Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001304.1

Orthogroup ID

OG0004242

Physical Location & Seq

Genomic Coordinates Reverse (-)

5564 .. 6559

Gene Structure 996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001304.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

atgtcattgatttcttccttaagtggaaaatcgatgattccatgccaggacatattggatgacatcgccaatgatgctctcgaatcacaaaacagcaaacctgaggtatggaattctaagatcaaagaagggatagactttaagatgaaagacattgctaatactcttaatccctttagggaacgtgtagagtcaaaaacgataaagattatagatgtattggaagagattgcaaagcagaaagatattcttcgtttgagagaagattttggcagtatagaatcaggttttgacggattgcccacgactccaatggtgggtgataaatctcatgtttatggtagagaatctgataaggaggagataattactttgctgaaatcgagtaaaaatgatcgtgaggtttctataattccaattgtaggcatgggagacaatgggaagactactcttgctcagcttgtgtataatgatgccaaagtgagtagctattttaatttgagagcatgggcttgtgtctctgatgtatttgatgtgcaaaggataacaaaaacacttgttgagtccgcgacaaaatcaagttgtagcacaaacaatttggagttacttcaagaacaactgaaaatacggttgaagaacaagaaatttctttttgttctggatgatgtctggaacgacaagtatgaaagctgggataagttaagagtccccttcacagttggtgcaccagggaataaaatcatgatcacgacacgaaacaaaacagttgcatcacttatggggactgttcctacttactgtttggaggggctttcggacagtgattgttggttattattcgaacaaattgtgtttcagaacaggaatttagatgcctatccaaagttgaaagtgattggcaagaaaatagcatacaagtgtaaagggttgccattggctgcaaaggcactaggaggtctcctgcgtgctgaaccggaactagatgagaattactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

331

Amino Acids

37.19

Weight (kDa)

6.11

Isoelectric Point (pI)

33.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004242)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01950 FvH4_7g01950 FvH4_7g01950 FvH4_7g01950 FvH4_7g01950
malus_domestica	MD07G1025200.v1.1
prunus_persica	Prupe.2G025700_v2.0.a1
pyrus_communis	pycom07g01950
rosa_chinensis	RchiOBHm_Chr1g0318941
rosa_multiflora	Rmu_sc0000504.1_g000032 Rmu_sc0001304.1_g000001 Rmu_sc0001304.1_g000002 Rmu_sc0001304.1_g000003 Rmu_sc0006228.1_g000001 Rmu_sc0009454.1_g000007
rosa_roxburghii	Rroxscaffold_4G00328760 Rroxscaffold_4G00328790 Rroxscaffold_4G00328810
rosa_rugosa	Rorug01G0025200 Rorug01G0025500 Rorug01G0025600
rosa_samantha	Rh1AG037200 Rh1AG037300 Rh1AG037400 Rh1BG033400 Rh1BG033800 Rh1CG036600 Rh1DG033700 Rh1DG034000
rosa_wichuraiana	Rw0G005440 Rw0G015080 Rw1G002890 Rw1G002900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	569
AciI	CCGC	1 cut(s)	567
AcsI	RAATTY	3 cut(s)	112, 644, 865
AfiI	CCNNNNNNNGG	2 cut(s)	317, 422
AflII	CTTAAG	1 cut(s)	19
AflIII	ACRYGT	1 cut(s)	184
AgsI	TTSAA	3 cut(s)	611, 634, 889
AjnI	CCWGG	2 cut(s)	45, 727
AluBI	AGCT	3 cut(s)	460, 489, 690
AluI	AGCT	3 cut(s)	460, 489, 690
Alw21I	GWGCWC	1 cut(s)	727
Alw26I	GTCTC	3 cut(s)	426, 523, 962
Alw44I	GTGCAC	1 cut(s)	723
ApaLI	GTGCAC	1 cut(s)	723
ApeKI	GCWGC	1 cut(s)	938
ApoI	RAATTY	3 cut(s)	112, 644, 865
AsuHPI	GGTGA	1 cut(s)	332
AsuII	TTCGAA	1 cut(s)	840
AxyI	CCTNAGG	1 cut(s)	102
BaeGI	GKGCMC	1 cut(s)	727
BbsI	GAAGAC	1 cut(s)	449
Bbv12I	GWGCWC	1 cut(s)	727
BbvI	GCAGC	1 cut(s)	925
BciT130I	CCWGG	2 cut(s)	47, 729
BclI	TGATCA	1 cut(s)	744
BcoDI	GTCTC	3 cut(s)	426, 523, 962
BfaI	CTAG	3 cut(s)	950, 980, 994
BfrI	CTTAAG	1 cut(s)	19
BisI	GCNGC	1 cut(s)	939
BlpI	GCTNAGC	1 cut(s)	456
BlsI	GCNGC	1 cut(s)	940
Bme1390I	CCNGG	2 cut(s)	47, 729
BmrFI	CCNGG	2 cut(s)	47, 729
BmsI	GCATC	4 cut(s)	64, 463, 779, 862
BpiI	GAAGAC	1 cut(s)	449
Bpu1102I	GCTNAGC	1 cut(s)	456
Bpu14I	TTCGAA	1 cut(s)	840
Bsa29I	ATCGAT	1 cut(s)	32
BsaBI	GATNNNNATC	1 cut(s)	876
BsaI	GGTCTC	1 cut(s)	962
BsaJI	CCNNGG	1 cut(s)	728
BsaWI	WCCGGW	1 cut(s)	973
Bsc4I	CCNNNNNNNGG	2 cut(s)	317, 422
Bse21I	CCTNAGG	1 cut(s)	102
Bse3DI	GCAATG	1 cut(s)	153
Bse8I	GATNNNNATC	1 cut(s)	876
BseBI	CCWGG	2 cut(s)	47, 729
BseCI	ATCGAT	1 cut(s)	32
BseDI	CCNNGG	1 cut(s)	728
BseGI	GGATG	2 cut(s)	64, 667
BseJI	GATNNNNATC	1 cut(s)	876
BseLI	CCNNNNNNNGG	2 cut(s)	317, 422
BseMI	GCAATG	1 cut(s)	153
BseMII	CTCAG	2 cut(s)	93, 470
BseRI	GAGGAG	1 cut(s)	374
BseSI	GKGCMC	1 cut(s)	727
BseXI	GCAGC	1 cut(s)	925
BseYI	CCCAGC	1 cut(s)	690
Bsh1236I	CGCG	1 cut(s)	569
BshVI	ATCGAT	1 cut(s)	32
BsiHKAI	GWGCWC	1 cut(s)	727
BsiSI	CCGG	1 cut(s)	974
BslFI	GGGAC	2 cut(s)	692, 796
BslI	CCNNNNNNNGG	2 cut(s)	317, 422
BsmAI	GTCTC	3 cut(s)	426, 523, 962
BsmFI	GGGAC	2 cut(s)	692, 796
Bso31I	GGTCTC	1 cut(s)	962
Bsp119I	TTCGAA	1 cut(s)	840
Bsp1286I	GDGCHC	1 cut(s)	727
Bsp143I	GATC	3 cut(s)	120, 394, 744
Bsp1720I	GCTNAGC	1 cut(s)	456
BspACI	CCGC	1 cut(s)	567
BspCNI	CTCAG	2 cut(s)	94, 469
BspDI	ATCGAT	1 cut(s)	32
BspFNI	CGCG	1 cut(s)	569
BspHI	TCATGA	1 cut(s)	741
BspT104I	TTCGAA	1 cut(s)	840
BspTI	CTTAAG	1 cut(s)	19
BspTNI	GGTCTC	1 cut(s)	962
BsrDI	GCAATG	1 cut(s)	153
BssECI	CCNNGG	1 cut(s)	728
BssMI	GATC	3 cut(s)	120, 394, 744
Bst2UI	CCWGG	2 cut(s)	47, 729
Bst4CI	ACNGT	6 cut(s)	630, 718, 766, 787, 800, 821
Bst6I	CTCTTC	1 cut(s)	219
BstAFI	CTTAAG	1 cut(s)	19
BstBI	TTCGAA	1 cut(s)	840
BstC8I	GCNNGC	1 cut(s)	966
BstDEI	CTNAG	3 cut(s)	102, 117, 456
BstF5I	GGATG	2 cut(s)	64, 667
BstFNI	CGCG	1 cut(s)	569
BstKTI	GATC	3 cut(s)	123, 397, 747
BstMAI	GTCTC	3 cut(s)	426, 523, 962
BstMBI	GATC	3 cut(s)	120, 394, 744
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 944
BstNI	CCWGG	2 cut(s)	47, 729
BstSCI	CCNGG	2 cut(s)	45, 727
BstSLI	GKGCMC	1 cut(s)	727
BstUI	CGCG	1 cut(s)	569
BstV1I	GCAGC	1 cut(s)	925
BstV2I	GAAGAC	1 cut(s)	449
Bsu15I	ATCGAT	1 cut(s)	32
Bsu36I	CCTNAGG	1 cut(s)	102
BsuTUI	ATCGAT	1 cut(s)	32
BtgZI	GCGATG	1 cut(s)	49
BtsCI	GGATG	2 cut(s)	64, 667
BtsIMutI	CAGTG	1 cut(s)	826
Cac8I	GCNNGC	1 cut(s)	966
CciI	TCATGA	1 cut(s)	741
ClaI	ATCGAT	1 cut(s)	32
CviAII	CATG	5 cut(s)	42, 332, 427, 507, 742
CviJI	RGCY	6 cut(s)	460, 489, 512, 690, 811, 938
CviKI_1	RGCY	6 cut(s)	460, 489, 512, 690, 811, 938
DdeI	CTNAG	3 cut(s)	102, 117, 456
DpnI	GATC	3 cut(s)	122, 396, 746
DpnII	GATC	3 cut(s)	120, 394, 744
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
Eco31I	GGTCTC	1 cut(s)	962
Eco81I	CCTNAGG	1 cut(s)	102
EcoRI	GAATTC	1 cut(s)	112
EcoRII	CCWGG	2 cut(s)	45, 727
FaeI	CATG	5 cut(s)	45, 335, 430, 510, 745
FalI	AAGNNNNNCTT	2 cut(s)	234, 266
FaqI	GGGAC	2 cut(s)	692, 796
FatI	CATG	5 cut(s)	41, 331, 426, 506, 741
FbaI	TGATCA	1 cut(s)	744
Fnu4HI	GCNGC	1 cut(s)	939
FokI	GGATG	2 cut(s)	71, 674
Fsp4HI	GCNGC	1 cut(s)	939
FspBI	CTAG	3 cut(s)	950, 980, 994
GluI	GCNGC	1 cut(s)	939
GsaI	CCCAGC	1 cut(s)	694
HapII	CCGG	1 cut(s)	974
Hin1II	CATG	5 cut(s)	45, 335, 430, 510, 745
HinfI	GANTC	8 cut(s)	37, 83, 191, 281, 307, 347, 563, 705
HpaII	CCGG	1 cut(s)	974
HphI	GGTGA	1 cut(s)	332
Hpy166II	GTNNAC	1 cut(s)	725
Hpy188I	TCNGA	4 cut(s)	352, 523, 817, 858
Hpy188III	TCNNGA	7 cut(s)	80, 398, 611, 659, 670, 742, 748
Hpy8I	GTNNAC	1 cut(s)	725
HpyAV	CCTTC	2 cut(s)	122, 721
HpyCH4III	ACNGT	6 cut(s)	630, 718, 766, 787, 800, 821
HpyCH4IV	ACGT	1 cut(s)	184
HpyCH4V	TGCA	5 cut(s)	233, 538, 725, 770, 941
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 944
HpyF3I	CTNAG	3 cut(s)	102, 117, 456
HpySE526I	ACGT	1 cut(s)	184
Hsp92II	CATG	5 cut(s)	45, 335, 430, 510, 745
Ksp22I	TGATCA	1 cut(s)	744
Kzo9I	GATC	3 cut(s)	120, 394, 744
Lsp1109I	GCAGC	1 cut(s)	925
LweI	GCATC	4 cut(s)	64, 463, 779, 862
MaeI	CTAG	3 cut(s)	950, 980, 994
MaeII	ACGT	1 cut(s)	184
MaeIII	GTNAC	1 cut(s)	603
MalI	GATC	3 cut(s)	122, 396, 746
MboI	GATC	3 cut(s)	120, 394, 744
MboII	GAAGA	6 cut(s)	6, 236, 242, 275, 454, 646
MfeI	CAATTG	1 cut(s)	417
MhlI	GDGCHC	1 cut(s)	727
MlyI	GAGTC	4 cut(s)	200, 301, 572, 714
MnlI	CCTC	5 cut(s)	97, 352, 394, 799, 947
MseI	TTAA	5 cut(s)	20, 141, 168, 495, 701
MslI	CAYNNNNRTG	2 cut(s)	336, 916
MspCI	CTTAAG	1 cut(s)	19
MspI	CCGG	1 cut(s)	974
MspR9I	CCNGG	2 cut(s)	47, 729
MunI	CAATTG	1 cut(s)	417
MvaI	CCWGG	2 cut(s)	47, 729
MvnI	CGCG	1 cut(s)	569
MwoI	GCNNNNNNNGC	2 cut(s)	74, 944
NdeII	GATC	3 cut(s)	120, 394, 744
NlaIII	CATG	5 cut(s)	45, 335, 430, 510, 745
NspV	TTCGAA	1 cut(s)	840
PagI	TCATGA	1 cut(s)	741
PfeI	GAWTC	4 cut(s)	37, 83, 281, 347
PkrI	GCNGC	1 cut(s)	940
PleI	GAGTC	4 cut(s)	199, 301, 571, 713
PpsI	GAGTC	4 cut(s)	199, 301, 571, 713
Psp6I	CCWGG	2 cut(s)	45, 727
PspFI	CCCAGC	1 cut(s)	690
PspGI	CCWGG	2 cut(s)	45, 727
RseI	CAYNNNNRTG	2 cut(s)	336, 916
SaqAI	TTAA	5 cut(s)	20, 141, 168, 495, 701
SatI	GCNGC	1 cut(s)	939
Sau3AI	GATC	3 cut(s)	120, 394, 744
SchI	GAGTC	4 cut(s)	200, 301, 572, 714
ScrFI	CCNGG	2 cut(s)	47, 729
SduI	GDGCHC	1 cut(s)	727
SetI	ASST	9 cut(s)	103, 108, 187, 289, 405, 462, 491, 692, 958
SfaNI	GCATC	4 cut(s)	64, 463, 779, 862
SfuI	TTCGAA	1 cut(s)	840
SmiMI	CAYNNNNRTG	2 cut(s)	336, 916
SmlI	CTYRAG	1 cut(s)	19
SmoI	CTYRAG	1 cut(s)	19
SsiI	CCGC	1 cut(s)	567
SspMI	CTAG	3 cut(s)	950, 980, 994
StyD4I	CCNGG	2 cut(s)	45, 727
TaaI	ACNGT	6 cut(s)	630, 718, 766, 787, 800, 821
TaiI	ACGT	1 cut(s)	187
TaqI	TCGA	4 cut(s)	32, 81, 383, 840
TfiI	GAWTC	4 cut(s)	37, 83, 281, 347
Tru1I	TTAA	5 cut(s)	20, 141, 168, 495, 701
Tru9I	TTAA	5 cut(s)	20, 141, 168, 495, 701
TscAI	CASTG	1 cut(s)	826
TseI	GCWGC	1 cut(s)	938
TspDTI	ATGAA	2 cut(s)	161, 699
TspGWI	ACGGA	1 cut(s)	309
TspRI	CASTG	1 cut(s)	826
Vha464I	CTTAAG	1 cut(s)	19
VneI	GTGCAC	1 cut(s)	723
XapI	RAATTY	3 cut(s)	112, 644, 865
XcmI	CCANNNNNNNNNTGG	1 cut(s)	310
XspI	CTAG	3 cut(s)	950, 980, 994

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.