Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0004242

Physical Location & Seq

Genomic Coordinates Forward (+)

4585649 .. 4586338

Gene Structure 690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG033400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGACTCTAAAGTACTTGGAGATAGACAACTGTTCCTCTCTCATGTCCTTTCCAAATGGTGAGTTACCAACAAGCCTTGAGCGTCTTGAGATTAGTGATTGCCCCAATTTCCAGACATTGCCATTGAGCCTTCTCAACCTCACGAATCTTGAGACCTTGGAAATAAAGATCTGCCCCCTTCTTCAGGACTTTCCAGAGGGTGGATTGCCACCCAACATAAAGTTTGTCACAATTTCTGAATGTAAGAATCTAAAGTCTCTACCTAAATTCTTTCATAAACTCAAATGTCTTCAGAAGTTGGAGATTTCTGGCTGTCCTAGTCTCCTGTCCTTGCCAAAGCAGGGTCTGCCCAGCAGCTTAAGAGTACTTACAGTTACATATTGTGAAAAGCTTAATACCATACATCAGTGGAGACTTCACAAACTACCCTCTCTAGATGTTTTCACCATTGGTGGATTTCCTGGCCTGAACTCCTTTTCAAAAGATTATCCTCTTCCTCACACTTTAACCTCTTTAAGCATTCAAAGATTCCCAGATCTTGAATCCATATCGGAGGTGCTTGAGAATCTCACCTCACTTGAAAAGCTGAGTATCAGGGAGTGTGCTAAGCTCCAATCTTCGCCAGAGACGGGGCTACCAGCGACAATTTCTACCTTGACAATTCGGAATTGTTTGCTTCTAGAACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

229

Amino Acids

25.62

Weight (kDa)

6.22

Isoelectric Point (pI)

52.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004242)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01950 FvH4_7g01950 FvH4_7g01950 FvH4_7g01950 FvH4_7g01950
malus_domestica	MD07G1025200.v1.1
prunus_persica	Prupe.2G025700_v2.0.a1
pyrus_communis	pycom07g01950
rosa_chinensis	RchiOBHm_Chr1g0318941
rosa_multiflora	Rmu_sc0000504.1_g000032 Rmu_sc0001304.1_g000001 Rmu_sc0001304.1_g000002 Rmu_sc0001304.1_g000003 Rmu_sc0006228.1_g000001 Rmu_sc0009454.1_g000007
rosa_roxburghii	Rroxscaffold_4G00328760 Rroxscaffold_4G00328790 Rroxscaffold_4G00328810
rosa_rugosa	Rorug01G0025200 Rorug01G0025500 Rorug01G0025600
rosa_samantha	Rh1AG037200 Rh1AG037300 Rh1AG037400 Rh1BG033400 Rh1BG033800 Rh1CG036600 Rh1DG033700 Rh1DG034000
rosa_wichuraiana	Rw0G005440 Rw0G015080 Rw1G002890 Rw1G002900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	200
AcsI	RAATTY	1 cut(s)	266
AcuI	CTGAAG	2 cut(s)	167, 275
AfaI	GTAC	2 cut(s)	14, 366
AfiI	CCNNNNNNNGG	4 cut(s)	184, 200, 341, 629
AflII	CTTAAG	1 cut(s)	358
AgsI	TTSAA	4 cut(s)	480, 524, 542, 581
AjnI	CCWGG	1 cut(s)	460
AluBI	AGCT	4 cut(s)	357, 391, 586, 610
AluI	AGCT	4 cut(s)	357, 391, 586, 610
Alw26I	GTCTC	5 cut(s)	146, 261, 326, 406, 620
AlwNI	CAGNNNCTG	1 cut(s)	346
AoxI	GGCC	1 cut(s)	463
ApeKI	GCWGC	1 cut(s)	354
ApoI	RAATTY	1 cut(s)	266
AsuHPI	GGTGA	3 cut(s)	71, 436, 562
BbsI	GAAGAC	1 cut(s)	281
BbvI	GCAGC	1 cut(s)	366
BciT130I	CCWGG	1 cut(s)	462
BcoDI	GTCTC	5 cut(s)	146, 261, 326, 406, 620
BfaI	CTAG	3 cut(s)	318, 434, 680
BfrI	CTTAAG	1 cut(s)	358
BglII	AGATCT	2 cut(s)	168, 535
BisI	GCNGC	1 cut(s)	355
BlpI	GCTNAGC	1 cut(s)	606
BlsI	GCNGC	1 cut(s)	356
BmcAI	AGTACT	2 cut(s)	14, 366
Bme1390I	CCNGG	1 cut(s)	462
BmrFI	CCNGG	1 cut(s)	462
BpiI	GAAGAC	1 cut(s)	281
Bpu1102I	GCTNAGC	1 cut(s)	606
BpuEI	CTTGAG	4 cut(s)	98, 107, 170, 581
BsaI	GGTCTC	1 cut(s)	146
BsaJI	CCNNGG	1 cut(s)	156
Bsc4I	CCNNNNNNNGG	4 cut(s)	184, 200, 341, 629
Bse3DI	GCAATG	1 cut(s)	116
BseBI	CCWGG	1 cut(s)	462
BseDI	CCNNGG	1 cut(s)	156
BseLI	CCNNNNNNNGG	4 cut(s)	184, 200, 341, 629
BseMI	GCAATG	1 cut(s)	116
BseMII	CTCAG	1 cut(s)	578
BseXI	GCAGC	1 cut(s)	366
BseYI	CCCAGC	1 cut(s)	350
BshFI	GGCC	1 cut(s)	465
BslI	CCNNNNNNNGG	4 cut(s)	184, 200, 341, 629
BsmAI	GTCTC	5 cut(s)	146, 261, 326, 406, 620
BsmBI	CGTCTC	1 cut(s)	620
BsmI	GAATGC	1 cut(s)	519
BsnI	GGCC	1 cut(s)	465
Bso31I	GGTCTC	1 cut(s)	146
Bsp143I	GATC	2 cut(s)	168, 535
Bsp1720I	GCTNAGC	1 cut(s)	606
BspANI	GGCC	1 cut(s)	465
BspCNI	CTCAG	1 cut(s)	579
BspTI	CTTAAG	1 cut(s)	358
BspTNI	GGTCTC	1 cut(s)	146
BsrDI	GCAATG	1 cut(s)	116
BssECI	CCNNGG	1 cut(s)	156
BssMI	GATC	2 cut(s)	168, 535
BssT1I	CCWWGG	1 cut(s)	156
Bst2UI	CCWGG	1 cut(s)	462
Bst4CI	ACNGT	2 cut(s)	32, 373
Bst6I	CTCTTC	1 cut(s)	498
BstAFI	CTTAAG	1 cut(s)	358
BstAPI	GCANNNNNTGC	1 cut(s)	346
BstDEI	CTNAG	2 cut(s)	587, 606
BstENI	CCTNNNNNAGG	1 cut(s)	182
BstKTI	GATC	2 cut(s)	171, 538
BstMAI	GTCTC	5 cut(s)	146, 261, 326, 406, 620
BstMBI	GATC	2 cut(s)	168, 535
BstMWI	GCNNNNNNNGC	1 cut(s)	346
BstNI	CCWGG	1 cut(s)	462
BstSCI	CCNGG	1 cut(s)	460
BstV1I	GCAGC	1 cut(s)	366
BstV2I	GAAGAC	1 cut(s)	281
BstX2I	RGATCY	2 cut(s)	168, 535
BstYI	RGATCY	2 cut(s)	168, 535
BsuRI	GGCC	1 cut(s)	465
BtsIMutI	CAGTG	1 cut(s)	413
CaiI	CAGNNNCTG	1 cut(s)	346
CseI	GACGC	1 cut(s)	71
Csp6I	GTAC	2 cut(s)	13, 365
CviAII	CATG	1 cut(s)	43
CviJI	RGCY	9 cut(s)	75, 129, 312, 357, 391, 465, 586, 610, 634
CviKI_1	RGCY	9 cut(s)	75, 129, 312, 357, 391, 465, 586, 610, 634
CviQI	GTAC	2 cut(s)	13, 365
DdeI	CTNAG	2 cut(s)	587, 606
DpnI	GATC	2 cut(s)	170, 537
DpnII	GATC	2 cut(s)	168, 535
Eam1104I	CTCTTC	1 cut(s)	498
EarI	CTCTTC	1 cut(s)	498
Eco130I	CCWWGG	1 cut(s)	156
Eco31I	GGTCTC	1 cut(s)	146
Eco57I	CTGAAG	2 cut(s)	167, 275
EcoNI	CCTNNNNNAGG	1 cut(s)	182
EcoRII	CCWGG	1 cut(s)	460
EcoT14I	CCWWGG	1 cut(s)	156
ErhI	CCWWGG	1 cut(s)	156
Esp3I	CGTCTC	1 cut(s)	620
FaeI	CATG	1 cut(s)	46
FaiI	YATR	6 cut(s)	44, 218, 276, 379, 401, 548
FatI	CATG	1 cut(s)	42
Fnu4HI	GCNGC	1 cut(s)	355
Fsp4HI	GCNGC	1 cut(s)	355
FspBI	CTAG	3 cut(s)	318, 434, 680
GluI	GCNGC	1 cut(s)	355
GsaI	CCCAGC	1 cut(s)	354
HaeIII	GGCC	1 cut(s)	465
HgaI	GACGC	1 cut(s)	71
Hin1II	CATG	1 cut(s)	46
HindIII	AAGCTT	1 cut(s)	389
HinfI	GANTC	6 cut(s)	4, 145, 247, 528, 542, 565
HphI	GGTGA	3 cut(s)	71, 436, 562
Hpy188I	TCNGA	4 cut(s)	238, 294, 553, 666
Hpy188III	TCNNGA	9 cut(s)	86, 112, 142, 149, 185, 194, 434, 539, 680
HpyAV	CCTTC	2 cut(s)	140, 188
HpyCH4III	ACNGT	2 cut(s)	32, 373
HpyF10VI	GCNNNNNNNGC	1 cut(s)	346
HpyF3I	CTNAG	2 cut(s)	587, 606
Hsp92II	CATG	1 cut(s)	46
Kzo9I	GATC	2 cut(s)	168, 535
LmnI	GCTCC	1 cut(s)	615
Lsp1109I	GCAGC	1 cut(s)	366
MaeI	CTAG	3 cut(s)	318, 434, 680
MaeIII	GTNAC	3 cut(s)	63, 226, 373
MalI	GATC	2 cut(s)	170, 537
MboI	GATC	2 cut(s)	168, 535
MboII	GAAGA	4 cut(s)	173, 281, 485, 609
MflI	RGATCY	2 cut(s)	168, 535
MluCI	AATT	6 cut(s)	106, 231, 266, 645, 660, 667
MmeI	TCCRAC	1 cut(s)	279
MnlI	CCTC	9 cut(s)	46, 149, 190, 439, 501, 507, 520, 547, 583
MseI	TTAA	4 cut(s)	359, 393, 506, 515
MspCI	CTTAAG	1 cut(s)	358
MspR9I	CCNGG	1 cut(s)	462
Mva1269I	GAATGC	1 cut(s)	519
MvaI	CCWGG	1 cut(s)	462
MwoI	GCNNNNNNNGC	1 cut(s)	346
NdeII	GATC	2 cut(s)	168, 535
NlaIII	CATG	1 cut(s)	46
NmuCI	GTSAC	1 cut(s)	226
PctI	GAATGC	1 cut(s)	519
PfeI	GAWTC	5 cut(s)	145, 247, 528, 542, 565
PflMI	CCANNNNNTGG	1 cut(s)	200
PkrI	GCNGC	1 cut(s)	356
Psp6I	CCWGG	1 cut(s)	460
PspFI	CCCAGC	1 cut(s)	350
PspGI	CCWGG	1 cut(s)	460
PstNI	CAGNNNCTG	1 cut(s)	346
PsuI	RGATCY	2 cut(s)	168, 535
RsaI	GTAC	2 cut(s)	14, 366
RsaNI	GTAC	2 cut(s)	13, 365
SaqAI	TTAA	4 cut(s)	359, 393, 506, 515
SatI	GCNGC	1 cut(s)	355
Sau3AI	GATC	2 cut(s)	168, 535
ScaI	AGTACT	2 cut(s)	14, 366
ScrFI	CCNGG	1 cut(s)	462
SmlI	CTYRAG	5 cut(s)	77, 86, 149, 358, 560
SmoI	CTYRAG	5 cut(s)	77, 86, 149, 358, 560
Sse9I	AATT	6 cut(s)	106, 231, 266, 645, 660, 667
SspMI	CTAG	3 cut(s)	318, 434, 680
StyD4I	CCNGG	1 cut(s)	460
StyI	CCWWGG	1 cut(s)	156
TaaI	ACNGT	2 cut(s)	32, 373
TasI	AATT	6 cut(s)	106, 231, 266, 645, 660, 667
TatI	WGTACW	2 cut(s)	12, 364
TfiI	GAWTC	5 cut(s)	145, 247, 528, 542, 565
Tru1I	TTAA	4 cut(s)	359, 393, 506, 515
Tru9I	TTAA	4 cut(s)	359, 393, 506, 515
TscAI	CASTG	1 cut(s)	413
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	1 cut(s)	354
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	1 cut(s)	263
TspRI	CASTG	1 cut(s)	413
Van91I	CCANNNNNTGG	1 cut(s)	200
Vha464I	CTTAAG	1 cut(s)	358
XagI	CCTNNNNNAGG	1 cut(s)	182
XapI	RAATTY	1 cut(s)	266
XbaI	TCTAGA	2 cut(s)	433, 679
XspI	CTAG	3 cut(s)	318, 434, 680
ZrmI	AGTACT	2 cut(s)	14, 366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.