Rh1CG036600

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0004242
Physical Location & Seq
Forward (+)
7124564 .. 7128264
3701 bp
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UTR
Exon/CDS
Intron
Rh1CG036600.1

Sequence Viewer

Length: 1590 bp
ATGCCTATTGTTCGAGCACTTGAATCTGCTTCTGTAAGCATCCTCCTTAACAAGTTGGCCACTCAAGATGTCATAGATTTCTTCCTCAAGTGGGAAATCGATGGCTCCCTGCTAGCAAAGCTCAAGAGAAACCTACTTGTAATTCATGCAGTTCTCAATCATGCTGAGGAGAAGCAAGTCCAGGACTCAAATGTCAAAGCTTGGCTTGAGGACGTCAGAGTTGCAGCTTATGATGCCGAGGACATATTGGATGACATCGCAAATGATGCTCTTGAATCACAAAACAGCAAACATGAGGTATGGAATTCTAAGATCAAAGAAGGGATAGACTTTAAGATCAGAGACATTGCTAATACTCTTAATCCTTTTAGAGAACGTGTAGAGTCGAAAATGATAAAGATTATAGATATATTTGAAGAGATTGCAAAACAGAAAGATATTCTTCGTTTGAGAGAAGATTCTGGCGGTATAGAATCAGGTTTTGACAGATTGCCCACGACTCCAATGTTGGGTGATGAATCTCATGTTTATGGTAGAGAATCTGATAAGGAGGAGATAATTACTTTGCTGAATTTGGGTGGAAATGATGATGGGGTTTCTATAATCCCAATTGTAGGCATGGGAGAAAAGCTGCGCATCAAGAACTGCAGAGCAATAACTACCTTCTCACAGAATCCTGCACTTGGGAATTTGGAACCTGTAGAATTCCCTAGCCTGCAACTGCTTGTTCTTGTTGGTTGCAGTGAGCTTGAAAACCTTCCTTTTTCCCTCCCTTCGTTGAAAGTTCTTGAGATAGATGGTTGTGAAAAATTGGCTGCACTTCCAAGGATGGTGGAACTTAGTACATTGTACCTGATCGATTCAAATGCTGAATTACTTGGATGGATTATGGAATTTAGCTCGCTGACCTCTTTGCACCTAACTCATATTCCACATTTGAAGCATCTACCTGAAGGCTTTATCCAACAGTCTGCAAAACTTGAAGAATTGAGCCTTGCAGGCTTTCCTGACCTTGAATATTTGGTAGATGACCGAGTTGGACTAGCACACCTTGTATCCCTTCAACGCTTGACAATATCCCATTGTCCTGAGTTTATTGCTTTGCCTGATGAAGATGATCAGCTCCCACCTGTACTTAAATATTTGGATTTGAAACATTGTCCTAGCCTGATGAAGCTGCCGGGTAAACTTCACAACCTTGAGTGTCTTGCAGAGCTGCAGATTGAATGGTGTTCAAAGATTGAAGCATTTCCAGATGTGGGGTTGCCTGACAAACTGAAGCGTCTTGTAGTCCGCGAATGTGGGGCTCTGAAGACCCTTCCTCAGGAGCTTCTCTGCAATAACAATTTTCTCGAGTATTTAGAAGTTCATAAATGTCCTTCTCTTGTGTCAGTTCTTGAAGAAGGAAACTTGCCATCAACTCTAACACATATGAAATTTTACTATTGCAAAATTCTGGGATCACTGCCTGAGGGTTTGATGCACAAAGACAATATGACTCTAAAGTACTTGGAGATAGACAACTGTTCCTCTCTCATGTCCTTTCCAAATGACATTGCCATTGAGCCTTCTCAACCTCACGAATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

529

Amino Acids

59.45

Weight (kDa)

4.9

Isoelectric Point (pI)

48.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 12 - 99 2.1e-17 Rx N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 191
AatII GACGTC 1 cut(s) 216
Acc16I TGCGCA 1 cut(s) 635
AccII CGCG 1 cut(s) 1296
AciI CCGC 2 cut(s) 465, 1294
AclWI GGATC 1 cut(s) 1468
AcoI YGGCCR 1 cut(s) 57
AcsI RAATTY 7 cut(s) 304, 571, 688, 704, 893, 1436, 1452
AcuI CTGAAG 3 cut(s) 972, 1298, 1331
AcyI GRCGYC 1 cut(s) 213
AfaI GTAC 4 cut(s) 844, 851, 1134, 1508
AfiI CCNNNNNNNGG 6 cut(s) 91, 509, 614, 683, 1259, 1324
AflIII ACRYGT 1 cut(s) 376
AjnI CCWGG 1 cut(s) 180
Alw21I GWGCWC 1 cut(s) 19
Alw26I GTCTC 1 cut(s) 336
AlwI GGATC 1 cut(s) 1468
Ama87I CYCGRG 1 cut(s) 1352
AoxI GGCC 1 cut(s) 57
ApeKI GCWGC 5 cut(s) 224, 631, 815, 1177, 1216
ApoI RAATTY 7 cut(s) 304, 571, 688, 704, 893, 1436, 1452
Asp700I GAANNNNTTC 2 cut(s) 756, 1248
AspLEI GCGC 1 cut(s) 636
AsuC2I CCSGG 1 cut(s) 1182
AsuHPI GGTGA 1 cut(s) 524
AsuNHI GCTAGC 1 cut(s) 112
AvaI CYCGRG 1 cut(s) 1352
AxyI CCTNAGG 2 cut(s) 1323, 1470
BalI TGGCCA 1 cut(s) 59
BanII GRGCYC 1 cut(s) 1309
BbsI GAAGAC 1 cut(s) 1319
Bbv12I GWGCWC 1 cut(s) 19
BbvCI CCTCAGC 1 cut(s) 165
BbvI GCAGC 5 cut(s) 236, 618, 802, 1164, 1203
BccI CCATC 6 cut(s) 95, 584, 791, 823, 876, 1423
BcgI CGANNNNNNTGC 2 cut(s) 848, 882
BciT130I CCWGG 1 cut(s) 182
BciVI GTATCC 1 cut(s) 1066
BclI TGATCA 1 cut(s) 1117
BcnI CCSGG 1 cut(s) 1182
BcoDI GTCTC 1 cut(s) 336
BfaI CTAG 4 cut(s) 113, 711, 1043, 1164
BfmI CTRYAG 3 cut(s) 646, 699, 1217
BfuI GTATCC 1 cut(s) 1066
BglI GCCNNNNNGGC 1 cut(s) 999
BisI GCNGC 5 cut(s) 225, 632, 816, 1178, 1217
BlsI GCNGC 5 cut(s) 226, 633, 817, 1179, 1218
BmcAI AGTACT 1 cut(s) 1508
Bme1390I CCNGG 2 cut(s) 182, 1182
BmeT110I CYCGRG 1 cut(s) 1352
BmiI GGNNCC 2 cut(s) 106, 696
BmrFI CCNGG 2 cut(s) 182, 1182
BmsI GCATC 6 cut(s) 48, 223, 256, 645, 952, 1470
BmtI GCTAGC 1 cut(s) 116
BpiI GAAGAC 1 cut(s) 1319
Bpu10I CCTNAGC 1 cut(s) 165
BpuEI CTTGAG 6 cut(s) 48, 71, 107, 227, 809, 1220
BpuMI CCSGG 1 cut(s) 1182
Bsa29I ATCGAT 2 cut(s) 99, 858
BsaHI GRCGYC 1 cut(s) 213
BsaJI CCNNGG 2 cut(s) 237, 824
Bsc4I CCNNNNNNNGG 6 cut(s) 91, 509, 614, 683, 1259, 1324
Bse21I CCTNAGG 2 cut(s) 1323, 1470
Bse3DI GCAATG 2 cut(s) 345, 1554
BseBI CCWGG 1 cut(s) 182
BseCI ATCGAT 2 cut(s) 99, 858
BseDI CCNNGG 2 cut(s) 237, 824
BseGI GGATG 4 cut(s) 39, 256, 834, 887
BseLI CCNNNNNNNGG 6 cut(s) 91, 509, 614, 683, 1259, 1324
BseMI GCAATG 2 cut(s) 345, 1554
BseMII CTCAG 4 cut(s) 156, 1080, 1337, 1461
BseRI GAGGAG 2 cut(s) 182, 566
BseXI GCAGC 5 cut(s) 236, 618, 802, 1164, 1203
BsgI GTGCAG 2 cut(s) 663, 801
Bsh1236I CGCG 1 cut(s) 1296
BshFI GGCC 1 cut(s) 59
BshVI ATCGAT 2 cut(s) 99, 858
BsiHKAI GWGCWC 1 cut(s) 19
BsiHKCI CYCGRG 1 cut(s) 1352
BsiSI CCGG 1 cut(s) 1181
BslI CCNNNNNNNGG 6 cut(s) 91, 509, 614, 683, 1259, 1324
BsmAI GTCTC 1 cut(s) 336
BsnI GGCC 1 cut(s) 59
BsoBI CYCGRG 1 cut(s) 1352
Bsp1286I GDGCHC 2 cut(s) 19, 1309
Bsp143I GATC 5 cut(s) 312, 336, 855, 1117, 1460
BspACI CCGC 2 cut(s) 465, 1294
BspANI GGCC 1 cut(s) 59
BspCNI CTCAG 4 cut(s) 157, 1081, 1336, 1462
BspDI ATCGAT 2 cut(s) 99, 858
BspFNI CGCG 1 cut(s) 1296
BspLI GGNNCC 2 cut(s) 106, 696
BspMAI CTGCAG 2 cut(s) 650, 1221
BspOI GCTAGC 1 cut(s) 116
BspPI GGATC 1 cut(s) 1468
BsrDI GCAATG 2 cut(s) 345, 1554
BssECI CCNNGG 2 cut(s) 237, 824
BssMI GATC 5 cut(s) 312, 336, 855, 1117, 1460
BssNI GRCGYC 1 cut(s) 213
BssT1I CCWWGG 1 cut(s) 824
Bst2UI CCWGG 1 cut(s) 182
Bst4CI ACNGT 2 cut(s) 969, 1526
Bst6I CTCTTC 1 cut(s) 411
BstACI GRCGYC 1 cut(s) 213
BstAPI GCANNNNNTGC 1 cut(s) 266
BstC8I GCNNGC 4 cut(s) 114, 716, 902, 1000
BstDEI CTNAG 6 cut(s) 165, 309, 839, 1089, 1323, 1470
BstENI CCTNNNNNAGG 1 cut(s) 1322
BstF5I GGATG 4 cut(s) 39, 256, 834, 887
BstFNI CGCG 1 cut(s) 1296
BstHHI GCGC 1 cut(s) 636
BstKTI GATC 5 cut(s) 315, 339, 858, 1120, 1463
BstMAI GTCTC 1 cut(s) 336
BstMBI GATC 5 cut(s) 312, 336, 855, 1117, 1460
BstMWI GCNNNNNNNGC 4 cut(s) 118, 233, 266, 999
BstNI CCWGG 1 cut(s) 182
BstSCI CCNGG 2 cut(s) 180, 1180
BstSFI CTRYAG 3 cut(s) 646, 699, 1217
BstUI CGCG 1 cut(s) 1296
BstV1I GCAGC 5 cut(s) 236, 618, 802, 1164, 1203
BstV2I GAAGAC 1 cut(s) 1319
Bsu15I ATCGAT 2 cut(s) 99, 858
Bsu36I CCTNAGG 2 cut(s) 1323, 1470
BsuI GTATCC 1 cut(s) 1066
BsuRI GGCC 1 cut(s) 59
BsuTUI ATCGAT 2 cut(s) 99, 858
BtgZI GCGATG 1 cut(s) 241
BtsCI GGATG 4 cut(s) 39, 256, 834, 887
BtsI GCAGTG 2 cut(s) 748, 1463
BtsIMutI CAGTG 2 cut(s) 748, 1463
Cac8I GCNNGC 4 cut(s) 114, 716, 902, 1000
CfoI GCGC 1 cut(s) 636
ClaI ATCGAT 2 cut(s) 99, 858
CseI GACGC 1 cut(s) 1271
Csp6I GTAC 4 cut(s) 843, 850, 1133, 1507
CspCI CAANNNNNGTGG 2 cut(s) 813, 848
CviAII CATG 6 cut(s) 146, 161, 293, 524, 619, 1537
CviQI GTAC 4 cut(s) 843, 850, 1133, 1507
DdeI CTNAG 6 cut(s) 165, 309, 839, 1089, 1323, 1470
DpnI GATC 5 cut(s) 314, 338, 857, 1119, 1462
DpnII GATC 5 cut(s) 312, 336, 855, 1117, 1460
DrdI GACNNNNNNGTC 1 cut(s) 191
DseDI GACNNNNNNGTC 1 cut(s) 191
EaeI YGGCCR 1 cut(s) 57
Eam1104I CTCTTC 1 cut(s) 411
EarI CTCTTC 1 cut(s) 411
Eco130I CCWWGG 1 cut(s) 824
Eco24I GRGCYC 1 cut(s) 1309
Eco57I CTGAAG 3 cut(s) 972, 1298, 1331
Eco81I CCTNAGG 2 cut(s) 1323, 1470
Eco88I CYCGRG 1 cut(s) 1352
EcoNI CCTNNNNNAGG 1 cut(s) 1322
EcoRI GAATTC 2 cut(s) 304, 704
EcoRII CCWGG 1 cut(s) 180
EcoT14I CCWWGG 1 cut(s) 824
EcoT38I GRGCYC 1 cut(s) 1309
ErhI CCWWGG 1 cut(s) 824
FaeI CATG 6 cut(s) 149, 164, 296, 527, 622, 1540
FalI AAGNNNNNCTT 4 cut(s) 189, 221, 426, 458
FatI CATG 6 cut(s) 145, 160, 292, 523, 618, 1536
FauNDI CATATG 1 cut(s) 1431
FbaI TGATCA 1 cut(s) 1117
Fnu4HI GCNGC 5 cut(s) 225, 632, 816, 1178, 1217
FokI GGATG 4 cut(s) 26, 263, 841, 894
FriOI GRGCYC 1 cut(s) 1309
Fsp4HI GCNGC 5 cut(s) 225, 632, 816, 1178, 1217
FspBI CTAG 4 cut(s) 113, 711, 1043, 1164
FspI TGCGCA 1 cut(s) 635
GlaI GCGC 1 cut(s) 635
GluI GCNGC 5 cut(s) 225, 632, 816, 1178, 1217
HaeIII GGCC 1 cut(s) 59
HapII CCGG 1 cut(s) 1181
HgaI GACGC 1 cut(s) 1271
HhaI GCGC 1 cut(s) 636
Hin1I GRCGYC 1 cut(s) 213
Hin1II CATG 6 cut(s) 149, 164, 296, 527, 622, 1540
Hin6I GCGC 1 cut(s) 634
HinP1I GCGC 1 cut(s) 634
HindIII AAGCTT 1 cut(s) 198
HpaII CCGG 1 cut(s) 1181
HphI GGTGA 1 cut(s) 524
Hpy166II GTNNAC 1 cut(s) 1187
Hpy188I TCNGA 4 cut(s) 218, 341, 544, 1311
Hpy8I GTNNAC 1 cut(s) 1187
HpyCH4III ACNGT 2 cut(s) 969, 1526
HpyCH4IV ACGT 2 cut(s) 213, 376
HpyF10VI GCNNNNNNNGC 4 cut(s) 118, 233, 266, 999
HpyF3I CTNAG 6 cut(s) 165, 309, 839, 1089, 1323, 1470
HpySE526I ACGT 2 cut(s) 213, 376
Hsp92I GRCGYC 1 cut(s) 213
Hsp92II CATG 6 cut(s) 149, 164, 296, 527, 622, 1540
HspAI GCGC 1 cut(s) 634
Ksp22I TGATCA 1 cut(s) 1117
Kzo9I GATC 5 cut(s) 312, 336, 855, 1117, 1460
LmnI GCTCC 3 cut(s) 110, 1128, 1327
Lsp1109I GCAGC 5 cut(s) 236, 618, 802, 1164, 1203
LweI GCATC 6 cut(s) 48, 223, 256, 645, 952, 1470
MaeI CTAG 4 cut(s) 113, 711, 1043, 1164
MaeII ACGT 2 cut(s) 213, 376
MalI GATC 5 cut(s) 314, 338, 857, 1119, 1462
MboI GATC 5 cut(s) 312, 336, 855, 1117, 1460
MboII GAAGA 8 cut(s) 73, 428, 434, 467, 995, 1124, 1324, 1412
MfeI CAATTG 1 cut(s) 609
MhlI GDGCHC 2 cut(s) 19, 1309
MlsI TGGCCA 1 cut(s) 59
MluNI TGGCCA 1 cut(s) 59
MlyI GAGTC 4 cut(s) 179, 392, 493, 1492
MmeI TCCRAC 2 cut(s) 988, 1018
Mox20I TGGCCA 1 cut(s) 59
MroXI GAANNNNTTC 2 cut(s) 756, 1248
MscI TGGCCA 1 cut(s) 59
MseI TTAA 4 cut(s) 48, 333, 360, 1137
MslI CAYNNNNRTG 1 cut(s) 528
Msp20I TGGCCA 1 cut(s) 59
MspI CCGG 1 cut(s) 1181
MspR9I CCNGG 2 cut(s) 182, 1182
MunI CAATTG 1 cut(s) 609
MvaI CCWGG 1 cut(s) 182
MvnI CGCG 1 cut(s) 1296
MwoI GCNNNNNNNGC 4 cut(s) 118, 233, 266, 999
NciI CCSGG 1 cut(s) 1182
NdeI CATATG 1 cut(s) 1431
NdeII GATC 5 cut(s) 312, 336, 855, 1117, 1460
NheI GCTAGC 1 cut(s) 112
NlaIII CATG 6 cut(s) 149, 164, 296, 527, 622, 1540
NlaIV GGNNCC 2 cut(s) 106, 696
NmeAIII GCCGAG 1 cut(s) 262
NsbI TGCGCA 1 cut(s) 635
PaeR7I CTCGAG 1 cut(s) 1352
PdmI GAANNNNTTC 2 cut(s) 756, 1248
PfeI GAWTC 9 cut(s) 23, 275, 458, 473, 518, 539, 673, 860, 1583
PfoI TCCNGGA 1 cut(s) 180
PkrI GCNGC 5 cut(s) 226, 633, 817, 1179, 1218
PleI GAGTC 4 cut(s) 179, 391, 493, 1492
PpsI GAGTC 4 cut(s) 179, 391, 493, 1492
Psp6I CCWGG 1 cut(s) 180
PspGI CCWGG 1 cut(s) 180
PspN4I GGNNCC 2 cut(s) 106, 696
PstI CTGCAG 2 cut(s) 650, 1221
RsaI GTAC 4 cut(s) 844, 851, 1134, 1508
RsaNI GTAC 4 cut(s) 843, 850, 1133, 1507
RseI CAYNNNNRTG 1 cut(s) 528
SaqAI TTAA 4 cut(s) 48, 333, 360, 1137
SatI GCNGC 5 cut(s) 225, 632, 816, 1178, 1217
Sau3AI GATC 5 cut(s) 312, 336, 855, 1117, 1460
ScaI AGTACT 1 cut(s) 1508
SchI GAGTC 4 cut(s) 179, 392, 493, 1492
ScrFI CCNGG 2 cut(s) 182, 1182
SduI GDGCHC 2 cut(s) 19, 1309
SfaNI GCATC 6 cut(s) 48, 223, 256, 645, 952, 1470
SfcI CTRYAG 3 cut(s) 646, 699, 1217
Sfr274I CTCGAG 1 cut(s) 1352
SlaI CTCGAG 1 cut(s) 1352
SmiMI CAYNNNNRTG 1 cut(s) 528
SmlI CTYRAG 7 cut(s) 63, 86, 122, 206, 788, 1199, 1352
SmoI CTYRAG 7 cut(s) 63, 86, 122, 206, 788, 1199, 1352
SsiI CCGC 2 cut(s) 465, 1294
SspI AATATT 2 cut(s) 1019, 1142
SspMI CTAG 4 cut(s) 113, 711, 1043, 1164
StyD4I CCNGG 2 cut(s) 180, 1180
StyI CCWWGG 1 cut(s) 824
TaaI ACNGT 2 cut(s) 969, 1526
TaiI ACGT 2 cut(s) 216, 379
TaqI TCGA 5 cut(s) 13, 99, 386, 858, 1353
TaqII GACCGA 1 cut(s) 1047
TatI WGTACW 3 cut(s) 842, 1132, 1506
TfiI GAWTC 9 cut(s) 23, 275, 458, 473, 518, 539, 673, 860, 1583
Tru1I TTAA 4 cut(s) 48, 333, 360, 1137
Tru9I TTAA 4 cut(s) 48, 333, 360, 1137
TscAI CASTG 2 cut(s) 748, 1470
TseI GCWGC 5 cut(s) 224, 631, 815, 1177, 1216
TspDTI ATGAA 6 cut(s) 134, 531, 1125, 1187, 1358, 1448
TspRI CASTG 2 cut(s) 748, 1470
XagI CCTNNNNNAGG 1 cut(s) 1322
XapI RAATTY 7 cut(s) 304, 571, 688, 704, 893, 1436, 1452
XhoI CTCGAG 1 cut(s) 1352
XmnI GAANNNNTTC 2 cut(s) 756, 1248
XspI CTAG 4 cut(s) 113, 711, 1043, 1164
ZraI GACGTC 1 cut(s) 214
ZrmI AGTACT 1 cut(s) 1508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.