTCACACTTTAACCTCTTTAAGCATTCAAAGATTCCCAGATCTTGAATCCATATCGGAGAAGTACTTGCTAGATCCCATTCTGTACCAGAATCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

541

Amino Acids

61.24

Weight (kDa)

5.82

Isoelectric Point (pI)

48.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 909
Acc16I TGCGCA 1 cut(s) 173
AccB7I CCANNNNNTGG 1 cut(s) 1232
AccII CGCG 1 cut(s) 834
AccIII TCCGGA 1 cut(s) 1143
AciI CCGC 1 cut(s) 832
AclWI GGATC 2 cut(s) 1006, 1595
AcsI RAATTY 6 cut(s) 226, 242, 431, 974, 990, 1298
AcuI CTGAAG 6 cut(s) 510, 836, 869, 1199, 1307, 1520
AfaI GTAC 4 cut(s) 389, 1046, 1592, 1613
AfiI CCNNNNNNNGG 7 cut(s) 99, 221, 797, 862, 1216, 1232, 1373
AflII CTTAAG 1 cut(s) 1390
AflIII ACRYGT 1 cut(s) 472
AjnI CCWGG 2 cut(s) 1047, 1492
Alw21I GWGCWC 2 cut(s) 19, 847
Alw26I GTCTC 4 cut(s) 1178, 1293, 1358, 1438
AlwI GGATC 2 cut(s) 1006, 1595
AlwNI CAGNNNCTG 1 cut(s) 1378
Ama87I CYCGRG 1 cut(s) 890
Aor13HI TCCGGA 1 cut(s) 1143
AoxI GGCC 1 cut(s) 1495
ApeKI GCWGC 6 cut(s) 169, 353, 715, 754, 1203, 1386
ApoI RAATTY 6 cut(s) 226, 242, 431, 974, 990, 1298
Asp700I GAANNNNTTC 2 cut(s) 294, 786
AspLEI GCGC 1 cut(s) 174
AsuHPI GGTGA 2 cut(s) 1103, 1468
AvaI CYCGRG 1 cut(s) 890
AxyI CCTNAGG 2 cut(s) 861, 1008
BbsI GAAGAC 2 cut(s) 857, 1313
Bbv12I GWGCWC 2 cut(s) 19, 847
BbvI GCAGC 6 cut(s) 156, 340, 702, 741, 1190, 1398
BccI CCATC 4 cut(s) 329, 361, 421, 961
BcgI CGANNNNNNTGC 4 cut(s) 386, 420, 824, 858
BciT130I CCWGG 2 cut(s) 1049, 1494
BciVI GTATCC 1 cut(s) 604
BclI TGATCA 1 cut(s) 655
BcoDI GTCTC 4 cut(s) 1178, 1293, 1358, 1438
BfaI CTAG 7 cut(s) 161, 249, 581, 702, 1350, 1466, 1598
BfmI CTRYAG 4 cut(s) 184, 237, 755, 1622
BfrI CTTAAG 1 cut(s) 1390
BfuI GTATCC 1 cut(s) 604
BglII AGATCT 1 cut(s) 1567
BisI GCNGC 6 cut(s) 170, 354, 716, 755, 1204, 1387
BlsI GCNGC 6 cut(s) 171, 355, 717, 756, 1205, 1388
BmcAI AGTACT 1 cut(s) 1592
Bme1390I CCNGG 2 cut(s) 1049, 1494
BmeT110I CYCGRG 1 cut(s) 890
BmiI GGNNCC 1 cut(s) 234
BmrFI CCNGG 2 cut(s) 1049, 1494
BmsI GCATC 3 cut(s) 183, 490, 1008
BpiI GAAGAC 2 cut(s) 857, 1313
BpmI CTGGAG 1 cut(s) 1070
BpuEI CTTGAG 6 cut(s) 347, 758, 1025, 1139, 1202, 1268
Bsa29I ATCGAT 1 cut(s) 396
BsaI GGTCTC 1 cut(s) 1178
BsaJI CCNNGG 2 cut(s) 362, 1188
BsaWI WCCGGW 1 cut(s) 1143
BsaXI ACNNNNNCTCC 2 cut(s) 41, 71
Bsc4I CCNNNNNNNGG 7 cut(s) 99, 221, 797, 862, 1216, 1232, 1373
Bse21I CCTNAGG 2 cut(s) 861, 1008
Bse3DI GCAATG 1 cut(s) 1148
BseAI TCCGGA 1 cut(s) 1143
BseBI CCWGG 2 cut(s) 1049, 1494
BseCI ATCGAT 1 cut(s) 396
BseDI CCNNGG 2 cut(s) 362, 1188
BseGI GGATG 1 cut(s) 372
BseLI CCNNNNNNNGG 7 cut(s) 99, 221, 797, 862, 1216, 1232, 1373
BseMI GCAATG 1 cut(s) 1148
BseMII CTCAG 3 cut(s) 618, 875, 999
BseXI GCAGC 6 cut(s) 156, 340, 702, 741, 1190, 1398
BseYI CCCAGC 2 cut(s) 92, 1382
BsgI GTGCAG 2 cut(s) 201, 339
Bsh1236I CGCG 1 cut(s) 834
BshFI GGCC 1 cut(s) 1497
BshVI ATCGAT 1 cut(s) 396
BsiHKAI GWGCWC 2 cut(s) 19, 847
BsiHKCI CYCGRG 1 cut(s) 890
BsiSI CCGG 1 cut(s) 1144
BslFI GGGAC 2 cut(s) 108, 289
BslI CCNNNNNNNGG 7 cut(s) 99, 221, 797, 862, 1216, 1232, 1373
BsmAI GTCTC 4 cut(s) 1178, 1293, 1358, 1438
BsmFI GGGAC 2 cut(s) 108, 289
BsmI GAATGC 1 cut(s) 1551
BsnI GGCC 1 cut(s) 1497
Bso31I GGTCTC 1 cut(s) 1178
BsoBI CYCGRG 1 cut(s) 890
Bsp1286I GDGCHC 2 cut(s) 19, 847
Bsp13I TCCGGA 1 cut(s) 1143
Bsp143I GATC 5 cut(s) 393, 655, 998, 1567, 1600
BspACI CCGC 1 cut(s) 832
BspANI GGCC 1 cut(s) 1497
BspCNI CTCAG 3 cut(s) 619, 874, 1000
BspDI ATCGAT 1 cut(s) 396
BspEI TCCGGA 1 cut(s) 1143
BspFNI CGCG 1 cut(s) 834
BspLI GGNNCC 1 cut(s) 234
BspMAI CTGCAG 2 cut(s) 188, 759
BspPI GGATC 2 cut(s) 1006, 1595
BspTI CTTAAG 1 cut(s) 1390
BspTNI GGTCTC 1 cut(s) 1178
BsrDI GCAATG 1 cut(s) 1148
BssECI CCNNGG 2 cut(s) 362, 1188
BssMI GATC 5 cut(s) 393, 655, 998, 1567, 1600
BssT1I CCWWGG 1 cut(s) 1188
Bst2UI CCWGG 2 cut(s) 1049, 1494
Bst4CI ACNGT 2 cut(s) 507, 1064
Bst6I CTCTTC 1 cut(s) 1530
BstAFI CTTAAG 1 cut(s) 1390
BstAPI GCANNNNNTGC 1 cut(s) 1378
BstC8I GCNNGC 1 cut(s) 254
BstDEI CTNAG 4 cut(s) 377, 627, 861, 1008
BstENI CCTNNNNNAGG 2 cut(s) 860, 1214
BstF5I GGATG 1 cut(s) 372
BstFNI CGCG 1 cut(s) 834
BstHHI GCGC 1 cut(s) 174
BstKTI GATC 5 cut(s) 396, 658, 1001, 1570, 1603
BstMAI GTCTC 4 cut(s) 1178, 1293, 1358, 1438
BstMBI GATC 5 cut(s) 393, 655, 998, 1567, 1600
BstMWI GCNNNNNNNGC 1 cut(s) 1378
BstNI CCWGG 2 cut(s) 1049, 1494
BstNSI RCATGY 1 cut(s) 476
BstSCI CCNGG 2 cut(s) 1047, 1492
BstSFI CTRYAG 4 cut(s) 184, 237, 755, 1622
BstUI CGCG 1 cut(s) 834
BstV1I GCAGC 6 cut(s) 156, 340, 702, 741, 1190, 1398
BstV2I GAAGAC 2 cut(s) 857, 1313
BstX2I RGATCY 2 cut(s) 1567, 1600
BstYI RGATCY 2 cut(s) 1567, 1600
Bsu15I ATCGAT 1 cut(s) 396
Bsu36I CCTNAGG 2 cut(s) 861, 1008
BsuI GTATCC 1 cut(s) 604
BsuRI GGCC 1 cut(s) 1497
BsuTUI ATCGAT 1 cut(s) 396
BtsCI GGATG 1 cut(s) 372
BtsI GCAGTG 1 cut(s) 1001
BtsIMutI CAGTG 3 cut(s) 440, 1001, 1445
Cac8I GCNNGC 1 cut(s) 254
CaiI CAGNNNCTG 1 cut(s) 1378
CfoI GCGC 1 cut(s) 174
ClaI ATCGAT 1 cut(s) 396
CseI GACGC 2 cut(s) 809, 1103
Csp6I GTAC 4 cut(s) 388, 1045, 1591, 1612
CviAII CATG 4 cut(s) 37, 146, 473, 1075
CviQI GTAC 4 cut(s) 388, 1045, 1591, 1612
DdeI CTNAG 4 cut(s) 377, 627, 861, 1008
DpnI GATC 5 cut(s) 395, 657, 1000, 1569, 1602
DpnII GATC 5 cut(s) 393, 655, 998, 1567, 1600
Eam1104I CTCTTC 1 cut(s) 1530
EarI CTCTTC 1 cut(s) 1530
Eco130I CCWWGG 1 cut(s) 1188
Eco31I GGTCTC 1 cut(s) 1178
Eco57I CTGAAG 6 cut(s) 510, 836, 869, 1199, 1307, 1520
Eco81I CCTNAGG 2 cut(s) 861, 1008
Eco88I CYCGRG 1 cut(s) 890
EcoNI CCTNNNNNAGG 2 cut(s) 860, 1214
EcoRI GAATTC 1 cut(s) 242
EcoRII CCWGG 2 cut(s) 1047, 1492
EcoT14I CCWWGG 1 cut(s) 1188
ErhI CCWWGG 1 cut(s) 1188
FaeI CATG 4 cut(s) 40, 149, 476, 1078
FaqI GGGAC 2 cut(s) 108, 289
FatI CATG 4 cut(s) 36, 145, 472, 1074
FauNDI CATATG 1 cut(s) 969
FbaI TGATCA 1 cut(s) 655
Fnu4HI GCNGC 6 cut(s) 170, 354, 716, 755, 1204, 1387
FokI GGATG 1 cut(s) 379
Fsp4HI GCNGC 6 cut(s) 170, 354, 716, 755, 1204, 1387
FspBI CTAG 7 cut(s) 161, 249, 581, 702, 1350, 1466, 1598
FspI TGCGCA 1 cut(s) 173
GlaI GCGC 1 cut(s) 173
GluI GCNGC 6 cut(s) 170, 354, 716, 755, 1204, 1387
GsaI CCCAGC 2 cut(s) 96, 1386
GsuI CTGGAG 1 cut(s) 1070
HaeIII GGCC 1 cut(s) 1497
HapII CCGG 1 cut(s) 1144
HgaI GACGC 2 cut(s) 809, 1103
HhaI GCGC 1 cut(s) 174
Hin1II CATG 4 cut(s) 40, 149, 476, 1078
Hin6I GCGC 1 cut(s) 172
HinP1I GCGC 1 cut(s) 172
HincII GTYRAC 1 cut(s) 132
HindII GTYRAC 1 cut(s) 132
HindIII AAGCTT 1 cut(s) 1421
HpaI GTTAAC 1 cut(s) 132
HpaII CCGG 1 cut(s) 1144
HphI GGTGA 2 cut(s) 1103, 1468
Hpy166II GTNNAC 2 cut(s) 132, 141
Hpy188I TCNGA 6 cut(s) 34, 363, 849, 1270, 1326, 1585
Hpy8I GTNNAC 2 cut(s) 132, 141
HpyCH4III ACNGT 2 cut(s) 507, 1064
HpyF10VI GCNNNNNNNGC 1 cut(s) 1378
HpyF3I CTNAG 4 cut(s) 377, 627, 861, 1008
Hsp92II CATG 4 cut(s) 40, 149, 476, 1078
HspAI GCGC 1 cut(s) 172
Kpn2I TCCGGA 1 cut(s) 1143
Ksp22I TGATCA 1 cut(s) 655
KspAI GTTAAC 1 cut(s) 132
Kzo9I GATC 5 cut(s) 393, 655, 998, 1567, 1600
LmnI GCTCC 3 cut(s) 103, 666, 865
Lsp1109I GCAGC 6 cut(s) 156, 340, 702, 741, 1190, 1398
LweI GCATC 3 cut(s) 183, 490, 1008
MaeI CTAG 7 cut(s) 161, 249, 581, 702, 1350, 1466, 1598
MaeIII GTNAC 3 cut(s) 1095, 1258, 1405
MalI GATC 5 cut(s) 395, 657, 1000, 1569, 1602
MboI GATC 5 cut(s) 393, 655, 998, 1567, 1600
MboII GAAGA 9 cut(s) 80, 436, 533, 662, 862, 950, 1205, 1313, 1517
MflI RGATCY 2 cut(s) 1567, 1600
MhlI GDGCHC 2 cut(s) 19, 847
MlyI GAGTC 2 cut(s) 538, 1030
MmeI TCCRAC 3 cut(s) 526, 556, 1311
MroI TCCGGA 1 cut(s) 1143
MroXI GAANNNNTTC 2 cut(s) 294, 786
MseI TTAA 9 cut(s) 81, 131, 477, 675, 723, 1391, 1425, 1538, 1547
MspCI CTTAAG 1 cut(s) 1390
MspI CCGG 1 cut(s) 1144
MspR9I CCNGG 2 cut(s) 1049, 1494
Mva1269I GAATGC 1 cut(s) 1551
MvaI CCWGG 2 cut(s) 1049, 1494
MvnI CGCG 1 cut(s) 834
MwoI GCNNNNNNNGC 1 cut(s) 1378
NdeI CATATG 1 cut(s) 969
NdeII GATC 5 cut(s) 393, 655, 998, 1567, 1600
NlaIII CATG 4 cut(s) 40, 149, 476, 1078
NlaIV GGNNCC 1 cut(s) 234
NmuCI GTSAC 1 cut(s) 1258
NsbI TGCGCA 1 cut(s) 173
NspI RCATGY 1 cut(s) 476
PaeR7I CTCGAG 1 cut(s) 890
PciI ACATGT 1 cut(s) 472
PcsI WCGNNNNNNNCGW 1 cut(s) 888
PctI GAATGC 1 cut(s) 1551
PdmI GAANNNNTTC 2 cut(s) 294, 786
PfeI GAWTC 8 cut(s) 23, 211, 398, 1177, 1279, 1560, 1574, 1618
PflMI CCANNNNNTGG 1 cut(s) 1232
PkrI GCNGC 6 cut(s) 171, 355, 717, 756, 1205, 1388
PleI GAGTC 2 cut(s) 537, 1030
PpsI GAGTC 2 cut(s) 537, 1030
PscI ACATGT 1 cut(s) 472
PsiI TTATAA 1 cut(s) 909
Psp6I CCWGG 2 cut(s) 1047, 1492
PspFI CCCAGC 2 cut(s) 92, 1382
PspGI CCWGG 2 cut(s) 1047, 1492
PspN4I GGNNCC 1 cut(s) 234
PstI CTGCAG 2 cut(s) 188, 759
PstNI CAGNNNCTG 1 cut(s) 1378
PsuI RGATCY 2 cut(s) 1567, 1600
RsaI GTAC 4 cut(s) 389, 1046, 1592, 1613
RsaNI GTAC 4 cut(s) 388, 1045, 1591, 1612
SaqAI TTAA 9 cut(s) 81, 131, 477, 675, 723, 1391, 1425, 1538, 1547
SatI GCNGC 6 cut(s) 170, 354, 716, 755, 1204, 1387
Sau3AI GATC 5 cut(s) 393, 655, 998, 1567, 1600
ScaI AGTACT 1 cut(s) 1592
SchI GAGTC 2 cut(s) 538, 1030
ScrFI CCNGG 2 cut(s) 1049, 1494
SduI GDGCHC 2 cut(s) 19, 847
SfaNI GCATC 3 cut(s) 183, 490, 1008
SfcI CTRYAG 4 cut(s) 184, 237, 755, 1622
Sfr274I CTCGAG 1 cut(s) 890
SlaI CTCGAG 1 cut(s) 890
SmlI CTYRAG 8 cut(s) 326, 737, 890, 1040, 1118, 1181, 1283, 1390
SmoI CTYRAG 8 cut(s) 326, 737, 890, 1040, 1118, 1181, 1283, 1390
SsiI CCGC 1 cut(s) 832
SspI AATATT 3 cut(s) 557, 680, 695
SspMI CTAG 7 cut(s) 161, 249, 581, 702, 1350, 1466, 1598
StyD4I CCNGG 2 cut(s) 1047, 1492
StyI CCWWGG 1 cut(s) 1188
TaaI ACNGT 2 cut(s) 507, 1064
TaqI TCGA 3 cut(s) 13, 396, 891
TaqII GACCGA 1 cut(s) 585
TatI WGTACW 1 cut(s) 1590
TfiI GAWTC 8 cut(s) 23, 211, 398, 1177, 1279, 1560, 1574, 1618
Tru1I TTAA 9 cut(s) 81, 131, 477, 675, 723, 1391, 1425, 1538, 1547
Tru9I TTAA 9 cut(s) 81, 131, 477, 675, 723, 1391, 1425, 1538, 1547
TscAI CASTG 3 cut(s) 447, 1008, 1445
TseFI GTSAC 1 cut(s) 1258
TseI GCWGC 6 cut(s) 169, 353, 715, 754, 1203, 1386
Tsp45I GTSAC 1 cut(s) 1258
TspDTI ATGAA 6 cut(s) 53, 87, 663, 725, 986, 1295
TspGWI ACGGA 1 cut(s) 436
TspRI CASTG 3 cut(s) 447, 1008, 1445
Van91I CCANNNNNTGG 1 cut(s) 1232
Vha464I CTTAAG 1 cut(s) 1390
XagI CCTNNNNNAGG 2 cut(s) 860, 1214
XapI RAATTY 6 cut(s) 226, 242, 431, 974, 990, 1298
XbaI TCTAGA 2 cut(s) 160, 1465
XceI RCATGY 1 cut(s) 476
XhoI CTCGAG 1 cut(s) 890
XmnI GAANNNNTTC 2 cut(s) 294, 786
XspI CTAG 7 cut(s) 161, 249, 581, 702, 1350, 1466, 1598
ZrmI AGTACT 1 cut(s) 1592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.