Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001877.1

Orthogroup ID

OG0003062

Physical Location & Seq

Genomic Coordinates Forward (+)

74717 .. 81832

Gene Structure 7116 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

atggtagcaaagtcttccagtgtcatggtgactcgccaacataatcaaagtgaaatgtgtgtgtggtgttccaccacctctcctccaagactccaaggatcacgttattggccgtcgtaccaaaacacctccacttgctcaaaatgtttacgaagtccccaaagccggcaaaacattccaaaacttgcaccagcacaattttacatcgacaattttctggctcgaatcaaggagaagaagataatggccctgaagccttttgttaatcaacatgggtatgtcaatgttcctcaagaaatcaacaggctgaggtgcggggtgaactatcacgctcttaaatttcttcctgaaatagagcagatggctgatttattggcatcagggatgagaaaccgcactggaagttccaatccttatatggccctggatcttaggtttgagaagtggatggtaggtctatccttctgtgattttttggggatgctaaggtattcaaatttcggcctatttagaaatgtgactccttacattggagatgctataggaattttacttcatagacttctcagtattataaggaccgtcaggttaaagagatacttggagatgagaggtgctgatggaggaccagccttggagaagcttatgtgctttgcttgcattttgggagtggacacgtgtcctggaagtctgatcacgttttatgtgaaaattgtaaataaattgagcaagaggcaacacaccattcctcacaaggtgatattcacaaatctcattcgttttcatattctccagatccaacaaatttcatctccttccctcatttcaataaagagattgtgggctaagtatcaacaatctcgagatgaagatcttgaagagctgtgtacgattaatgctcttgttgtagcagcagtcgctgaagctgaagcttcctccggatcacgacgacggggttctcaaccgggccgtgcaccgaatgaggagcgatttaaggaatcaagagggaaaaacatgatggaagattactttgtggagcgtccagttttaagtgaagagatattccgggcaaggtacaggatgagtcacaatgtgttcaaccgcatgtccagtgatctttgtcgctatgacccgtactttgtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009664 GO:0009832 GO:0009987 GO:0010383 GO:0010393 GO:0012505 GO:0016043 GO:0016051 GO:0017144 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0052325 GO:0052546 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

381

Amino Acids

43.85

Weight (kDa)

9.67

Isoelectric Point (pI)

59.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
O-FucT	PF10250	50 - 159	2.3e-16	GDP-fucose protein O-fucosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003062)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g07951
malus_domestica	MD12G1248200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0318681 RchiOBHm_Chr1g0319091 RchiOBHm_Chr2g0125271 RchiOBHm_Chr4g0426301 RchiOBHm_Chr7g0187311
rosa_laevigata	RLG00000006896 RLG00000028895
rosa_multiflora	Rmu_sc0001747.1_g000005 Rmu_sc0001877.1_g000012 Rmu_sc0001904.1_g000006 Rmu_sc0002983.1_g000016 Rmu_sc0006382.1_g000008 Rmu_sc0007285.1_g000017
rosa_roxburghii	Rroxscaffold_1G00011350 Rroxscaffold_1G00037350 Rroxscaffold_1G00045990 Rroxscaffold_1G00049060 Rroxscaffold_1G00070310 Rroxscaffold_3G00222330 Rroxscaffold_4G00307450 Rroxscaffold_5G00385990 Rroxscaffold_6G00407860 Rroxscaffold_6G00428470
rosa_rugosa	Rorug01G0107800 Rorug03G0135100 Rorug03G0135200
rosa_samantha	Rh2AG155600 Rh2AG341400 Rh2BG161900 Rh2BG322800 Rh3BG144800 Rh3BG291400 Rh3BG291500 Rh4CG112300 Rh5DG415000
rosa_wichuraiana	Rw6G014080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	575
AccIII	TCCGGA	1 cut(s)	938
AciI	CCGC	3 cut(s)	315, 394, 1102
AclWI	GGATC	4 cut(s)	106, 435, 790, 949
AcoI	YGGCCR	1 cut(s)	110
AcsI	RAATTY	4 cut(s)	338, 496, 546, 804
AcuI	CTGAAG	3 cut(s)	272, 942, 948
AcvI	CACGTG	1 cut(s)	678
AdeI	CACNNNGTG	2 cut(s)	757, 1093
AfaI	GTAC	4 cut(s)	119, 889, 1076, 1136
AfiI	CCNNNNNNNGG	2 cut(s)	165, 530
AflIII	ACRYGT	2 cut(s)	675, 677
AgsI	TTSAA	4 cut(s)	495, 828, 878, 1099
AjnI	CCWGG	2 cut(s)	423, 682
AluBI	AGCT	4 cut(s)	643, 883, 926, 932
AluI	AGCT	4 cut(s)	643, 883, 926, 932
Alw21I	GWGCWC	1 cut(s)	976
Alw44I	GTGCAC	1 cut(s)	972
AlwI	GGATC	4 cut(s)	106, 435, 790, 949
AlwNI	CAGNNNCTG	1 cut(s)	920
Ama87I	CYCGRG	1 cut(s)	861
Aor13HI	TCCGGA	1 cut(s)	938
AoxI	GGCC	5 cut(s)	110, 246, 420, 502, 967
ApaLI	GTGCAC	1 cut(s)	972
ApeKI	GCWGC	1 cut(s)	911
ApoI	RAATTY	4 cut(s)	338, 496, 546, 804
ArsI	GACNNNNNNTTYG	1 cut(s)	1121
AseI	ATTAAT	1 cut(s)	894
AspS9I	GGNCC	5 cut(s)	247, 421, 579, 626, 967
AsuC2I	CCSGG	2 cut(s)	966, 1067
AsuHPI	GGTGA	3 cut(s)	40, 331, 769
AvaI	CYCGRG	1 cut(s)	861
AvaII	GGWCC	2 cut(s)	579, 626
BaeGI	GKGCMC	1 cut(s)	976
BbrPI	CACGTG	1 cut(s)	678
BbsI	GAAGAC	1 cut(s)	6
Bbv12I	GWGCWC	1 cut(s)	976
BbvCI	CCTCAGC	1 cut(s)	308
BbvI	GCAGC	1 cut(s)	923
BccI	CCATC	4 cut(s)	355, 442, 614, 1012
BceAI	ACGGC	2 cut(s)	97, 954
BciT130I	CCWGG	2 cut(s)	425, 684
BclI	TGATCA	1 cut(s)	693
BcnI	CCSGG	2 cut(s)	966, 1067
BfaI	CTAG	1 cut(s)	1144
BfmI	CTRYAG	1 cut(s)	540
BglII	AGATCT	1 cut(s)	871
BisI	GCNGC	1 cut(s)	912
BlsI	GCNGC	1 cut(s)	913
Bme1390I	CCNGG	4 cut(s)	425, 684, 966, 1067
Bme18I	GGWCC	2 cut(s)	579, 626
BmeT110I	CYCGRG	1 cut(s)	861
BmgT120I	GGNCC	5 cut(s)	247, 421, 579, 626, 967
BmrFI	CCNGG	4 cut(s)	425, 684, 966, 1067
BmsI	GCATC	3 cut(s)	386, 471, 526
BoxI	GACNNNNGTC	1 cut(s)	678
BpiI	GAAGAC	1 cut(s)	6
BpmI	CTGGAG	1 cut(s)	776
Bpu10I	CCTNAGC	2 cut(s)	308, 485
BpuEI	CTTGAG	1 cut(s)	276
BpuMI	CCSGG	2 cut(s)	966, 1067
BsaAI	YACGTR	1 cut(s)	678
BsaBI	GATNNNNATC	1 cut(s)	870
BsaJI	CCNNGG	3 cut(s)	94, 423, 633
BsaWI	WCCGGW	1 cut(s)	938
BsaXI	ACNNNNNCTCC	4 cut(s)	64, 67, 94, 97
Bsc4I	CCNNNNNNNGG	2 cut(s)	165, 530
Bse118I	RCCGGY	1 cut(s)	165
Bse1I	ACTGG	4 cut(s)	18, 403, 1043, 1110
Bse8I	GATNNNNATC	1 cut(s)	870
BseAI	TCCGGA	1 cut(s)	938
BseBI	CCWGG	2 cut(s)	425, 684
BseDI	CCNNGG	3 cut(s)	94, 423, 633
BseGI	GGATG	4 cut(s)	390, 453, 486, 1086
BseJI	GATNNNNATC	1 cut(s)	870
BseLI	CCNNNNNNNGG	2 cut(s)	165, 530
BseMII	CTCAG	2 cut(s)	299, 580
BseNI	ACTGG	4 cut(s)	18, 403, 1043, 1110
BseRI	GAGGAG	2 cut(s)	72, 998
BseSI	GKGCMC	1 cut(s)	976
BseXI	GCAGC	1 cut(s)	923
BshFI	GGCC	5 cut(s)	112, 248, 422, 504, 969
BsiHKAI	GWGCWC	1 cut(s)	976
BsiHKCI	CYCGRG	1 cut(s)	861
BsiSI	CCGG	4 cut(s)	166, 939, 965, 1066
BslFI	GGGAC	1 cut(s)	141
BslI	CCNNNNNNNGG	2 cut(s)	165, 530
BsmFI	GGGAC	1 cut(s)	141
BsnI	GGCC	5 cut(s)	112, 248, 422, 504, 969
BsoBI	CYCGRG	1 cut(s)	861
Bsp1286I	GDGCHC	1 cut(s)	976
Bsp13I	TCCGGA	1 cut(s)	938
Bsp143I	GATC	7 cut(s)	98, 427, 693, 795, 871, 941, 1114
BspACI	CCGC	3 cut(s)	315, 394, 1102
BspANI	GGCC	5 cut(s)	112, 248, 422, 504, 969
BspCNI	CTCAG	2 cut(s)	300, 579
BspEI	TCCGGA	1 cut(s)	938
BspPI	GGATC	4 cut(s)	106, 435, 790, 949
BspQI	GCTCTTC	1 cut(s)	873
BsrFI	RCCGGY	1 cut(s)	165
BsrI	ACTGG	4 cut(s)	18, 403, 1043, 1110
BssAI	RCCGGY	1 cut(s)	165
BssECI	CCNNGG	3 cut(s)	94, 423, 633
BssMI	GATC	7 cut(s)	98, 427, 693, 795, 871, 941, 1114
BssT1I	CCWWGG	2 cut(s)	94, 633
Bst2UI	CCWGG	2 cut(s)	425, 684
Bst4CI	ACNGT	1 cut(s)	583
Bst6I	CTCTTC	2 cut(s)	873, 1050
BstBAI	YACGTR	1 cut(s)	678
BstC8I	GCNNGC	2 cut(s)	167, 658
BstDEI	CTNAG	5 cut(s)	308, 431, 485, 566, 846
BstF5I	GGATG	4 cut(s)	390, 453, 486, 1086
BstKTI	GATC	7 cut(s)	101, 430, 696, 798, 874, 944, 1117
BstMBI	GATC	7 cut(s)	98, 427, 693, 795, 871, 941, 1114
BstMWI	GCNNNNNNNGC	2 cut(s)	657, 917
BstNI	CCWGG	2 cut(s)	425, 684
BstNSI	RCATGY	1 cut(s)	1108
BstPAI	GACNNNNGTC	1 cut(s)	678
BstSCI	CCNGG	4 cut(s)	423, 682, 964, 1065
BstSFI	CTRYAG	1 cut(s)	540
BstSLI	GKGCMC	1 cut(s)	976
BstV1I	GCAGC	1 cut(s)	923
BstV2I	GAAGAC	1 cut(s)	6
BstX2I	RGATCY	3 cut(s)	427, 795, 871
BstXI	CCANNNNNNTGG	1 cut(s)	25
BstYI	RGATCY	3 cut(s)	427, 795, 871
BsuRI	GGCC	5 cut(s)	112, 248, 422, 504, 969
BtsCI	GGATG	4 cut(s)	390, 453, 486, 1086
BtsIMutI	CAGTG	3 cut(s)	25, 396, 1117
Cac8I	GCNNGC	2 cut(s)	167, 658
CaiI	CAGNNNCTG	1 cut(s)	920
Cfr10I	RCCGGY	1 cut(s)	165
Cfr13I	GGNCC	5 cut(s)	247, 421, 579, 626, 967
CseI	GACGC	1 cut(s)	1028
Csp6I	GTAC	4 cut(s)	118, 888, 1075, 1135
CviAII	CATG	4 cut(s)	25, 272, 1015, 1105
CviQI	GTAC	4 cut(s)	118, 888, 1075, 1135
DdeI	CTNAG	5 cut(s)	308, 431, 485, 566, 846
DpnI	GATC	7 cut(s)	100, 429, 695, 797, 873, 943, 1116
DpnII	GATC	7 cut(s)	98, 427, 693, 795, 871, 941, 1114
DraIII	CACNNNGTG	2 cut(s)	757, 1093
EaeI	YGGCCR	1 cut(s)	110
Eam1104I	CTCTTC	2 cut(s)	873, 1050
EarI	CTCTTC	2 cut(s)	873, 1050
Eco130I	CCWWGG	2 cut(s)	94, 633
Eco47I	GGWCC	2 cut(s)	579, 626
Eco57I	CTGAAG	3 cut(s)	272, 942, 948
Eco72I	CACGTG	1 cut(s)	678
Eco88I	CYCGRG	1 cut(s)	861
EcoRII	CCWGG	2 cut(s)	423, 682
EcoT14I	CCWWGG	2 cut(s)	94, 633
ErhI	CCWWGG	2 cut(s)	94, 633
FaeI	CATG	4 cut(s)	28, 275, 1018, 1108
FalI	AAGNNNNNCTT	2 cut(s)	584, 616
FaqI	GGGAC	1 cut(s)	141
FatI	CATG	4 cut(s)	24, 271, 1014, 1104
FauI	CCCGC	1 cut(s)	308
FbaI	TGATCA	1 cut(s)	693
Fnu4HI	GCNGC	1 cut(s)	912
FokI	GGATG	4 cut(s)	397, 460, 493, 1093
Fsp4HI	GCNGC	1 cut(s)	912
FspBI	CTAG	1 cut(s)	1144
GluI	GCNGC	1 cut(s)	912
GsuI	CTGGAG	1 cut(s)	776
HaeIII	GGCC	5 cut(s)	112, 248, 422, 504, 969
HapII	CCGG	4 cut(s)	166, 939, 965, 1066
HgaI	GACGC	1 cut(s)	1028
Hin1II	CATG	4 cut(s)	28, 275, 1018, 1108
HindIII	AAGCTT	2 cut(s)	641, 930
HinfI	GANTC	6 cut(s)	31, 90, 225, 520, 998, 1084
HpaII	CCGG	4 cut(s)	166, 939, 965, 1066
HphI	GGTGA	3 cut(s)	40, 331, 769
Hpy166II	GTNNAC	5 cut(s)	149, 322, 673, 888, 974
Hpy188I	TCNGA	1 cut(s)	693
Hpy188III	TCNNGA	9 cut(s)	293, 347, 793, 861, 863, 875, 939, 945, 1002
Hpy8I	GTNNAC	5 cut(s)	149, 322, 673, 888, 974
Hpy99I	CGWCG	3 cut(s)	118, 951, 954
HpyAV	CCTTC	2 cut(s)	472, 825
HpyCH4III	ACNGT	1 cut(s)	583
HpyCH4IV	ACGT	3 cut(s)	103, 677, 698
HpyCH4V	TGCA	3 cut(s)	188, 660, 974
HpyF10VI	GCNNNNNNNGC	2 cut(s)	657, 917
HpyF3I	CTNAG	5 cut(s)	308, 431, 485, 566, 846
HpySE526I	ACGT	3 cut(s)	103, 677, 698
Hsp92II	CATG	4 cut(s)	28, 275, 1018, 1108
Kpn2I	TCCGGA	1 cut(s)	938
KroI	GCCGGC	1 cut(s)	165
KroNI	GCCGGC	1 cut(s)	167
Ksp22I	TGATCA	1 cut(s)	693
Kzo9I	GATC	7 cut(s)	98, 427, 693, 795, 871, 941, 1114
LguI	GCTCTTC	1 cut(s)	873
LmnI	GCTCC	2 cut(s)	985, 1036
Lsp1109I	GCAGC	1 cut(s)	923
LweI	GCATC	3 cut(s)	386, 471, 526
MaeI	CTAG	1 cut(s)	1144
MaeII	ACGT	3 cut(s)	103, 677, 698
MaeIII	GTNAC	3 cut(s)	28, 517, 1085
MalI	GATC	7 cut(s)	100, 429, 695, 797, 873, 943, 1116
MboI	GATC	7 cut(s)	98, 427, 693, 795, 871, 941, 1114
MboII	GAAGA	8 cut(s)	6, 247, 250, 335, 881, 890, 1034, 1067
MflI	RGATCY	3 cut(s)	427, 795, 871
MhlI	GDGCHC	1 cut(s)	976
MluCI	AATT	8 cut(s)	197, 211, 338, 496, 546, 711, 722, 804
MlyI	GAGTC	4 cut(s)	25, 84, 514, 1093
MmeI	TCCRAC	1 cut(s)	823
MroI	TCCGGA	1 cut(s)	938
MroNI	GCCGGC	1 cut(s)	165
MseI	TTAA	6 cut(s)	264, 336, 590, 894, 993, 1049
MslI	CAYNNNNRTG	1 cut(s)	276
MspI	CCGG	4 cut(s)	166, 939, 965, 1066
MspR9I	CCNGG	4 cut(s)	425, 684, 966, 1067
MvaI	CCWGG	2 cut(s)	425, 684
MwoI	GCNNNNNNNGC	2 cut(s)	657, 917
NaeI	GCCGGC	1 cut(s)	167
NciI	CCSGG	2 cut(s)	966, 1067
NdeII	GATC	7 cut(s)	98, 427, 693, 795, 871, 941, 1114
NgoMIV	GCCGGC	1 cut(s)	165
NlaIII	CATG	4 cut(s)	28, 275, 1018, 1108
NmuCI	GTSAC	3 cut(s)	28, 517, 1085
NspI	RCATGY	1 cut(s)	1108
PaeR7I	CTCGAG	1 cut(s)	861
PciSI	GCTCTTC	1 cut(s)	873
PdiI	GCCGGC	1 cut(s)	167
PfeI	GAWTC	2 cut(s)	225, 998
PfoI	TCCNGGA	1 cut(s)	682
PkrI	GCNGC	1 cut(s)	913
PleI	GAGTC	4 cut(s)	25, 84, 514, 1092
PmaCI	CACGTG	1 cut(s)	678
PmlI	CACGTG	1 cut(s)	678
PpsI	GAGTC	4 cut(s)	25, 84, 514, 1092
Ppu21I	YACGTR	1 cut(s)	678
PshAI	GACNNNNGTC	1 cut(s)	678
PshBI	ATTAAT	1 cut(s)	894
PsiI	TTATAA	1 cut(s)	575
Psp6I	CCWGG	2 cut(s)	423, 682
PspCI	CACGTG	1 cut(s)	678
PspGI	CCWGG	2 cut(s)	423, 682
PspPI	GGNCC	5 cut(s)	247, 421, 579, 626, 967
PstNI	CAGNNNCTG	1 cut(s)	920
PsuI	RGATCY	3 cut(s)	427, 795, 871
RsaI	GTAC	4 cut(s)	119, 889, 1076, 1136
RsaNI	GTAC	4 cut(s)	118, 888, 1075, 1135
RseI	CAYNNNNRTG	1 cut(s)	276
SapI	GCTCTTC	1 cut(s)	873
SaqAI	TTAA	6 cut(s)	264, 336, 590, 894, 993, 1049
SatI	GCNGC	1 cut(s)	912
Sau3AI	GATC	7 cut(s)	98, 427, 693, 795, 871, 941, 1114
Sau96I	GGNCC	5 cut(s)	247, 421, 579, 626, 967
SchI	GAGTC	4 cut(s)	25, 84, 514, 1093
ScrFI	CCNGG	4 cut(s)	425, 684, 966, 1067
SduI	GDGCHC	1 cut(s)	976
SfaNI	GCATC	3 cut(s)	386, 471, 526
SfcI	CTRYAG	1 cut(s)	540
Sfr274I	CTCGAG	1 cut(s)	861
SinI	GGWCC	2 cut(s)	579, 626
SlaI	CTCGAG	1 cut(s)	861
SmiMI	CAYNNNNRTG	1 cut(s)	276
SmlI	CTYRAG	2 cut(s)	291, 861
SmoI	CTYRAG	2 cut(s)	291, 861
Sse9I	AATT	8 cut(s)	197, 211, 338, 496, 546, 711, 722, 804
SsiI	CCGC	3 cut(s)	315, 394, 1102
SspMI	CTAG	1 cut(s)	1144
StyD4I	CCNGG	4 cut(s)	423, 682, 964, 1065
StyI	CCWWGG	2 cut(s)	94, 633
TaaI	ACNGT	1 cut(s)	583
TaiI	ACGT	3 cut(s)	106, 680, 701
TaqI	TCGA	3 cut(s)	207, 223, 862
TasI	AATT	8 cut(s)	197, 211, 338, 496, 546, 711, 722, 804
TfiI	GAWTC	2 cut(s)	225, 998
Tru1I	TTAA	6 cut(s)	264, 336, 590, 894, 993, 1049
Tru9I	TTAA	6 cut(s)	264, 336, 590, 894, 993, 1049
TscAI	CASTG	3 cut(s)	25, 403, 1117
TseFI	GTSAC	3 cut(s)	28, 517, 1085
TseI	GCWGC	1 cut(s)	911
Tsp45I	GTSAC	3 cut(s)	28, 517, 1085
TspDTI	ATGAA	4 cut(s)	545, 773, 798, 882
TspRI	CASTG	3 cut(s)	25, 403, 1117
VneI	GTGCAC	1 cut(s)	972
VpaK11BI	GGWCC	2 cut(s)	579, 626
VspI	ATTAAT	1 cut(s)	894
XapI	RAATTY	4 cut(s)	338, 496, 546, 804
XceI	RCATGY	1 cut(s)	1108
XcmI	CCANNNNNNNNNTGG	1 cut(s)	415
XhoI	CTCGAG	1 cut(s)	861
XspI	CTAG	1 cut(s)	1144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.