Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00684

Orthogroup ID

OG0004242

Physical Location & Seq

Genomic Coordinates Reverse (-)

3447 .. 4118

Gene Structure 672 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G015080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGCCTATTGTTCGAGCACTTGAATCTGCTTCTGCAAGCATCCTCCTTAACAAGTTGGCCACTCAAGATGTCATAGATTTCTTCCTCAAGTGGGAAATCGATGGCTCCCTGCTAGCAAAGCTCAAGAGAAACCTGTTTGTCATTCATGCAGTTCTCAATCGTGCTGAGGAGAAGCAAGTCCAGGACTCCAATGTCAAAGCTTGGCTCGAGGACGTCAGAGTTGCAGCTTATGATGCCGAGGACATATTGGATGACATCACAAATGATGCTCTTGAATCACAAAACAGCAAACATGAGGTATGGAATTCTAAGATCAAAGAAGGGATAGACTTTAAGATCAGAGACATTGCTAATACTCTTAATCCTTTTAGAGAACGTGTAGAGTTGAAAATGAAAAAGATTATAGATATATTTGAAGAGATTGCAAAACAGAAAGATATTCTTCGTTTGAGAGAAGATTCTGGTGGTATAGAATCAGGTTTTGACAGATTGTCCACGACTCCAATGTTAGATGATGAATCTCATGTTTATGGTAGAGAATTTGATAAGGAGGAGATAATTACTTTGCTGAATTTGGGTGGAAATGATGATGGGGTTTCTATAATCCCAATTGTAGGCATGGGAGGTATTGGGAAGACTACACTTGCTCAGCTTGTGTATAATGATGCTAAT

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

224

Amino Acids

25.23

Weight (kDa)

4.74

Isoelectric Point (pI)

36.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	28 - 98	1.4e-16	Rx N-terminal domain
NB-ARC	PF00931	183 - 222	4e-06	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004242)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01950 FvH4_7g01950 FvH4_7g01950 FvH4_7g01950 FvH4_7g01950
malus_domestica	MD07G1025200.v1.1
prunus_persica	Prupe.2G025700_v2.0.a1
pyrus_communis	pycom07g01950
rosa_chinensis	RchiOBHm_Chr1g0318941
rosa_multiflora	Rmu_sc0000504.1_g000032 Rmu_sc0001304.1_g000001 Rmu_sc0001304.1_g000002 Rmu_sc0001304.1_g000003 Rmu_sc0006228.1_g000001 Rmu_sc0009454.1_g000007
rosa_roxburghii	Rroxscaffold_4G00328760 Rroxscaffold_4G00328790 Rroxscaffold_4G00328810
rosa_rugosa	Rorug01G0025200 Rorug01G0025500 Rorug01G0025600
rosa_samantha	Rh1AG037200 Rh1AG037300 Rh1AG037400 Rh1BG033400 Rh1BG033800 Rh1CG036600 Rh1DG033700 Rh1DG034000
rosa_wichuraiana	Rw0G005440 Rw0G015080 Rw1G002890 Rw1G002900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	191
AatII	GACGTC	1 cut(s)	216
AcoI	YGGCCR	1 cut(s)	57
AcsI	RAATTY	3 cut(s)	304, 539, 571
AcyI	GRCGYC	1 cut(s)	213
AfiI	CCNNNNNNNGG	2 cut(s)	91, 614
AflIII	ACRYGT	1 cut(s)	376
AgsI	TTSAA	4 cut(s)	23, 275, 388, 416
AhdI	GACNNNNNGTC	1 cut(s)	490
AjnI	CCWGG	1 cut(s)	180
AluBI	AGCT	4 cut(s)	121, 200, 227, 652
AluI	AGCT	4 cut(s)	121, 200, 227, 652
Alw21I	GWGCWC	1 cut(s)	19
Alw26I	GTCTC	1 cut(s)	336
Ama87I	CYCGRG	1 cut(s)	206
AoxI	GGCC	1 cut(s)	57
ApeKI	GCWGC	1 cut(s)	224
ApoI	RAATTY	3 cut(s)	304, 539, 571
AsuNHI	GCTAGC	1 cut(s)	112
AvaI	CYCGRG	1 cut(s)	206
BalI	TGGCCA	1 cut(s)	59
BbsI	GAAGAC	1 cut(s)	641
Bbv12I	GWGCWC	1 cut(s)	19
BbvCI	CCTCAGC	1 cut(s)	165
BbvI	GCAGC	1 cut(s)	236
BccI	CCATC	2 cut(s)	95, 584
BciT130I	CCWGG	1 cut(s)	182
BcoDI	GTCTC	1 cut(s)	336
BfaI	CTAG	1 cut(s)	113
BisI	GCNGC	1 cut(s)	225
BlpI	GCTNAGC	1 cut(s)	648
BlsI	GCNGC	1 cut(s)	226
Bme1390I	CCNGG	1 cut(s)	182
BmeRI	GACNNNNNGTC	1 cut(s)	490
BmeT110I	CYCGRG	1 cut(s)	206
BmiI	GGNNCC	1 cut(s)	106
BmrFI	CCNGG	1 cut(s)	182
BmsI	GCATC	4 cut(s)	48, 223, 256, 655
BmtI	GCTAGC	1 cut(s)	116
BpiI	GAAGAC	1 cut(s)	641
Bpu10I	CCTNAGC	1 cut(s)	165
Bpu1102I	GCTNAGC	1 cut(s)	648
BpuEI	CTTGAG	3 cut(s)	48, 71, 107
Bsa29I	ATCGAT	1 cut(s)	99
BsaHI	GRCGYC	1 cut(s)	213
BsaJI	CCNNGG	1 cut(s)	237
Bsc4I	CCNNNNNNNGG	2 cut(s)	91, 614
Bse3DI	GCAATG	1 cut(s)	345
BseBI	CCWGG	1 cut(s)	182
BseCI	ATCGAT	1 cut(s)	99
BseDI	CCNNGG	1 cut(s)	237
BseGI	GGATG	2 cut(s)	39, 256
BseLI	CCNNNNNNNGG	2 cut(s)	91, 614
BseMI	GCAATG	1 cut(s)	345
BseMII	CTCAG	2 cut(s)	156, 662
BseRI	GAGGAG	2 cut(s)	182, 566
BseXI	GCAGC	1 cut(s)	236
BshFI	GGCC	1 cut(s)	59
BshVI	ATCGAT	1 cut(s)	99
BsiHKAI	GWGCWC	1 cut(s)	19
BsiHKCI	CYCGRG	1 cut(s)	206
BslI	CCNNNNNNNGG	2 cut(s)	91, 614
BsmAI	GTCTC	1 cut(s)	336
BsnI	GGCC	1 cut(s)	59
BsoBI	CYCGRG	1 cut(s)	206
Bsp1286I	GDGCHC	1 cut(s)	19
Bsp143I	GATC	2 cut(s)	312, 336
Bsp1720I	GCTNAGC	1 cut(s)	648
BspANI	GGCC	1 cut(s)	59
BspCNI	CTCAG	2 cut(s)	157, 661
BspDI	ATCGAT	1 cut(s)	99
BspLI	GGNNCC	1 cut(s)	106
BspOI	GCTAGC	1 cut(s)	116
BsrDI	GCAATG	1 cut(s)	345
BssECI	CCNNGG	1 cut(s)	237
BssMI	GATC	2 cut(s)	312, 336
BssNI	GRCGYC	1 cut(s)	213
Bst2UI	CCWGG	1 cut(s)	182
Bst6I	CTCTTC	1 cut(s)	411
BstACI	GRCGYC	1 cut(s)	213
BstC8I	GCNNGC	2 cut(s)	37, 114
BstDEI	CTNAG	3 cut(s)	165, 309, 648
BstF5I	GGATG	2 cut(s)	39, 256
BstKTI	GATC	2 cut(s)	315, 339
BstMAI	GTCTC	1 cut(s)	336
BstMBI	GATC	2 cut(s)	312, 336
BstMWI	GCNNNNNNNGC	2 cut(s)	118, 233
BstNI	CCWGG	1 cut(s)	182
BstSCI	CCNGG	1 cut(s)	180
BstV1I	GCAGC	1 cut(s)	236
BstV2I	GAAGAC	1 cut(s)	641
Bsu15I	ATCGAT	1 cut(s)	99
BsuRI	GGCC	1 cut(s)	59
BsuTUI	ATCGAT	1 cut(s)	99
BtsCI	GGATG	2 cut(s)	39, 256
Cac8I	GCNNGC	2 cut(s)	37, 114
ClaI	ATCGAT	1 cut(s)	99
CviAII	CATG	4 cut(s)	146, 293, 524, 619
CviJI	RGCY	7 cut(s)	59, 105, 121, 200, 205, 227, 652
CviKI_1	RGCY	7 cut(s)	59, 105, 121, 200, 205, 227, 652
DdeI	CTNAG	3 cut(s)	165, 309, 648
DpnI	GATC	2 cut(s)	314, 338
DpnII	GATC	2 cut(s)	312, 336
DrdI	GACNNNNNNGTC	1 cut(s)	191
DriI	GACNNNNNGTC	1 cut(s)	490
DseDI	GACNNNNNNGTC	1 cut(s)	191
EaeI	YGGCCR	1 cut(s)	57
Eam1104I	CTCTTC	1 cut(s)	411
Eam1105I	GACNNNNNGTC	1 cut(s)	490
EarI	CTCTTC	1 cut(s)	411
Eco88I	CYCGRG	1 cut(s)	206
EcoRI	GAATTC	1 cut(s)	304
EcoRII	CCWGG	1 cut(s)	180
FaeI	CATG	4 cut(s)	149, 296, 527, 622
FalI	AAGNNNNNCTT	2 cut(s)	426, 458
FatI	CATG	4 cut(s)	145, 292, 523, 618
Fnu4HI	GCNGC	1 cut(s)	225
FokI	GGATG	2 cut(s)	26, 263
Fsp4HI	GCNGC	1 cut(s)	225
FspBI	CTAG	1 cut(s)	113
GluI	GCNGC	1 cut(s)	225
HaeIII	GGCC	1 cut(s)	59
Hin1I	GRCGYC	1 cut(s)	213
Hin1II	CATG	4 cut(s)	149, 296, 527, 622
HindIII	AAGCTT	1 cut(s)	198
HinfI	GANTC	7 cut(s)	23, 185, 275, 458, 473, 499, 518
Hpy166II	GTNNAC	1 cut(s)	495
Hpy188I	TCNGA	2 cut(s)	218, 341
Hpy188III	TCNNGA	3 cut(s)	65, 124, 272
Hpy8I	GTNNAC	1 cut(s)	495
HpyAV	CCTTC	1 cut(s)	314
HpyCH4IV	ACGT	2 cut(s)	213, 376
HpyCH4V	TGCA	4 cut(s)	35, 149, 224, 425
HpyF10VI	GCNNNNNNNGC	2 cut(s)	118, 233
HpyF3I	CTNAG	3 cut(s)	165, 309, 648
HpySE526I	ACGT	2 cut(s)	213, 376
Hsp92I	GRCGYC	1 cut(s)	213
Hsp92II	CATG	4 cut(s)	149, 296, 527, 622
Kzo9I	GATC	2 cut(s)	312, 336
LmnI	GCTCC	1 cut(s)	110
LpnPI	CCDG	6 cut(s)	122, 146, 167, 194, 447, 462
Lsp1109I	GCAGC	1 cut(s)	236
LweI	GCATC	4 cut(s)	48, 223, 256, 655
MaeI	CTAG	1 cut(s)	113
MaeII	ACGT	2 cut(s)	213, 376
MalI	GATC	2 cut(s)	314, 338
MboI	GATC	2 cut(s)	312, 336
MboII	GAAGA	5 cut(s)	73, 428, 434, 467, 646
MfeI	CAATTG	1 cut(s)	609
MhlI	GDGCHC	1 cut(s)	19
MlsI	TGGCCA	1 cut(s)	59
MluCI	AATT	5 cut(s)	304, 539, 558, 571, 609
MluNI	TGGCCA	1 cut(s)	59
MlyI	GAGTC	2 cut(s)	179, 493
MnlI	CCTC	8 cut(s)	53, 95, 160, 202, 232, 289, 544, 617
Mox20I	TGGCCA	1 cut(s)	59
MscI	TGGCCA	1 cut(s)	59
MseI	TTAA	3 cut(s)	48, 333, 360
MslI	CAYNNNNRTG	1 cut(s)	528
Msp20I	TGGCCA	1 cut(s)	59
MspR9I	CCNGG	1 cut(s)	182
MunI	CAATTG	1 cut(s)	609
MvaI	CCWGG	1 cut(s)	182
MwoI	GCNNNNNNNGC	2 cut(s)	118, 233
NdeII	GATC	2 cut(s)	312, 336
NheI	GCTAGC	1 cut(s)	112
NlaIII	CATG	4 cut(s)	149, 296, 527, 622
NlaIV	GGNNCC	1 cut(s)	106
NmeAIII	GCCGAG	1 cut(s)	262
PaeR7I	CTCGAG	1 cut(s)	206
PfeI	GAWTC	5 cut(s)	23, 275, 458, 473, 518
PfoI	TCCNGGA	1 cut(s)	180
PkrI	GCNGC	1 cut(s)	226
PleI	GAGTC	2 cut(s)	179, 493
PpsI	GAGTC	2 cut(s)	179, 493
Psp6I	CCWGG	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	180
PspN4I	GGNNCC	1 cut(s)	106
PspXI	VCTCGAGB	1 cut(s)	206
RseI	CAYNNNNRTG	1 cut(s)	528
SaqAI	TTAA	3 cut(s)	48, 333, 360
SatI	GCNGC	1 cut(s)	225
Sau3AI	GATC	2 cut(s)	312, 336
SchI	GAGTC	2 cut(s)	179, 493
ScrFI	CCNGG	1 cut(s)	182
SduI	GDGCHC	1 cut(s)	19
SfaNI	GCATC	4 cut(s)	48, 223, 256, 655
Sfr274I	CTCGAG	1 cut(s)	206
SlaI	CTCGAG	1 cut(s)	206
SmiMI	CAYNNNNRTG	1 cut(s)	528
SmlI	CTYRAG	4 cut(s)	63, 86, 122, 206
SmoI	CTYRAG	4 cut(s)	63, 86, 122, 206
Sse9I	AATT	5 cut(s)	304, 539, 558, 571, 609
SspMI	CTAG	1 cut(s)	113
StyD4I	CCNGG	1 cut(s)	180
TaiI	ACGT	2 cut(s)	216, 379
TaqI	TCGA	3 cut(s)	13, 99, 207
TasI	AATT	5 cut(s)	304, 539, 558, 571, 609
TfiI	GAWTC	5 cut(s)	23, 275, 458, 473, 518
Tru1I	TTAA	3 cut(s)	48, 333, 360
Tru9I	TTAA	3 cut(s)	48, 333, 360
TseI	GCWGC	1 cut(s)	224
TspDTI	ATGAA	3 cut(s)	134, 407, 531
XapI	RAATTY	3 cut(s)	304, 539, 571
XhoI	CTCGAG	1 cut(s)	206
XspI	CTAG	1 cut(s)	113
ZraI	GACGTC	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.