Rmu_sc0001334.1_g000028

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001334.1
OG0004883
Physical Location & Seq
Reverse (-)
186607 .. 187122
516 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 516 bp
atgatgcagagccataatgttgtagattataatgaaaaagtggtggatggattttacgatgtgtatggaattaccttgaattcctttagacaagggaagatgccgttgttggtggaatttcgagctgtatcagtttcagataatgtcgactatgatgtcatattagttaaccggtttgttgatactgaactccaacaactcgagaaaagagactatgctgcttctctagagtggatttctcaacatggtctacttttaagtggcttgattcagaagattgctgatattgttgttggtagaatgggtggtccagttggagatgaggatgagattttaagaaggtggaaaataaggaggcatgagttgcggagttcaatgaacactatcattcttcccctcggaaaaattgatgttggactttcacgccaccgggcccttctctttaaggttttgacagtttttaaaactcaccttaattgtcaatctgaatcattggaaaattatgtgcactattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
ko04010 map04010
Pfam Domains
Protein Families
EDR1 Pkinase_Tyr

Protein Analysis

171

Amino Acids

19.71

Weight (kDa)

6.29

Isoelectric Point (pI)

51.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR1_CTR1_ARMC3_pept PF14381 5 - 152 7e-44 EDR1/CTR1/ARMC3, peptidase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 30
AasI GACNNNNNNGTC 1 cut(s) 155
AccI GTMKAC 2 cut(s) 147, 250
AciI CCGC 1 cut(s) 367
AcsI RAATTY 2 cut(s) 79, 116
AgeI ACCGGT 1 cut(s) 171
AgsI TTSAA 2 cut(s) 79, 375
AluBI AGCT 1 cut(s) 125
AluI AGCT 1 cut(s) 125
Alw21I GWGCWC 1 cut(s) 510
Alw26I GTCTC 1 cut(s) 204
Alw44I GTGCAC 1 cut(s) 506
Ama87I CYCGRG 1 cut(s) 200
AoxI GGCC 1 cut(s) 432
ApaI GGGCCC 1 cut(s) 436
ApaLI GTGCAC 1 cut(s) 506
ApeKI GCWGC 1 cut(s) 218
ApoI RAATTY 2 cut(s) 79, 116
AsiGI ACCGGT 1 cut(s) 171
AspS9I GGNCC 3 cut(s) 308, 432, 433
AsuC2I CCSGG 1 cut(s) 431
AsuHPI GGTGA 1 cut(s) 461
AvaI CYCGRG 1 cut(s) 200
AvaII GGWCC 1 cut(s) 308
BaeGI GKGCMC 2 cut(s) 436, 510
BanII GRGCYC 1 cut(s) 436
Bbv12I GWGCWC 1 cut(s) 510
BbvI GCAGC 1 cut(s) 205
BccI CCATC 1 cut(s) 41
BceAI ACGGC 1 cut(s) 88
BcnI CCSGG 1 cut(s) 431
BcoDI GTCTC 1 cut(s) 204
BfaI CTAG 1 cut(s) 227
BisI GCNGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 220
Bme1390I CCNGG 1 cut(s) 431
Bme18I GGWCC 1 cut(s) 308
BmeT110I CYCGRG 1 cut(s) 200
BmgT120I GGNCC 3 cut(s) 308, 432, 433
BmiI GGNNCC 1 cut(s) 434
BmrFI CCNGG 1 cut(s) 431
BmsI GCATC 1 cut(s) 90
BpuMI CCSGG 1 cut(s) 431
BsaJI CCNNGG 1 cut(s) 397
BsaWI WCCGGW 1 cut(s) 171
Bse118I RCCGGY 1 cut(s) 171
Bse1I ACTGG 1 cut(s) 311
BseDI CCNNGG 1 cut(s) 397
BseGI GGATG 2 cut(s) 52, 331
BseNI ACTGG 1 cut(s) 311
BseSI GKGCMC 2 cut(s) 436, 510
BseXI GCAGC 1 cut(s) 205
BshFI GGCC 1 cut(s) 434
BshTI ACCGGT 1 cut(s) 171
BsiHKAI GWGCWC 1 cut(s) 510
BsiHKCI CYCGRG 1 cut(s) 200
BsiSI CCGG 2 cut(s) 172, 430
BsmAI GTCTC 1 cut(s) 204
BsnI GGCC 1 cut(s) 434
BsoBI CYCGRG 1 cut(s) 200
Bsp120I GGGCCC 1 cut(s) 432
Bsp1286I GDGCHC 2 cut(s) 436, 510
BspACI CCGC 1 cut(s) 367
BspANI GGCC 1 cut(s) 434
BspLI GGNNCC 1 cut(s) 434
BsrFI RCCGGY 1 cut(s) 171
BsrI ACTGG 1 cut(s) 311
BssAI RCCGGY 1 cut(s) 171
BssECI CCNNGG 1 cut(s) 397
Bst4CI ACNGT 1 cut(s) 457
BstAPI GCANNNNNTGC 1 cut(s) 364
BstF5I GGATG 2 cut(s) 52, 331
BstMAI GTCTC 1 cut(s) 204
BstMWI GCNNNNNNNGC 1 cut(s) 364
BstSCI CCNGG 1 cut(s) 429
BstSLI GKGCMC 2 cut(s) 436, 510
BstV1I GCAGC 1 cut(s) 205
BsuRI GGCC 1 cut(s) 434
BtsCI GGATG 2 cut(s) 52, 331
Cfr10I RCCGGY 1 cut(s) 171
Cfr13I GGNCC 3 cut(s) 308, 432, 433
CspAI ACCGGT 1 cut(s) 171
CviAII CATG 2 cut(s) 245, 359
CviJI RGCY 4 cut(s) 12, 125, 264, 434
CviKI_1 RGCY 4 cut(s) 12, 125, 264, 434
DraI TTTAAA 1 cut(s) 463
DrdI GACNNNNNNGTC 1 cut(s) 155
DseDI GACNNNNNNGTC 1 cut(s) 155
Eco24I GRGCYC 1 cut(s) 436
Eco47I GGWCC 1 cut(s) 308
Eco88I CYCGRG 1 cut(s) 200
EcoO109I RGGNCCY 1 cut(s) 433
EcoRI GAATTC 1 cut(s) 79
EcoT38I GRGCYC 1 cut(s) 436
FaeI CATG 2 cut(s) 248, 362
FaiI YATR 9 cut(s) 15, 30, 66, 153, 161, 216, 246, 360, 504
FatI CATG 2 cut(s) 244, 358
FblI GTMKAC 2 cut(s) 147, 250
Fnu4HI GCNGC 1 cut(s) 219
FokI GGATG 2 cut(s) 59, 338
FriOI GRGCYC 1 cut(s) 436
Fsp4HI GCNGC 1 cut(s) 219
FspBI CTAG 1 cut(s) 227
GluI GCNGC 1 cut(s) 219
HaeIII GGCC 1 cut(s) 434
HapII CCGG 2 cut(s) 172, 430
Hin1II CATG 2 cut(s) 248, 362
HincII GTYRAC 2 cut(s) 148, 169
HindII GTYRAC 2 cut(s) 148, 169
HinfI GANTC 2 cut(s) 268, 488
HpaI GTTAAC 1 cut(s) 169
HpaII CCGG 2 cut(s) 172, 430
HphI GGTGA 1 cut(s) 461
Hpy166II GTNNAC 4 cut(s) 148, 169, 251, 508
Hpy188I TCNGA 4 cut(s) 139, 273, 401, 487
Hpy188III TCNNGA 2 cut(s) 202, 227
Hpy8I GTNNAC 4 cut(s) 148, 169, 251, 508
HpyAV CCTTC 2 cut(s) 333, 446
HpyCH4III ACNGT 1 cut(s) 457
HpyCH4V TGCA 2 cut(s) 7, 508
HpyF10VI GCNNNNNNNGC 1 cut(s) 364
Hsp92II CATG 2 cut(s) 248, 362
KspAI GTTAAC 1 cut(s) 169
LpnPI CCDG 3 cut(s) 185, 324, 443
Lsp1109I GCAGC 1 cut(s) 205
LweI GCATC 1 cut(s) 90
MaeI CTAG 1 cut(s) 227
MboII GAAGA 3 cut(s) 109, 286, 383
MhlI GDGCHC 2 cut(s) 436, 510
MluCI AATT 6 cut(s) 69, 79, 116, 405, 475, 499
MmeI TCCRAC 3 cut(s) 217, 295, 394
MnlI CCTC 3 cut(s) 316, 348, 407
MseI TTAA 7 cut(s) 168, 257, 335, 444, 462, 474, 514
MspI CCGG 2 cut(s) 172, 430
MspR9I CCNGG 1 cut(s) 431
MwoI GCNNNNNNNGC 1 cut(s) 364
NciI CCSGG 1 cut(s) 431
NlaIII CATG 2 cut(s) 248, 362
NlaIV GGNNCC 1 cut(s) 434
PaeR7I CTCGAG 1 cut(s) 200
PfeI GAWTC 2 cut(s) 268, 488
PinAI ACCGGT 1 cut(s) 171
PkrI GCNGC 1 cut(s) 220
PsiI TTATAA 1 cut(s) 30
PspN4I GGNNCC 1 cut(s) 434
PspOMI GGGCCC 1 cut(s) 432
PspPI GGNCC 3 cut(s) 308, 432, 433
SalI GTCGAC 1 cut(s) 146
SaqAI TTAA 7 cut(s) 168, 257, 335, 444, 462, 474, 514
SatI GCNGC 1 cut(s) 219
Sau96I GGNCC 3 cut(s) 308, 432, 433
ScrFI CCNGG 1 cut(s) 431
SduI GDGCHC 2 cut(s) 436, 510
SetI ASST 5 cut(s) 77, 127, 344, 450, 474
SfaNI GCATC 1 cut(s) 90
Sfr274I CTCGAG 1 cut(s) 200
SinI GGWCC 1 cut(s) 308
SlaI CTCGAG 1 cut(s) 200
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
Sse9I AATT 6 cut(s) 69, 79, 116, 405, 475, 499
SsiI CCGC 1 cut(s) 367
SspMI CTAG 1 cut(s) 227
StyD4I CCNGG 1 cut(s) 429
TaaI ACNGT 1 cut(s) 457
TaqI TCGA 3 cut(s) 121, 147, 201
TasI AATT 6 cut(s) 69, 79, 116, 405, 475, 499
TfiI GAWTC 2 cut(s) 268, 488
Tru1I TTAA 7 cut(s) 168, 257, 335, 444, 462, 474, 514
Tru9I TTAA 7 cut(s) 168, 257, 335, 444, 462, 474, 514
TseI GCWGC 1 cut(s) 218
TspDTI ATGAA 2 cut(s) 48, 392
VneI GTGCAC 1 cut(s) 506
VpaK11BI GGWCC 1 cut(s) 308
XapI RAATTY 2 cut(s) 79, 116
XbaI TCTAGA 1 cut(s) 226
XhoI CTCGAG 1 cut(s) 200
XmiI GTMKAC 2 cut(s) 147, 250
XspI CTAG 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.