Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004242

Physical Location & Seq

Genomic Coordinates Forward (+)

6564497 .. 6565453

Gene Structure 957 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG037200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGAAAGAATGGGAGAAATGGTCATCTTCAGAAGATGAAAGTCTTAAAGGATTTCCCAGCCTTCGGGAGCTGTCCATATTTAGATGTTCCAAGTTAACAAAGTTTGCACATGGATTTGCTTCTCTAGAAAAGCTGCGCATCAAGAACTGCGGAGCAATAACTACCTTCTCACAGAATCCTGCACTTGGGAATTTGGAACCTGTAGAATTCCCTAGCCTGAATTTGGAACCTGTAGAATTCCCTAGCCTGCAACTGCTTGTTCTTGTTGGTTGCAGTGAGCTTGAAAACCTTCCTTTTTCCCTCCCTTTGTTGAAAATGCTTGAGATAGATGGTTGTGAAAAATTGGCTGCACTTCCGAGGATGGTGGAACTTAGTACATTGTACCTGATCGATTCAAATGCTGAATTACTTGGATCCAAGATGGAATTTAGCTCGCTGACCTCTTTGCACCTAACTCATATTCCAGATGTGAAGCATCTACCTGAAGGCTTTATCCAACAGTCTGCAAAACTTGAAAAATTGAGTCTTACAAGCTTTCCTGACCTTGAATATTTGGCAGATGACCGAGTTGGACTAGCACACCTTGTATCCCTTCAACGCTTGACAATATCCCATTGTCCTCAGTTTGTTGCTTTGCCTGATGAGCTCCCACCTGTACTTAAATATTTGGATTTGAAACATCGTCCTAGCCTGATGAAGCTGCCTGGTAAACTTCACAACCTTGAGTGTCTTGCAGAGCTGCAGATTGAATGGTGTTCAAAGATCGAAGCATTTCCAGATGTGGGGTTGCCTGACAAACTGAAGCGTCTTGTAATCCGCGAATGTGGTGCTCTGAAGACTCTTCCTCAGGAGCTTCTCTGCAATAACAATTTTCTCGAGTATTTAGAAGTCCATAAATGTCCTTCTCTTGTGTCAGTTCTTGAAGAAGGAAACTTGTCATCGACTCTTAACACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

318

Amino Acids

35.67

Weight (kDa)

5.37

Isoelectric Point (pI)

44.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004242)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01950 FvH4_7g01950 FvH4_7g01950 FvH4_7g01950 FvH4_7g01950
malus_domestica	MD07G1025200.v1.1
prunus_persica	Prupe.2G025700_v2.0.a1
pyrus_communis	pycom07g01950
rosa_chinensis	RchiOBHm_Chr1g0318941
rosa_multiflora	Rmu_sc0000504.1_g000032 Rmu_sc0001304.1_g000001 Rmu_sc0001304.1_g000002 Rmu_sc0001304.1_g000003 Rmu_sc0006228.1_g000001 Rmu_sc0009454.1_g000007
rosa_roxburghii	Rroxscaffold_4G00328760 Rroxscaffold_4G00328790 Rroxscaffold_4G00328810
rosa_rugosa	Rorug01G0025200 Rorug01G0025500 Rorug01G0025600
rosa_samantha	Rh1AG037200 Rh1AG037300 Rh1AG037400 Rh1BG033400 Rh1BG033800 Rh1CG036600 Rh1DG033700 Rh1DG034000
rosa_wichuraiana	Rw0G005440 Rw0G015080 Rw1G002890 Rw1G002900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	137
AccII	CGCG	1 cut(s)	819
AciI	CCGC	2 cut(s)	150, 817
AclWI	GGATC	2 cut(s)	408, 421
AcsI	RAATTY	5 cut(s)	190, 206, 220, 236, 425
AcuI	CTGAAG	4 cut(s)	12, 504, 821, 854
AfaI	GTAC	3 cut(s)	376, 383, 657
AfiI	CCNNNNNNNGG	4 cut(s)	63, 185, 223, 782
AjnI	CCWGG	1 cut(s)	703
AluBI	AGCT	9 cut(s)	70, 133, 280, 432, 534, 646, 700, 739, 853
AluI	AGCT	9 cut(s)	70, 133, 280, 432, 534, 646, 700, 739, 853
Alw21I	GWGCWC	2 cut(s)	648, 832
AlwI	GGATC	2 cut(s)	408, 421
Ama87I	CYCGRG	1 cut(s)	875
ApeKI	GCWGC	4 cut(s)	133, 347, 700, 739
ApoI	RAATTY	5 cut(s)	190, 206, 220, 236, 425
Asp700I	GAANNNNTTC	2 cut(s)	288, 771
AspLEI	GCGC	1 cut(s)	138
AvaI	CYCGRG	1 cut(s)	875
AxyI	CCTNAGG	1 cut(s)	846
BamHI	GGATCC	1 cut(s)	413
BanII	GRGCYC	1 cut(s)	648
BbsI	GAAGAC	1 cut(s)	842
Bbv12I	GWGCWC	2 cut(s)	648, 832
BbvI	GCAGC	4 cut(s)	120, 334, 687, 726
BccI	CCATC	3 cut(s)	323, 355, 415
BcgI	CGANNNNNNTGC	4 cut(s)	380, 414, 809, 843
BciT130I	CCWGG	1 cut(s)	705
BciVI	GTATCC	1 cut(s)	598
BfaI	CTAG	5 cut(s)	125, 213, 243, 575, 687
BfmI	CTRYAG	3 cut(s)	201, 231, 740
BfuI	GTATCC	1 cut(s)	598
BisI	GCNGC	4 cut(s)	134, 348, 701, 740
BlsI	GCNGC	4 cut(s)	135, 349, 702, 741
Bme1390I	CCNGG	1 cut(s)	705
BmeT110I	CYCGRG	1 cut(s)	875
BmiI	GGNNCC	3 cut(s)	198, 228, 415
BmrFI	CCNGG	1 cut(s)	705
BmsI	GCATC	2 cut(s)	147, 484
BpiI	GAAGAC	1 cut(s)	842
BpuEI	CTTGAG	2 cut(s)	341, 743
Bsa29I	ATCGAT	1 cut(s)	390
BsaJI	CCNNGG	1 cut(s)	356
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bsc4I	CCNNNNNNNGG	4 cut(s)	63, 185, 223, 782
Bse21I	CCTNAGG	1 cut(s)	846
BseBI	CCWGG	1 cut(s)	705
BseCI	ATCGAT	1 cut(s)	390
BseDI	CCNNGG	1 cut(s)	356
BseGI	GGATG	1 cut(s)	366
BseLI	CCNNNNNNNGG	4 cut(s)	63, 185, 223, 782
BseMII	CTCAG	2 cut(s)	635, 860
BseXI	GCAGC	4 cut(s)	120, 334, 687, 726
BseYI	CCCAGC	1 cut(s)	56
BsgI	GTGCAG	2 cut(s)	165, 333
Bsh1236I	CGCG	1 cut(s)	819
BshVI	ATCGAT	1 cut(s)	390
BsiHKAI	GWGCWC	2 cut(s)	648, 832
BsiHKCI	CYCGRG	1 cut(s)	875
BslI	CCNNNNNNNGG	4 cut(s)	63, 185, 223, 782
BsoBI	CYCGRG	1 cut(s)	875
Bsp1286I	GDGCHC	2 cut(s)	648, 832
Bsp143I	GATC	3 cut(s)	387, 413, 762
BspACI	CCGC	2 cut(s)	150, 817
BspCNI	CTCAG	2 cut(s)	634, 859
BspDI	ATCGAT	1 cut(s)	390
BspFNI	CGCG	1 cut(s)	819
BspLI	GGNNCC	3 cut(s)	198, 228, 415
BspMAI	CTGCAG	1 cut(s)	744
BspPI	GGATC	2 cut(s)	408, 421
BssECI	CCNNGG	1 cut(s)	356
BssMI	GATC	3 cut(s)	387, 413, 762
Bst2UI	CCWGG	1 cut(s)	705
Bst4CI	ACNGT	1 cut(s)	501
Bst6I	CTCTTC	1 cut(s)	846
BstC8I	GCNNGC	2 cut(s)	248, 434
BstDEI	CTNAG	3 cut(s)	371, 621, 846
BstF5I	GGATG	1 cut(s)	366
BstFNI	CGCG	1 cut(s)	819
BstHHI	GCGC	1 cut(s)	138
BstKTI	GATC	3 cut(s)	390, 416, 765
BstMBI	GATC	3 cut(s)	387, 413, 762
BstMWI	GCNNNNNNNGC	1 cut(s)	643
BstNI	CCWGG	1 cut(s)	705
BstSCI	CCNGG	1 cut(s)	703
BstSFI	CTRYAG	3 cut(s)	201, 231, 740
BstUI	CGCG	1 cut(s)	819
BstV1I	GCAGC	4 cut(s)	120, 334, 687, 726
BstV2I	GAAGAC	1 cut(s)	842
BstX2I	RGATCY	1 cut(s)	413
BstYI	RGATCY	1 cut(s)	413
Bsu15I	ATCGAT	1 cut(s)	390
Bsu36I	CCTNAGG	1 cut(s)	846
BsuI	GTATCC	1 cut(s)	598
BsuTUI	ATCGAT	1 cut(s)	390
BtsCI	GGATG	1 cut(s)	366
BtsI	GCAGTG	1 cut(s)	280
BtsIMutI	CAGTG	1 cut(s)	280
Cac8I	GCNNGC	2 cut(s)	248, 434
CfoI	GCGC	1 cut(s)	138
ClaI	ATCGAT	1 cut(s)	390
CseI	GACGC	1 cut(s)	794
Csp6I	GTAC	3 cut(s)	375, 382, 656
CviAII	CATG	2 cut(s)	110, 954
CviQI	GTAC	3 cut(s)	375, 382, 656
DdeI	CTNAG	3 cut(s)	371, 621, 846
DpnI	GATC	3 cut(s)	389, 415, 764
DpnII	GATC	3 cut(s)	387, 413, 762
Eam1104I	CTCTTC	1 cut(s)	846
EarI	CTCTTC	1 cut(s)	846
Ecl136II	GAGCTC	1 cut(s)	646
Eco24I	GRGCYC	1 cut(s)	648
Eco53kI	GAGCTC	1 cut(s)	646
Eco57I	CTGAAG	4 cut(s)	12, 504, 821, 854
Eco81I	CCTNAGG	1 cut(s)	846
Eco88I	CYCGRG	1 cut(s)	875
EcoICRI	GAGCTC	1 cut(s)	646
EcoRI	GAATTC	2 cut(s)	206, 236
EcoRII	CCWGG	1 cut(s)	703
EcoT38I	GRGCYC	1 cut(s)	648
FaeI	CATG	2 cut(s)	113, 957
FaiI	YATR	5 cut(s)	77, 111, 459, 894, 955
FatI	CATG	2 cut(s)	109, 953
Fnu4HI	GCNGC	4 cut(s)	134, 348, 701, 740
FokI	GGATG	1 cut(s)	373
FriOI	GRGCYC	1 cut(s)	648
Fsp4HI	GCNGC	4 cut(s)	134, 348, 701, 740
FspBI	CTAG	5 cut(s)	125, 213, 243, 575, 687
FspI	TGCGCA	1 cut(s)	137
GlaI	GCGC	1 cut(s)	137
GluI	GCNGC	4 cut(s)	134, 348, 701, 740
GsaI	CCCAGC	1 cut(s)	60
HgaI	GACGC	1 cut(s)	794
HhaI	GCGC	1 cut(s)	138
Hin1II	CATG	2 cut(s)	113, 957
Hin6I	GCGC	1 cut(s)	136
HinP1I	GCGC	1 cut(s)	136
HincII	GTYRAC	1 cut(s)	96
HindII	GTYRAC	1 cut(s)	96
HindIII	AAGCTT	1 cut(s)	532
HinfI	GANTC	5 cut(s)	175, 392, 523, 838, 943
HpaI	GTTAAC	1 cut(s)	96
Hpy166II	GTNNAC	2 cut(s)	96, 710
Hpy188I	TCNGA	3 cut(s)	31, 357, 834
Hpy188III	TCNNGA	9 cut(s)	65, 125, 142, 464, 539, 776, 848, 875, 920
Hpy8I	GTNNAC	2 cut(s)	96, 710
HpyAV	CCTTC	7 cut(s)	71, 175, 299, 479, 602, 912, 920
HpyCH4III	ACNGT	1 cut(s)	501
HpyF10VI	GCNNNNNNNGC	1 cut(s)	643
HpyF3I	CTNAG	3 cut(s)	371, 621, 846
Hsp92II	CATG	2 cut(s)	113, 957
HspAI	GCGC	1 cut(s)	136
KspAI	GTTAAC	1 cut(s)	96
Kzo9I	GATC	3 cut(s)	387, 413, 762
LmnI	GCTCC	4 cut(s)	67, 152, 651, 850
Lsp1109I	GCAGC	4 cut(s)	120, 334, 687, 726
LweI	GCATC	2 cut(s)	147, 484
MaeI	CTAG	5 cut(s)	125, 213, 243, 575, 687
MalI	GATC	3 cut(s)	389, 415, 764
MboI	GATC	3 cut(s)	387, 413, 762
MboII	GAAGA	5 cut(s)	18, 44, 833, 847, 935
MflI	RGATCY	1 cut(s)	413
MhlI	GDGCHC	2 cut(s)	648, 832
MluCI	AATT	9 cut(s)	190, 206, 220, 236, 341, 404, 425, 518, 868
MlyI	GAGTC	3 cut(s)	532, 832, 937
MmeI	TCCRAC	2 cut(s)	520, 550
MnlI	CCTC	5 cut(s)	311, 351, 451, 630, 855
MroXI	GAANNNNTTC	2 cut(s)	288, 771
MseI	TTAA	4 cut(s)	45, 95, 660, 948
MspR9I	CCNGG	1 cut(s)	705
MvaI	CCWGG	1 cut(s)	705
MvnI	CGCG	1 cut(s)	819
MwoI	GCNNNNNNNGC	1 cut(s)	643
NdeII	GATC	3 cut(s)	387, 413, 762
NlaIII	CATG	2 cut(s)	113, 957
NlaIV	GGNNCC	3 cut(s)	198, 228, 415
NsbI	TGCGCA	1 cut(s)	137
PaeR7I	CTCGAG	1 cut(s)	875
PdmI	GAANNNNTTC	2 cut(s)	288, 771
PfeI	GAWTC	2 cut(s)	175, 392
PkrI	GCNGC	4 cut(s)	135, 349, 702, 741
PleI	GAGTC	3 cut(s)	531, 832, 937
PpsI	GAGTC	3 cut(s)	531, 832, 937
Psp124BI	GAGCTC	1 cut(s)	648
Psp6I	CCWGG	1 cut(s)	703
PspFI	CCCAGC	1 cut(s)	56
PspGI	CCWGG	1 cut(s)	703
PspN4I	GGNNCC	3 cut(s)	198, 228, 415
PstI	CTGCAG	1 cut(s)	744
PsuI	RGATCY	1 cut(s)	413
RsaI	GTAC	3 cut(s)	376, 383, 657
RsaNI	GTAC	3 cut(s)	375, 382, 656
SacI	GAGCTC	1 cut(s)	648
SaqAI	TTAA	4 cut(s)	45, 95, 660, 948
SatI	GCNGC	4 cut(s)	134, 348, 701, 740
Sau3AI	GATC	3 cut(s)	387, 413, 762
SchI	GAGTC	3 cut(s)	532, 832, 937
ScrFI	CCNGG	1 cut(s)	705
SduI	GDGCHC	2 cut(s)	648, 832
SfaNI	GCATC	2 cut(s)	147, 484
SfcI	CTRYAG	3 cut(s)	201, 231, 740
Sfr274I	CTCGAG	1 cut(s)	875
SlaI	CTCGAG	1 cut(s)	875
SmlI	CTYRAG	3 cut(s)	320, 722, 875
SmoI	CTYRAG	3 cut(s)	320, 722, 875
Sse9I	AATT	9 cut(s)	190, 206, 220, 236, 341, 404, 425, 518, 868
SsiI	CCGC	2 cut(s)	150, 817
SspI	AATATT	2 cut(s)	551, 665
SspMI	CTAG	5 cut(s)	125, 213, 243, 575, 687
SstI	GAGCTC	1 cut(s)	648
StyD4I	CCNGG	1 cut(s)	703
TaaI	ACNGT	1 cut(s)	501
TaqI	TCGA	4 cut(s)	390, 765, 876, 941
TaqII	GACCGA	1 cut(s)	579
TasI	AATT	9 cut(s)	190, 206, 220, 236, 341, 404, 425, 518, 868
TatI	WGTACW	2 cut(s)	374, 655
TfiI	GAWTC	2 cut(s)	175, 392
Tru1I	TTAA	4 cut(s)	45, 95, 660, 948
Tru9I	TTAA	4 cut(s)	45, 95, 660, 948
TscAI	CASTG	1 cut(s)	280
TseI	GCWGC	4 cut(s)	133, 347, 700, 739
TspDTI	ATGAA	3 cut(s)	17, 51, 710
TspRI	CASTG	1 cut(s)	280
XapI	RAATTY	5 cut(s)	190, 206, 220, 236, 425
XbaI	TCTAGA	1 cut(s)	124
XhoI	CTCGAG	1 cut(s)	875
XmnI	GAANNNNTTC	2 cut(s)	288, 771
XspI	CTAG	5 cut(s)	125, 213, 243, 575, 687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.