disease resistance
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g01950 FvH4_7g01950 FvH4_7g01950 FvH4_7g01950 FvH4_7g01950 |
| malus_domestica | MD07G1025200.v1.1 |
| prunus_persica | Prupe.2G025700_v2.0.a1 |
| pyrus_communis | pycom07g01950 |
| rosa_chinensis | RchiOBHm_Chr1g0318941 |
| rosa_multiflora | Rmu_sc0000504.1_g000032 Rmu_sc0001304.1_g000001 Rmu_sc0001304.1_g000002 Rmu_sc0001304.1_g000003 Rmu_sc0006228.1_g000001 Rmu_sc0009454.1_g000007 |
| rosa_roxburghii | Rroxscaffold_4G00328760 Rroxscaffold_4G00328790 Rroxscaffold_4G00328810 |
| rosa_rugosa | Rorug01G0025200 Rorug01G0025500 Rorug01G0025600 |
| rosa_samantha | Rh1AG037200 Rh1AG037300 Rh1AG037400 Rh1BG033400 Rh1BG033800 Rh1CG036600 Rh1DG033700 Rh1DG034000 |
| rosa_wichuraiana | Rw0G005440 Rw0G015080 Rw1G002890 Rw1G002900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 909 |
| Acc16I | TGCGCA | 1 cut(s) | 173 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1232 |
| AccII | CGCG | 1 cut(s) | 834 |
| AccIII | TCCGGA | 1 cut(s) | 1143 |
| AciI | CCGC | 1 cut(s) | 832 |
| AclWI | GGATC | 2 cut(s) | 1006, 1595 |
| AcsI | RAATTY | 6 cut(s) | 226, 242, 431, 974, 990, 1298 |
| AcuI | CTGAAG | 6 cut(s) | 510, 836, 869, 1199, 1307, 1520 |
| AfaI | GTAC | 4 cut(s) | 389, 1046, 1592, 1613 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 99, 221, 797, 862, 1216, 1232, 1373 |
| AflII | CTTAAG | 1 cut(s) | 1390 |
| AflIII | ACRYGT | 1 cut(s) | 472 |
| AjnI | CCWGG | 2 cut(s) | 1047, 1492 |
| Alw21I | GWGCWC | 2 cut(s) | 19, 847 |
| Alw26I | GTCTC | 4 cut(s) | 1178, 1293, 1358, 1438 |
| AlwI | GGATC | 2 cut(s) | 1006, 1595 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1378 |
| Ama87I | CYCGRG | 1 cut(s) | 890 |
| Aor13HI | TCCGGA | 1 cut(s) | 1143 |
| AoxI | GGCC | 1 cut(s) | 1495 |
| ApeKI | GCWGC | 6 cut(s) | 169, 353, 715, 754, 1203, 1386 |
| ApoI | RAATTY | 6 cut(s) | 226, 242, 431, 974, 990, 1298 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 294, 786 |
| AspLEI | GCGC | 1 cut(s) | 174 |
| AsuHPI | GGTGA | 2 cut(s) | 1103, 1468 |
| AvaI | CYCGRG | 1 cut(s) | 890 |
| AxyI | CCTNAGG | 2 cut(s) | 861, 1008 |
| BbsI | GAAGAC | 2 cut(s) | 857, 1313 |
| Bbv12I | GWGCWC | 2 cut(s) | 19, 847 |
| BbvI | GCAGC | 6 cut(s) | 156, 340, 702, 741, 1190, 1398 |
| BccI | CCATC | 4 cut(s) | 329, 361, 421, 961 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 386, 420, 824, 858 |
| BciT130I | CCWGG | 2 cut(s) | 1049, 1494 |
| BciVI | GTATCC | 1 cut(s) | 604 |
| BclI | TGATCA | 1 cut(s) | 655 |
| BcoDI | GTCTC | 4 cut(s) | 1178, 1293, 1358, 1438 |
| BfaI | CTAG | 7 cut(s) | 161, 249, 581, 702, 1350, 1466, 1598 |
| BfmI | CTRYAG | 4 cut(s) | 184, 237, 755, 1622 |
| BfrI | CTTAAG | 1 cut(s) | 1390 |
| BfuI | GTATCC | 1 cut(s) | 604 |
| BglII | AGATCT | 1 cut(s) | 1567 |
| BisI | GCNGC | 6 cut(s) | 170, 354, 716, 755, 1204, 1387 |
| BlsI | GCNGC | 6 cut(s) | 171, 355, 717, 756, 1205, 1388 |
| BmcAI | AGTACT | 1 cut(s) | 1592 |
| Bme1390I | CCNGG | 2 cut(s) | 1049, 1494 |
| BmeT110I | CYCGRG | 1 cut(s) | 890 |
| BmiI | GGNNCC | 1 cut(s) | 234 |
| BmrFI | CCNGG | 2 cut(s) | 1049, 1494 |
| BmsI | GCATC | 3 cut(s) | 183, 490, 1008 |
| BpiI | GAAGAC | 2 cut(s) | 857, 1313 |
| BpmI | CTGGAG | 1 cut(s) | 1070 |
| BpuEI | CTTGAG | 6 cut(s) | 347, 758, 1025, 1139, 1202, 1268 |
| Bsa29I | ATCGAT | 1 cut(s) | 396 |
| BsaI | GGTCTC | 1 cut(s) | 1178 |
| BsaJI | CCNNGG | 2 cut(s) | 362, 1188 |
| BsaWI | WCCGGW | 1 cut(s) | 1143 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 41, 71 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 99, 221, 797, 862, 1216, 1232, 1373 |
| Bse21I | CCTNAGG | 2 cut(s) | 861, 1008 |
| Bse3DI | GCAATG | 1 cut(s) | 1148 |
| BseAI | TCCGGA | 1 cut(s) | 1143 |
| BseBI | CCWGG | 2 cut(s) | 1049, 1494 |
| BseCI | ATCGAT | 1 cut(s) | 396 |
| BseDI | CCNNGG | 2 cut(s) | 362, 1188 |
| BseGI | GGATG | 1 cut(s) | 372 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 99, 221, 797, 862, 1216, 1232, 1373 |
| BseMI | GCAATG | 1 cut(s) | 1148 |
| BseMII | CTCAG | 3 cut(s) | 618, 875, 999 |
| BseXI | GCAGC | 6 cut(s) | 156, 340, 702, 741, 1190, 1398 |
| BseYI | CCCAGC | 2 cut(s) | 92, 1382 |
| BsgI | GTGCAG | 2 cut(s) | 201, 339 |
| Bsh1236I | CGCG | 1 cut(s) | 834 |
| BshFI | GGCC | 1 cut(s) | 1497 |
| BshVI | ATCGAT | 1 cut(s) | 396 |
| BsiHKAI | GWGCWC | 2 cut(s) | 19, 847 |
| BsiHKCI | CYCGRG | 1 cut(s) | 890 |
| BsiSI | CCGG | 1 cut(s) | 1144 |
| BslFI | GGGAC | 2 cut(s) | 108, 289 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 99, 221, 797, 862, 1216, 1232, 1373 |
| BsmAI | GTCTC | 4 cut(s) | 1178, 1293, 1358, 1438 |
| BsmFI | GGGAC | 2 cut(s) | 108, 289 |
| BsmI | GAATGC | 1 cut(s) | 1551 |
| BsnI | GGCC | 1 cut(s) | 1497 |
| Bso31I | GGTCTC | 1 cut(s) | 1178 |
| BsoBI | CYCGRG | 1 cut(s) | 890 |
| Bsp1286I | GDGCHC | 2 cut(s) | 19, 847 |
| Bsp13I | TCCGGA | 1 cut(s) | 1143 |
| Bsp143I | GATC | 5 cut(s) | 393, 655, 998, 1567, 1600 |
| BspACI | CCGC | 1 cut(s) | 832 |
| BspANI | GGCC | 1 cut(s) | 1497 |
| BspCNI | CTCAG | 3 cut(s) | 619, 874, 1000 |
| BspDI | ATCGAT | 1 cut(s) | 396 |
| BspEI | TCCGGA | 1 cut(s) | 1143 |
| BspFNI | CGCG | 1 cut(s) | 834 |
| BspLI | GGNNCC | 1 cut(s) | 234 |
| BspMAI | CTGCAG | 2 cut(s) | 188, 759 |
| BspPI | GGATC | 2 cut(s) | 1006, 1595 |
| BspTI | CTTAAG | 1 cut(s) | 1390 |
| BspTNI | GGTCTC | 1 cut(s) | 1178 |
| BsrDI | GCAATG | 1 cut(s) | 1148 |
| BssECI | CCNNGG | 2 cut(s) | 362, 1188 |
| BssMI | GATC | 5 cut(s) | 393, 655, 998, 1567, 1600 |
| BssT1I | CCWWGG | 1 cut(s) | 1188 |
| Bst2UI | CCWGG | 2 cut(s) | 1049, 1494 |
| Bst4CI | ACNGT | 2 cut(s) | 507, 1064 |
| Bst6I | CTCTTC | 1 cut(s) | 1530 |
| BstAFI | CTTAAG | 1 cut(s) | 1390 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1378 |
| BstC8I | GCNNGC | 1 cut(s) | 254 |
| BstDEI | CTNAG | 4 cut(s) | 377, 627, 861, 1008 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 860, 1214 |
| BstF5I | GGATG | 1 cut(s) | 372 |
| BstFNI | CGCG | 1 cut(s) | 834 |
| BstHHI | GCGC | 1 cut(s) | 174 |
| BstKTI | GATC | 5 cut(s) | 396, 658, 1001, 1570, 1603 |
| BstMAI | GTCTC | 4 cut(s) | 1178, 1293, 1358, 1438 |
| BstMBI | GATC | 5 cut(s) | 393, 655, 998, 1567, 1600 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1378 |
| BstNI | CCWGG | 2 cut(s) | 1049, 1494 |
| BstNSI | RCATGY | 1 cut(s) | 476 |
| BstSCI | CCNGG | 2 cut(s) | 1047, 1492 |
| BstSFI | CTRYAG | 4 cut(s) | 184, 237, 755, 1622 |
| BstUI | CGCG | 1 cut(s) | 834 |
| BstV1I | GCAGC | 6 cut(s) | 156, 340, 702, 741, 1190, 1398 |
| BstV2I | GAAGAC | 2 cut(s) | 857, 1313 |
| BstX2I | RGATCY | 2 cut(s) | 1567, 1600 |
| BstYI | RGATCY | 2 cut(s) | 1567, 1600 |
| Bsu15I | ATCGAT | 1 cut(s) | 396 |
| Bsu36I | CCTNAGG | 2 cut(s) | 861, 1008 |
| BsuI | GTATCC | 1 cut(s) | 604 |
| BsuRI | GGCC | 1 cut(s) | 1497 |
| BsuTUI | ATCGAT | 1 cut(s) | 396 |
| BtsCI | GGATG | 1 cut(s) | 372 |
| BtsI | GCAGTG | 1 cut(s) | 1001 |
| BtsIMutI | CAGTG | 3 cut(s) | 440, 1001, 1445 |
| Cac8I | GCNNGC | 1 cut(s) | 254 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1378 |
| CfoI | GCGC | 1 cut(s) | 174 |
| ClaI | ATCGAT | 1 cut(s) | 396 |
| CseI | GACGC | 2 cut(s) | 809, 1103 |
| Csp6I | GTAC | 4 cut(s) | 388, 1045, 1591, 1612 |
| CviAII | CATG | 4 cut(s) | 37, 146, 473, 1075 |
| CviQI | GTAC | 4 cut(s) | 388, 1045, 1591, 1612 |
| DdeI | CTNAG | 4 cut(s) | 377, 627, 861, 1008 |
| DpnI | GATC | 5 cut(s) | 395, 657, 1000, 1569, 1602 |
| DpnII | GATC | 5 cut(s) | 393, 655, 998, 1567, 1600 |
| Eam1104I | CTCTTC | 1 cut(s) | 1530 |
| EarI | CTCTTC | 1 cut(s) | 1530 |
| Eco130I | CCWWGG | 1 cut(s) | 1188 |
| Eco31I | GGTCTC | 1 cut(s) | 1178 |
| Eco57I | CTGAAG | 6 cut(s) | 510, 836, 869, 1199, 1307, 1520 |
| Eco81I | CCTNAGG | 2 cut(s) | 861, 1008 |
| Eco88I | CYCGRG | 1 cut(s) | 890 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 860, 1214 |
| EcoRI | GAATTC | 1 cut(s) | 242 |
| EcoRII | CCWGG | 2 cut(s) | 1047, 1492 |
| EcoT14I | CCWWGG | 1 cut(s) | 1188 |
| ErhI | CCWWGG | 1 cut(s) | 1188 |
| FaeI | CATG | 4 cut(s) | 40, 149, 476, 1078 |
| FaqI | GGGAC | 2 cut(s) | 108, 289 |
| FatI | CATG | 4 cut(s) | 36, 145, 472, 1074 |
| FauNDI | CATATG | 1 cut(s) | 969 |
| FbaI | TGATCA | 1 cut(s) | 655 |
| Fnu4HI | GCNGC | 6 cut(s) | 170, 354, 716, 755, 1204, 1387 |
| FokI | GGATG | 1 cut(s) | 379 |
| Fsp4HI | GCNGC | 6 cut(s) | 170, 354, 716, 755, 1204, 1387 |
| FspBI | CTAG | 7 cut(s) | 161, 249, 581, 702, 1350, 1466, 1598 |
| FspI | TGCGCA | 1 cut(s) | 173 |
| GlaI | GCGC | 1 cut(s) | 173 |
| GluI | GCNGC | 6 cut(s) | 170, 354, 716, 755, 1204, 1387 |
| GsaI | CCCAGC | 2 cut(s) | 96, 1386 |
| GsuI | CTGGAG | 1 cut(s) | 1070 |
| HaeIII | GGCC | 1 cut(s) | 1497 |
| HapII | CCGG | 1 cut(s) | 1144 |
| HgaI | GACGC | 2 cut(s) | 809, 1103 |
| HhaI | GCGC | 1 cut(s) | 174 |
| Hin1II | CATG | 4 cut(s) | 40, 149, 476, 1078 |
| Hin6I | GCGC | 1 cut(s) | 172 |
| HinP1I | GCGC | 1 cut(s) | 172 |
| HincII | GTYRAC | 1 cut(s) | 132 |
| HindII | GTYRAC | 1 cut(s) | 132 |
| HindIII | AAGCTT | 1 cut(s) | 1421 |
| HpaI | GTTAAC | 1 cut(s) | 132 |
| HpaII | CCGG | 1 cut(s) | 1144 |
| HphI | GGTGA | 2 cut(s) | 1103, 1468 |
| Hpy166II | GTNNAC | 2 cut(s) | 132, 141 |
| Hpy188I | TCNGA | 6 cut(s) | 34, 363, 849, 1270, 1326, 1585 |
| Hpy8I | GTNNAC | 2 cut(s) | 132, 141 |
| HpyCH4III | ACNGT | 2 cut(s) | 507, 1064 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1378 |
| HpyF3I | CTNAG | 4 cut(s) | 377, 627, 861, 1008 |
| Hsp92II | CATG | 4 cut(s) | 40, 149, 476, 1078 |
| HspAI | GCGC | 1 cut(s) | 172 |
| Kpn2I | TCCGGA | 1 cut(s) | 1143 |
| Ksp22I | TGATCA | 1 cut(s) | 655 |
| KspAI | GTTAAC | 1 cut(s) | 132 |
| Kzo9I | GATC | 5 cut(s) | 393, 655, 998, 1567, 1600 |
| LmnI | GCTCC | 3 cut(s) | 103, 666, 865 |
| Lsp1109I | GCAGC | 6 cut(s) | 156, 340, 702, 741, 1190, 1398 |
| LweI | GCATC | 3 cut(s) | 183, 490, 1008 |
| MaeI | CTAG | 7 cut(s) | 161, 249, 581, 702, 1350, 1466, 1598 |
| MaeIII | GTNAC | 3 cut(s) | 1095, 1258, 1405 |
| MalI | GATC | 5 cut(s) | 395, 657, 1000, 1569, 1602 |
| MboI | GATC | 5 cut(s) | 393, 655, 998, 1567, 1600 |
| MboII | GAAGA | 9 cut(s) | 80, 436, 533, 662, 862, 950, 1205, 1313, 1517 |
| MflI | RGATCY | 2 cut(s) | 1567, 1600 |
| MhlI | GDGCHC | 2 cut(s) | 19, 847 |
| MlyI | GAGTC | 2 cut(s) | 538, 1030 |
| MmeI | TCCRAC | 3 cut(s) | 526, 556, 1311 |
| MroI | TCCGGA | 1 cut(s) | 1143 |
| MroXI | GAANNNNTTC | 2 cut(s) | 294, 786 |
| MseI | TTAA | 9 cut(s) | 81, 131, 477, 675, 723, 1391, 1425, 1538, 1547 |
| MspCI | CTTAAG | 1 cut(s) | 1390 |
| MspI | CCGG | 1 cut(s) | 1144 |
| MspR9I | CCNGG | 2 cut(s) | 1049, 1494 |
| Mva1269I | GAATGC | 1 cut(s) | 1551 |
| MvaI | CCWGG | 2 cut(s) | 1049, 1494 |
| MvnI | CGCG | 1 cut(s) | 834 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1378 |
| NdeI | CATATG | 1 cut(s) | 969 |
| NdeII | GATC | 5 cut(s) | 393, 655, 998, 1567, 1600 |
| NlaIII | CATG | 4 cut(s) | 40, 149, 476, 1078 |
| NlaIV | GGNNCC | 1 cut(s) | 234 |
| NmuCI | GTSAC | 1 cut(s) | 1258 |
| NsbI | TGCGCA | 1 cut(s) | 173 |
| NspI | RCATGY | 1 cut(s) | 476 |
| PaeR7I | CTCGAG | 1 cut(s) | 890 |
| PciI | ACATGT | 1 cut(s) | 472 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 888 |
| PctI | GAATGC | 1 cut(s) | 1551 |
| PdmI | GAANNNNTTC | 2 cut(s) | 294, 786 |
| PfeI | GAWTC | 8 cut(s) | 23, 211, 398, 1177, 1279, 1560, 1574, 1618 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1232 |
| PkrI | GCNGC | 6 cut(s) | 171, 355, 717, 756, 1205, 1388 |
| PleI | GAGTC | 2 cut(s) | 537, 1030 |
| PpsI | GAGTC | 2 cut(s) | 537, 1030 |
| PscI | ACATGT | 1 cut(s) | 472 |
| PsiI | TTATAA | 1 cut(s) | 909 |
| Psp6I | CCWGG | 2 cut(s) | 1047, 1492 |
| PspFI | CCCAGC | 2 cut(s) | 92, 1382 |
| PspGI | CCWGG | 2 cut(s) | 1047, 1492 |
| PspN4I | GGNNCC | 1 cut(s) | 234 |
| PstI | CTGCAG | 2 cut(s) | 188, 759 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1378 |
| PsuI | RGATCY | 2 cut(s) | 1567, 1600 |
| RsaI | GTAC | 4 cut(s) | 389, 1046, 1592, 1613 |
| RsaNI | GTAC | 4 cut(s) | 388, 1045, 1591, 1612 |
| SaqAI | TTAA | 9 cut(s) | 81, 131, 477, 675, 723, 1391, 1425, 1538, 1547 |
| SatI | GCNGC | 6 cut(s) | 170, 354, 716, 755, 1204, 1387 |
| Sau3AI | GATC | 5 cut(s) | 393, 655, 998, 1567, 1600 |
| ScaI | AGTACT | 1 cut(s) | 1592 |
| SchI | GAGTC | 2 cut(s) | 538, 1030 |
| ScrFI | CCNGG | 2 cut(s) | 1049, 1494 |
| SduI | GDGCHC | 2 cut(s) | 19, 847 |
| SfaNI | GCATC | 3 cut(s) | 183, 490, 1008 |
| SfcI | CTRYAG | 4 cut(s) | 184, 237, 755, 1622 |
| Sfr274I | CTCGAG | 1 cut(s) | 890 |
| SlaI | CTCGAG | 1 cut(s) | 890 |
| SmlI | CTYRAG | 8 cut(s) | 326, 737, 890, 1040, 1118, 1181, 1283, 1390 |
| SmoI | CTYRAG | 8 cut(s) | 326, 737, 890, 1040, 1118, 1181, 1283, 1390 |
| SsiI | CCGC | 1 cut(s) | 832 |
| SspI | AATATT | 3 cut(s) | 557, 680, 695 |
| SspMI | CTAG | 7 cut(s) | 161, 249, 581, 702, 1350, 1466, 1598 |
| StyD4I | CCNGG | 2 cut(s) | 1047, 1492 |
| StyI | CCWWGG | 1 cut(s) | 1188 |
| TaaI | ACNGT | 2 cut(s) | 507, 1064 |
| TaqI | TCGA | 3 cut(s) | 13, 396, 891 |
| TaqII | GACCGA | 1 cut(s) | 585 |
| TatI | WGTACW | 1 cut(s) | 1590 |
| TfiI | GAWTC | 8 cut(s) | 23, 211, 398, 1177, 1279, 1560, 1574, 1618 |
| Tru1I | TTAA | 9 cut(s) | 81, 131, 477, 675, 723, 1391, 1425, 1538, 1547 |
| Tru9I | TTAA | 9 cut(s) | 81, 131, 477, 675, 723, 1391, 1425, 1538, 1547 |
| TscAI | CASTG | 3 cut(s) | 447, 1008, 1445 |
| TseFI | GTSAC | 1 cut(s) | 1258 |
| TseI | GCWGC | 6 cut(s) | 169, 353, 715, 754, 1203, 1386 |
| Tsp45I | GTSAC | 1 cut(s) | 1258 |
| TspDTI | ATGAA | 6 cut(s) | 53, 87, 663, 725, 986, 1295 |
| TspGWI | ACGGA | 1 cut(s) | 436 |
| TspRI | CASTG | 3 cut(s) | 447, 1008, 1445 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1232 |
| Vha464I | CTTAAG | 1 cut(s) | 1390 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 860, 1214 |
| XapI | RAATTY | 6 cut(s) | 226, 242, 431, 974, 990, 1298 |
| XbaI | TCTAGA | 2 cut(s) | 160, 1465 |
| XceI | RCATGY | 1 cut(s) | 476 |
| XhoI | CTCGAG | 1 cut(s) | 890 |
| XmnI | GAANNNNTTC | 2 cut(s) | 294, 786 |
| XspI | CTAG | 7 cut(s) | 161, 249, 581, 702, 1350, 1466, 1598 |
| ZrmI | AGTACT | 1 cut(s) | 1592 |