Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006228.1

Orthogroup ID

OG0004242

Physical Location & Seq

Genomic Coordinates Reverse (-)

1483 .. 4593

Gene Structure 3111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006228.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3111 bp

atgcctattgttcgagcacttgaatcttcttctgtaagcatcctccttaacaagttggccactaaagatgtcatagatttcttcctcaagtggaaaattgatgactccctgcgagaaaagctcaagagaaacctgcttgttattcatgcagttctcaatcatgctgaggagaagcaagtccgggattcaaatgtcaaagcttggctggaggacgtcagagttgcagcttatgatgctgaggacatattggatgacatcgccaatgatgctctccaatcacaaaacagcaaacatgaggtatggaattctaagatcaaagaagggatagactttaagagcaaagacgttgctaatactcttaatccttttagagaacgtgtagagtcgaagatgataaagattatagatatattggaagagattgcaaaacagaaagatatacttcgtttgagagaagattctggcggtatagaatcaggttttgacagattggccacgactccaatgttgggtgatgaatctcatgtttatggtagagaatctgataaggaggagataattactttgctgaatttgggtggaaatgatgatggggtttctataatcccagttgtaggcatgggaggtattgggaagactacacttgctcagcttgtgtataatgatgctaatgtgagtagccattttgatttgagagcctgggcttgtgtctctgatgtatttgatgtgcaaaggataacaaaaacacttgttgagtctgtgactaaatcaagttgtagcacaaacaatttggagttgcttcaagaacaactgaaaatacggttgaaggacaagaaatttctctttgttctggatgatgtctggaacgagaagtatgaaagctgggatcagttaagagtccccttcacagttggtgcaccagggagtaaaatcatgatcacgacacgaaacaaaacagttgcatcacttatggggactgttcctacttactgtttggaggggctttcggacagtgattgttggttattattcgaacaaattgtgtttaagaacaggaatctagatgcctatccaaagttgaaagtgattggcaggaaaatagcagataagtgtaaagggttgcctttagctgcaaaggcactaggaggtctcctgcgtgctgaaccagaactagatgagaattactggaatgatatcttgaatagcaaactttggaaactggcagacaacactgttctaccagctctaagattaagctaccatcacctccctgggcatttgaagcgctgttttgcttattgctcgatgtttcctaaggactatgaatatgagagggagatgttaatcttgttatggatggcagagggttttgtgccagagccagaaggaaatcaacgaatcgaagatgtagctggaagatatgtttcagattttttatcaaggtccttcttccaacacaccagtgacgagtcacgactggtaatgcatgacctcatacatgatcttgcacaatctgtgtctggcaaaacatttgttaggttggaggaaaattcagaggaccataaaaggtctacaaaagctcggcacttgtcatatacccgtggatctgaagatgtatttcagaaatttgaggcattcagtgaggtggattgtttacgaacctttctaccactagacccattgcgaggattcaatatgagtagcttaactgacaaggttccttgtgatatgatgccaaaattaagattcctgcgggtgctatcctttagtggttatctcataaaaaagtttccagattcaattggcaacttgaagcatctgcgatacctcaatctttctcattgtcaaatagaagagctacctgagccaacaagcagtctatacaatctgcagacattaattttattcagttgtcgatcgcttaccatgctgcctgcagacatgggaaacctaaggaatttacagcatctcaatattcagggaactaggctgaaaagtatgcctttgggaatgggaagattggttaaccttcaaatactgtcagattttattgtggggaaagccatgggaaaagggattgcagaattgaaggacttgtcacatcttcgaggctcagtttctattttgtgtttgcatgatgtcggcagtgttagggatgcaattgaggccagattagaggttaagaagcaccttgatgatttagttttggaatggagcagcagtactgatggttcgcgaaatgaagagatcgagacagaggtacttgatgcactgcagcctcatgaaaacctgaagaaactcaccattaagtattatggaggtacagaatttccatattggatggggaatcctttgttcactaacatggcgtacttgcatctctatggttgcataaaatgcacatctttaccaccccttggccaactaccttctcttaaagatctcataattgaagcaatgcatggaatacagcgtgtaggaatggatttttttggggatgatgatggttccacaatttttttcccctctttagagactttaaaatttgaggacatgaaagaatgggagaaatggtcatcttcagaagatgaaaggcttaaaggatttcccagccttcgggagctttccatatttagatgtcccaagttaacaaagtttacacatggatttgcttctctagaaaagctgcgcatcaagaactgtagagcaataactaccttctcacagaatcctgcacttgggaatttggaacctgtagaattccctagcctgcaactgcttgttcttgttggttgcagtgagcttgaaaaccttcctttttccctccctttgttgaaagtgcttgagatagaaggttgtgaaaaattggctgcacttccgaggatggtggaacttagtagattgtacctgatcgattcaaatgctgaattacttggacggaagatggaatttagctcactgacctctttgcacctaactcatattccacatgttaagcatctacctgaaggctttatccaacagtctgcaaaacttgaagaattgagtcttacaggctttcctgaccttgaatatttggcagatgaccgagttggaatatttggcagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

1036

Amino Acids

117.58

Weight (kDa)

5.79

Isoelectric Point (pI)

45.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004242)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01950 FvH4_7g01950 FvH4_7g01950 FvH4_7g01950 FvH4_7g01950
malus_domestica	MD07G1025200.v1.1
prunus_persica	Prupe.2G025700_v2.0.a1
pyrus_communis	pycom07g01950
rosa_chinensis	RchiOBHm_Chr1g0318941
rosa_multiflora	Rmu_sc0000504.1_g000032 Rmu_sc0001304.1_g000001 Rmu_sc0001304.1_g000002 Rmu_sc0001304.1_g000003 Rmu_sc0006228.1_g000001 Rmu_sc0009454.1_g000007
rosa_roxburghii	Rroxscaffold_4G00328760 Rroxscaffold_4G00328790 Rroxscaffold_4G00328810
rosa_rugosa	Rorug01G0025200 Rorug01G0025500 Rorug01G0025600
rosa_samantha	Rh1AG037200 Rh1AG037300 Rh1AG037400 Rh1BG033400 Rh1BG033800 Rh1CG036600 Rh1DG033700 Rh1DG034000
rosa_wichuraiana	Rw0G005440 Rw0G015080 Rw1G002890 Rw1G002900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	216
Acc16I	TGCGCA	1 cut(s)	2690
Acc36I	ACCTGC	1 cut(s)	141
AccB7I	CCANNNNNTGG	1 cut(s)	2417
AccI	GTMKAC	1 cut(s)	1571
AccII	CGCG	1 cut(s)	2236
AciI	CCGC	2 cut(s)	465, 1753
AclWI	GGATC	2 cut(s)	894, 1612
AcoI	YGGCCR	3 cut(s)	57, 492, 2419
AcuI	CTGAAG	4 cut(s)	1629, 2312, 2565, 3027
AcyI	GRCGYC	1 cut(s)	213
AfaI	GTAC	5 cut(s)	2224, 2262, 2323, 2372, 2906
AfeI	AGCGCT	1 cut(s)	1286
AfiI	CCNNNNNNNGG	6 cut(s)	509, 614, 1685, 2417, 2616, 2738
AflIII	ACRYGT	2 cut(s)	376, 2989
AjnI	CCWGG	3 cut(s)	698, 919, 1270
AleI	CACNNNNGTG	1 cut(s)	1461
Alw21I	GWGCWC	2 cut(s)	19, 919
Alw26I	GTCTC	4 cut(s)	715, 1154, 2246, 2528
Alw44I	GTGCAC	1 cut(s)	915
AlwI	GGATC	2 cut(s)	894, 1612
Aor51HI	AGCGCT	1 cut(s)	1286
AoxI	GGCC	4 cut(s)	57, 492, 2166, 2419
ApaLI	GTGCAC	1 cut(s)	915
ApeKI	GCWGC	7 cut(s)	224, 1130, 1930, 2217, 2275, 2686, 2870
AseI	ATTAAT	1 cut(s)	1898
Asp700I	GAANNNNTTC	1 cut(s)	2811
AspLEI	GCGC	2 cut(s)	1287, 2691
AspS9I	GGNCC	2 cut(s)	1443, 1558
AsuC2I	CCSGG	1 cut(s)	182
AsuHPI	GGTGA	3 cut(s)	524, 1256, 2293
AsuII	TTCGAA	1 cut(s)	1032
AvaII	GGWCC	2 cut(s)	1443, 1558
AxyI	CCTNAGG	2 cut(s)	1314, 1952
BaeGI	GKGCMC	1 cut(s)	919
BalI	TGGCCA	3 cut(s)	59, 494, 2421
BbsI	GAAGAC	1 cut(s)	641
Bbv12I	GWGCWC	2 cut(s)	19, 919
BbvCI	CCTCAGC	2 cut(s)	165, 237
BbvI	GCAGC	7 cut(s)	236, 1117, 1917, 2229, 2287, 2673, 2857
BccI	CCATC	8 cut(s)	584, 1269, 1351, 2222, 2335, 2498, 2878, 2938
BcgI	CGANNNNNNTGC	2 cut(s)	2903, 2937
BciT130I	CCWGG	3 cut(s)	700, 921, 1272
BclI	TGATCA	1 cut(s)	936
BcnI	CCSGG	1 cut(s)	182
BcoDI	GTCTC	4 cut(s)	715, 1154, 2246, 2528
BfaI	CTAG	7 cut(s)	1061, 1142, 1172, 1673, 1986, 2678, 2766
BfmI	CTRYAG	5 cut(s)	1889, 1935, 2273, 2701, 2754
BfoI	RGCGCY	1 cut(s)	1288
BfuAI	ACCTGC	1 cut(s)	141
BglII	AGATCT	1 cut(s)	2440
BisI	GCNGC	7 cut(s)	225, 1131, 1931, 2218, 2276, 2687, 2871
BlpI	GCTNAGC	1 cut(s)	648
BlsI	GCNGC	7 cut(s)	226, 1132, 1932, 2219, 2277, 2688, 2872
BmcAI	AGTACT	1 cut(s)	2224
Bme1390I	CCNGG	4 cut(s)	182, 700, 921, 1272
Bme18I	GGWCC	2 cut(s)	1443, 1558
BmgT120I	GGNCC	2 cut(s)	1443, 1558
BmiI	GGNNCC	3 cut(s)	1719, 2509, 2751
BmrFI	CCNGG	4 cut(s)	182, 700, 921, 1272
BmrI	ACTGGG	1 cut(s)	602
BmuI	ACTGGG	1 cut(s)	602
BpiI	GAAGAC	1 cut(s)	641
BplI	GAGNNNNNCTC	2 cut(s)	105, 137
BpmI	CTGGAG	1 cut(s)	227
Bpu10I	CCTNAGC	3 cut(s)	165, 237, 1863
Bpu1102I	GCTNAGC	1 cut(s)	648
Bpu14I	TTCGAA	1 cut(s)	1032
BpuEI	CTTGAG	3 cut(s)	71, 107, 2864
BpuMI	CCSGG	1 cut(s)	182
Bsa29I	ATCGAT	1 cut(s)	2913
BsaBI	GATNNNNATC	2 cut(s)	1068, 1343
BsaHI	GRCGYC	1 cut(s)	213
BsaI	GGTCTC	1 cut(s)	1154
BsaJI	CCNNGG	8 cut(s)	699, 920, 1270, 1271, 1600, 2064, 2416, 2879
BsaXI	ACNNNNNCTCC	4 cut(s)	2206, 2236, 2558, 2588
Bsc4I	CCNNNNNNNGG	6 cut(s)	509, 614, 1685, 2417, 2616, 2738
Bse1I	ACTGG	5 cut(s)	608, 1190, 1224, 1461, 1482
Bse21I	CCTNAGG	2 cut(s)	1314, 1952
Bse3DI	GCAATG	2 cut(s)	1679, 2463
Bse8I	GATNNNNATC	2 cut(s)	1068, 1343
BseBI	CCWGG	3 cut(s)	700, 921, 1272
BseCI	ATCGAT	1 cut(s)	2913
BseDI	CCNNGG	8 cut(s)	699, 920, 1270, 1271, 1600, 2064, 2416, 2879
BseGI	GGATG	8 cut(s)	39, 256, 859, 1362, 2161, 2346, 2503, 2889
BseJI	GATNNNNATC	2 cut(s)	1068, 1343
BseLI	CCNNNNNNNGG	6 cut(s)	509, 614, 1685, 2417, 2616, 2738
BseMI	GCAATG	2 cut(s)	1679, 2463
BseMII	CTCAG	5 cut(s)	156, 228, 662, 1854, 2127
BseNI	ACTGG	5 cut(s)	608, 1190, 1224, 1461, 1482
BseRI	GAGGAG	2 cut(s)	182, 566
BseSI	GKGCMC	1 cut(s)	919
BseXI	GCAGC	7 cut(s)	236, 1117, 1917, 2229, 2287, 2673, 2857
BseYI	CCCAGC	2 cut(s)	882, 2609
BsgI	GTGCAG	2 cut(s)	2718, 2856
Bsh1236I	CGCG	1 cut(s)	2236
Bsh1285I	CGRYCG	1 cut(s)	1919
BshFI	GGCC	4 cut(s)	59, 494, 2168, 2421
BshVI	ATCGAT	1 cut(s)	2913
BsiEI	CGRYCG	1 cut(s)	1919
BsiHKAI	GWGCWC	2 cut(s)	19, 919
BsiSI	CCGG	1 cut(s)	181
BslFI	GGGAC	3 cut(s)	884, 988, 2625
BslI	CCNNNNNNNGG	6 cut(s)	509, 614, 1685, 2417, 2616, 2738
BsmAI	GTCTC	4 cut(s)	715, 1154, 2246, 2528
BsmFI	GGGAC	3 cut(s)	884, 988, 2625
BsmI	GAATGC	1 cut(s)	1634
BsnI	GGCC	4 cut(s)	59, 494, 2168, 2421
Bso31I	GGTCTC	1 cut(s)	1154
Bsp119I	TTCGAA	1 cut(s)	1032
Bsp1286I	GDGCHC	2 cut(s)	19, 919
Bsp143I	GATC	9 cut(s)	312, 886, 936, 1501, 1604, 1916, 2247, 2440, 2910
Bsp1720I	GCTNAGC	1 cut(s)	648
Bsp19I	CCATGG	1 cut(s)	2064
Bsp68I	TCGCGA	1 cut(s)	2236
BspACI	CCGC	2 cut(s)	465, 1753
BspANI	GGCC	4 cut(s)	59, 494, 2168, 2421
BspCNI	CTCAG	5 cut(s)	157, 229, 661, 1855, 2126
BspDI	ATCGAT	1 cut(s)	2913
BspFNI	CGCG	1 cut(s)	2236
BspHI	TCATGA	2 cut(s)	933, 2281
BspLI	GGNNCC	3 cut(s)	1719, 2509, 2751
BspMAI	CTGCAG	3 cut(s)	1893, 1939, 2277
BspMI	ACCTGC	1 cut(s)	141
BspPI	GGATC	2 cut(s)	894, 1612
BspQI	GCTCTTC	1 cut(s)	1848
BspT104I	TTCGAA	1 cut(s)	1032
BspTNI	GGTCTC	1 cut(s)	1154
BsrDI	GCAATG	2 cut(s)	1679, 2463
BsrI	ACTGG	5 cut(s)	608, 1190, 1224, 1461, 1482
BssECI	CCNNGG	8 cut(s)	699, 920, 1270, 1271, 1600, 2064, 2416, 2879
BssMI	GATC	9 cut(s)	312, 886, 936, 1501, 1604, 1916, 2247, 2440, 2910
BssNI	GRCGYC	1 cut(s)	213
BssT1I	CCWWGG	2 cut(s)	2064, 2416
Bst2UI	CCWGG	3 cut(s)	700, 921, 1272
Bst6I	CTCTTC	3 cut(s)	411, 1848, 2238
BstACI	GRCGYC	1 cut(s)	213
BstAPI	GCANNNNNTGC	1 cut(s)	2397
BstBI	TTCGAA	1 cut(s)	1032
BstC8I	GCNNGC	3 cut(s)	1158, 1935, 2771
BstDSI	CCRYGG	2 cut(s)	1600, 2064
BstF5I	GGATG	8 cut(s)	39, 256, 859, 1362, 2161, 2346, 2503, 2889
BstFNI	CGCG	1 cut(s)	2236
BstH2I	RGCGCY	1 cut(s)	1288
BstHHI	GCGC	2 cut(s)	1287, 2691
BstKTI	GATC	9 cut(s)	315, 889, 939, 1504, 1607, 1919, 2250, 2443, 2913
BstMAI	GTCTC	4 cut(s)	715, 1154, 2246, 2528
BstMBI	GATC	9 cut(s)	312, 886, 936, 1501, 1604, 1916, 2247, 2440, 2910
BstMCI	CGRYCG	1 cut(s)	1919
BstMWI	GCNNNNNNNGC	9 cut(s)	118, 233, 266, 1136, 1282, 1864, 1927, 2165, 2397
BstNI	CCWGG	3 cut(s)	700, 921, 1272
BstNSI	RCATGY	1 cut(s)	2993
BstSCI	CCNGG	4 cut(s)	180, 698, 919, 1270
BstSFI	CTRYAG	5 cut(s)	1889, 1935, 2273, 2701, 2754
BstSLI	GKGCMC	1 cut(s)	919
BstUI	CGCG	1 cut(s)	2236
BstV1I	GCAGC	7 cut(s)	236, 1117, 1917, 2229, 2287, 2673, 2857
BstV2I	GAAGAC	1 cut(s)	641
BstX2I	RGATCY	2 cut(s)	1604, 2440
BstYI	RGATCY	2 cut(s)	1604, 2440
Bsu15I	ATCGAT	1 cut(s)	2913
Bsu36I	CCTNAGG	2 cut(s)	1314, 1952
BsuRI	GGCC	4 cut(s)	59, 494, 2168, 2421
BsuTUI	ATCGAT	1 cut(s)	2913
BtgI	CCRYGG	2 cut(s)	1600, 2064
BtgZI	GCGATG	1 cut(s)	241
BtsCI	GGATG	8 cut(s)	39, 256, 859, 1362, 2161, 2346, 2503, 2889
BtsI	GCAGTG	3 cut(s)	2152, 2270, 2803
BtsIMutI	CAGTG	8 cut(s)	1018, 1230, 1468, 1645, 2152, 2270, 2803, 2957
BtuMI	TCGCGA	1 cut(s)	2236
BveI	ACCTGC	1 cut(s)	141
Cac8I	GCNNGC	3 cut(s)	1158, 1935, 2771
CciI	TCATGA	2 cut(s)	933, 2281
CfoI	GCGC	2 cut(s)	1287, 2691
Cfr13I	GGNCC	2 cut(s)	1443, 1558
ClaI	ATCGAT	1 cut(s)	2913
Csp6I	GTAC	5 cut(s)	2223, 2261, 2322, 2371, 2905
CviQI	GTAC	5 cut(s)	2223, 2261, 2322, 2371, 2905
DpnI	GATC	9 cut(s)	314, 888, 938, 1503, 1606, 1918, 2249, 2442, 2912
DpnII	GATC	9 cut(s)	312, 886, 936, 1501, 1604, 1916, 2247, 2440, 2910
DraI	TTTAAA	1 cut(s)	2541
EaeI	YGGCCR	3 cut(s)	57, 492, 2419
Eam1104I	CTCTTC	3 cut(s)	411, 1848, 2238
EarI	CTCTTC	3 cut(s)	411, 1848, 2238
Eco130I	CCWWGG	2 cut(s)	2064, 2416
Eco31I	GGTCTC	1 cut(s)	1154
Eco32I	GATATC	1 cut(s)	1195
Eco47I	GGWCC	2 cut(s)	1443, 1558
Eco47III	AGCGCT	1 cut(s)	1286
Eco57I	CTGAAG	4 cut(s)	1629, 2312, 2565, 3027
Eco81I	CCTNAGG	2 cut(s)	1314, 1952
EcoO109I	RGGNCCY	1 cut(s)	1443
EcoRI	GAATTC	2 cut(s)	304, 2759
EcoRII	CCWGG	3 cut(s)	698, 919, 1270
EcoRV	GATATC	1 cut(s)	1195
EcoT14I	CCWWGG	2 cut(s)	2064, 2416
EcoT22I	ATGCAT	2 cut(s)	1488, 2463
ErhI	CCWWGG	2 cut(s)	2064, 2416
FalI	AAGNNNNNCTT	4 cut(s)	426, 458, 1987, 2019
FaqI	GGGAC	3 cut(s)	884, 988, 2625
FauI	CCCGC	1 cut(s)	1746
FbaI	TGATCA	1 cut(s)	936
FblI	GTMKAC	1 cut(s)	1571
Fnu4HI	GCNGC	7 cut(s)	225, 1131, 1931, 2218, 2276, 2687, 2871
FokI	GGATG	8 cut(s)	26, 263, 866, 1369, 2168, 2353, 2510, 2896
Fsp4HI	GCNGC	7 cut(s)	225, 1131, 1931, 2218, 2276, 2687, 2871
FspBI	CTAG	7 cut(s)	1061, 1142, 1172, 1673, 1986, 2678, 2766
FspI	TGCGCA	1 cut(s)	2690
GlaI	GCGC	2 cut(s)	1286, 2690
GluI	GCNGC	7 cut(s)	225, 1131, 1931, 2218, 2276, 2687, 2871
GsaI	CCCAGC	2 cut(s)	886, 2613
GsuI	CTGGAG	1 cut(s)	227
HaeII	RGCGCY	1 cut(s)	1288
HaeIII	GGCC	4 cut(s)	59, 494, 2168, 2421
HapII	CCGG	1 cut(s)	181
HhaI	GCGC	2 cut(s)	1287, 2691
Hin1I	GRCGYC	1 cut(s)	213
Hin6I	GCGC	2 cut(s)	1285, 2689
HinP1I	GCGC	2 cut(s)	1285, 2689
HincII	GTYRAC	2 cut(s)	2026, 2649
HindII	GTYRAC	2 cut(s)	2026, 2649
HindIII	AAGCTT	1 cut(s)	198
HpaI	GTTAAC	2 cut(s)	2026, 2649
HpaII	CCGG	1 cut(s)	181
HphI	GGTGA	3 cut(s)	524, 1256, 2293
Hpy166II	GTNNAC	7 cut(s)	917, 1572, 1655, 2026, 2358, 2649, 2658
Hpy8I	GTNNAC	7 cut(s)	917, 1572, 1655, 2026, 2358, 2649, 2658
HpyCH4IV	ACGT	3 cut(s)	213, 345, 376
HpyF10VI	GCNNNNNNNGC	9 cut(s)	118, 233, 266, 1136, 1282, 1864, 1927, 2165, 2397
HpySE526I	ACGT	3 cut(s)	213, 345, 376
Hsp92I	GRCGYC	1 cut(s)	213
HspAI	GCGC	2 cut(s)	1285, 2689
Ksp22I	TGATCA	1 cut(s)	936
KspAI	GTTAAC	2 cut(s)	2026, 2649
Kzo9I	GATC	9 cut(s)	312, 886, 936, 1501, 1604, 1916, 2247, 2440, 2910
LguI	GCTCTTC	1 cut(s)	1848
LmnI	GCTCC	2 cut(s)	2214, 2620
Lsp1109I	GCAGC	7 cut(s)	236, 1117, 1917, 2229, 2287, 2673, 2857
MaeI	CTAG	7 cut(s)	1061, 1142, 1172, 1673, 1986, 2678, 2766
MaeII	ACGT	3 cut(s)	213, 345, 376
MaeIII	GTNAC	4 cut(s)	760, 1463, 1470, 2097
MalI	GATC	9 cut(s)	314, 888, 938, 1503, 1606, 1918, 2249, 2442, 2912
MboI	GATC	9 cut(s)	312, 886, 936, 1501, 1604, 1916, 2247, 2440, 2910
MfeI	CAATTG	2 cut(s)	1800, 2160
MflI	RGATCY	2 cut(s)	1604, 2440
MhlI	GDGCHC	2 cut(s)	19, 919
MlsI	TGGCCA	3 cut(s)	59, 494, 2421
MluNI	TGGCCA	3 cut(s)	59, 494, 2421
MlyI	GAGTC	7 cut(s)	98, 392, 493, 764, 906, 1478, 3055
MmeI	TCCRAC	4 cut(s)	1477, 1521, 3043, 3073
Mox20I	TGGCCA	3 cut(s)	59, 494, 2421
Mph1103I	ATGCAT	2 cut(s)	1488, 2463
MroXI	GAANNNNTTC	1 cut(s)	2811
MscI	TGGCCA	3 cut(s)	59, 494, 2421
MslI	CAYNNNNRTG	5 cut(s)	528, 1461, 2193, 2363, 2382
Msp20I	TGGCCA	3 cut(s)	59, 494, 2421
MspI	CCGG	1 cut(s)	181
MspR9I	CCNGG	4 cut(s)	182, 700, 921, 1272
MunI	CAATTG	2 cut(s)	1800, 2160
Mva1269I	GAATGC	1 cut(s)	1634
MvaI	CCWGG	3 cut(s)	700, 921, 1272
MvnI	CGCG	1 cut(s)	2236
MwoI	GCNNNNNNNGC	9 cut(s)	118, 233, 266, 1136, 1282, 1864, 1927, 2165, 2397
NciI	CCSGG	1 cut(s)	182
NcoI	CCATGG	1 cut(s)	2064
NdeII	GATC	9 cut(s)	312, 886, 936, 1501, 1604, 1916, 2247, 2440, 2910
NlaIV	GGNNCC	3 cut(s)	1719, 2509, 2751
NmeAIII	GCCGAG	1 cut(s)	1561
NmuCI	GTSAC	4 cut(s)	760, 1463, 1470, 2097
NruI	TCGCGA	1 cut(s)	2236
NsbI	TGCGCA	1 cut(s)	2690
NsiI	ATGCAT	2 cut(s)	1488, 2463
NspI	RCATGY	1 cut(s)	2993
NspV	TTCGAA	1 cut(s)	1032
OliI	CACNNNNGTG	1 cut(s)	1461
PagI	TCATGA	2 cut(s)	933, 2281
PasI	CCCWGGG	1 cut(s)	1271
PciI	ACATGT	1 cut(s)	2989
PciSI	GCTCTTC	1 cut(s)	1848
PctI	GAATGC	1 cut(s)	1634
PdmI	GAANNNNTTC	1 cut(s)	2811
PflMI	CCANNNNNTGG	1 cut(s)	2417
PfoI	TCCNGGA	1 cut(s)	180
PkrI	GCNGC	7 cut(s)	226, 1132, 1932, 2219, 2277, 2688, 2872
Ple19I	CGATCG	1 cut(s)	1919
PleI	GAGTC	7 cut(s)	98, 391, 493, 763, 905, 1477, 3054
PpsI	GAGTC	7 cut(s)	98, 391, 493, 763, 905, 1477, 3054
PpuMI	RGGWCCY	1 cut(s)	1443
PscI	ACATGT	1 cut(s)	2989
PshBI	ATTAAT	1 cut(s)	1898
Psp5II	RGGWCCY	1 cut(s)	1443
Psp6I	CCWGG	3 cut(s)	698, 919, 1270
PspFI	CCCAGC	2 cut(s)	882, 2609
PspGI	CCWGG	3 cut(s)	698, 919, 1270
PspN4I	GGNNCC	3 cut(s)	1719, 2509, 2751
PspPI	GGNCC	2 cut(s)	1443, 1558
PspPPI	RGGWCCY	1 cut(s)	1443
PsrI	GAACNNNNNNTAC	2 cut(s)	2215, 2247
PstI	CTGCAG	3 cut(s)	1893, 1939, 2277
PsuI	RGATCY	2 cut(s)	1604, 2440
PvuI	CGATCG	1 cut(s)	1919
RruI	TCGCGA	1 cut(s)	2236
RsaI	GTAC	5 cut(s)	2224, 2262, 2323, 2372, 2906
RsaNI	GTAC	5 cut(s)	2223, 2261, 2322, 2371, 2905
RseI	CAYNNNNRTG	5 cut(s)	528, 1461, 2193, 2363, 2382
SapI	GCTCTTC	1 cut(s)	1848
SatI	GCNGC	7 cut(s)	225, 1131, 1931, 2218, 2276, 2687, 2871
Sau3AI	GATC	9 cut(s)	312, 886, 936, 1501, 1604, 1916, 2247, 2440, 2910
Sau96I	GGNCC	2 cut(s)	1443, 1558
ScaI	AGTACT	1 cut(s)	2224
SchI	GAGTC	7 cut(s)	98, 392, 493, 764, 906, 1478, 3055
ScrFI	CCNGG	4 cut(s)	182, 700, 921, 1272
SduI	GDGCHC	2 cut(s)	19, 919
SfcI	CTRYAG	5 cut(s)	1889, 1935, 2273, 2701, 2754
SfuI	TTCGAA	1 cut(s)	1032
SinI	GGWCC	2 cut(s)	1443, 1558
SmiMI	CAYNNNNRTG	5 cut(s)	528, 1461, 2193, 2363, 2382
SmlI	CTYRAG	3 cut(s)	86, 122, 2843
SmoI	CTYRAG	3 cut(s)	86, 122, 2843
SsiI	CCGC	2 cut(s)	465, 1753
SspI	AATATT	3 cut(s)	1975, 3074, 3099
SspMI	CTAG	7 cut(s)	1061, 1142, 1172, 1673, 1986, 2678, 2766
StyD4I	CCNGG	4 cut(s)	180, 698, 919, 1270
StyI	CCWWGG	2 cut(s)	2064, 2416
TaiI	ACGT	3 cut(s)	216, 348, 379
TaqI	TCGA	9 cut(s)	13, 386, 1032, 1304, 1401, 1915, 2107, 2250, 2913
TaqII	GACCGA	1 cut(s)	3102
TatI	WGTACW	1 cut(s)	2222
TscAI	CASTG	8 cut(s)	1018, 1237, 1468, 1645, 2152, 2277, 2803, 2964
TseFI	GTSAC	4 cut(s)	760, 1463, 1470, 2097
TseI	GCWGC	7 cut(s)	224, 1130, 1930, 2217, 2275, 2686, 2870
Tsp45I	GTSAC	4 cut(s)	760, 1463, 1470, 2097
TspDTI	ATGAA	8 cut(s)	134, 531, 891, 1338, 2256, 2298, 2570, 2604
TspGWI	ACGGA	1 cut(s)	2953
TspRI	CASTG	8 cut(s)	1018, 1237, 1468, 1645, 2152, 2277, 2803, 2964
Van91I	CCANNNNNTGG	1 cut(s)	2417
VneI	GTGCAC	1 cut(s)	915
VpaK11BI	GGWCC	2 cut(s)	1443, 1558
VspI	ATTAAT	1 cut(s)	1898
XbaI	TCTAGA	2 cut(s)	1060, 2677
XceI	RCATGY	1 cut(s)	2993
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1268
XmiI	GTMKAC	1 cut(s)	1571
XmnI	GAANNNNTTC	1 cut(s)	2811
XspI	CTAG	7 cut(s)	1061, 1142, 1172, 1673, 1986, 2678, 2766
ZraI	GACGTC	1 cut(s)	214
ZrmI	AGTACT	1 cut(s)	2224
Zsp2I	ATGCAT	2 cut(s)	1488, 2463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.