Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001904.1

Orthogroup ID

OG0003062

Physical Location & Seq

Genomic Coordinates Reverse (-)

41903 .. 49620

Gene Structure 7718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

atgaccttcagtggcttttttgtttttggttttgttatggtgttcaccagctccggtgactcaccgatggtgtgtccggactgcggcagtggcttcattgaggagattggcaacccggcccgctccgcccacgtggattcgtgccgcagggggagttccgttgctgcgatgtacatgatcggagccaacaaccgttccgcacaaacttccaggaatagattcattggaggcttggcaaagagttggcttggttgcttatgttttgaaaagctttatcctaaatgctgcttcaggaaacagagtgaaggcttgaacaataaggagcagcacaaggagaagaagataatggccctgaagccttttgttaatcaacttgggtatgtcaatgttcctcaagaaatcaacaggctgaggtgcggggtgaactatcacgctcttaaatttcttcctgaaatagagcagatggctgatttattggcatcaaggatgagaaaccacaccggaagttccaatccttatatggtcctgcatcttaggtttgagaagggcatggtcaggttgaagagatacttggagatgaggggtgctgatggaggaccagccttggagaagcttatgtgctttgcttgcattttgggtgcaaggaactcaagagcacaccaactggaaacaagagcattggatgtgacctttcgtgaagagttgaaagcagtaaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009664 GO:0009832 GO:0009987 GO:0010383 GO:0010393 GO:0012505 GO:0016043 GO:0016051 GO:0017144 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0052325 GO:0052546 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

239

Amino Acids

26.87

Weight (kDa)

9.38

Isoelectric Point (pI)

55.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
O-FucT	PF10250	107 - 186	2.6e-15	GDP-fucose protein O-fucosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003062)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g07951
malus_domestica	MD12G1248200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0318681 RchiOBHm_Chr1g0319091 RchiOBHm_Chr2g0125271 RchiOBHm_Chr4g0426301 RchiOBHm_Chr7g0187311
rosa_laevigata	RLG00000006896 RLG00000028895
rosa_multiflora	Rmu_sc0001747.1_g000005 Rmu_sc0001877.1_g000012 Rmu_sc0001904.1_g000006 Rmu_sc0002983.1_g000016 Rmu_sc0006382.1_g000008 Rmu_sc0007285.1_g000017
rosa_roxburghii	Rroxscaffold_1G00011350 Rroxscaffold_1G00037350 Rroxscaffold_1G00045990 Rroxscaffold_1G00049060 Rroxscaffold_1G00070310 Rroxscaffold_3G00222330 Rroxscaffold_4G00307450 Rroxscaffold_5G00385990 Rroxscaffold_6G00407860 Rroxscaffold_6G00428470
rosa_rugosa	Rorug01G0107800 Rorug03G0135100 Rorug03G0135200
rosa_samantha	Rh2AG155600 Rh2AG341400 Rh2BG161900 Rh2BG322800 Rh3BG144800 Rh3BG291400 Rh3BG291500 Rh4CG112300 Rh5DG415000
rosa_wichuraiana	Rw6G014080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	123
AccIII	TCCGGA	1 cut(s)	76
AciI	CCGC	6 cut(s)	84, 121, 126, 145, 198, 417
AcsI	RAATTY	1 cut(s)	440
AcuI	CTGAAG	2 cut(s)	274, 374
AcvI	CACGTG	1 cut(s)	133
AfaI	GTAC	1 cut(s)	173
AfiI	CCNNNNNNNGG	1 cut(s)	83
AgsI	TTSAA	4 cut(s)	266, 313, 562, 706
AjnI	CCWGG	1 cut(s)	209
AjuI	GAANNNNNNNTTGG	2 cut(s)	554, 586
AluBI	AGCT	3 cut(s)	51, 271, 613
AluI	AGCT	3 cut(s)	51, 271, 613
Alw21I	GWGCWC	1 cut(s)	658
Aor13HI	TCCGGA	1 cut(s)	76
AoxI	GGCC	2 cut(s)	117, 348
ApeKI	GCWGC	3 cut(s)	164, 285, 325
ApoI	RAATTY	1 cut(s)	440
Asp700I	GAANNNNTTC	1 cut(s)	218
AspS9I	GGNCC	4 cut(s)	118, 349, 523, 596
AsuC2I	CCSGG	1 cut(s)	116
AsuHPI	GGTGA	4 cut(s)	37, 54, 68, 433
AvaII	GGWCC	2 cut(s)	523, 596
BbrPI	CACGTG	1 cut(s)	133
Bbv12I	GWGCWC	1 cut(s)	658
BbvCI	CCTCAGC	1 cut(s)	410
BbvI	GCAGC	3 cut(s)	151, 272, 337
BccI	CCATC	3 cut(s)	61, 457, 584
BciT130I	CCWGG	1 cut(s)	211
BcnI	CCSGG	1 cut(s)	116
BisI	GCNGC	5 cut(s)	85, 145, 165, 286, 326
BlsI	GCNGC	5 cut(s)	86, 146, 166, 287, 327
Bme1390I	CCNGG	2 cut(s)	116, 211
Bme18I	GGWCC	2 cut(s)	523, 596
BmgT120I	GGNCC	4 cut(s)	118, 349, 523, 596
BmiI	GGNNCC	1 cut(s)	184
BmrFI	CCNGG	2 cut(s)	116, 211
BmsI	GCATC	2 cut(s)	488, 538
Bpu10I	CCTNAGC	1 cut(s)	410
BpuEI	CTTGAG	2 cut(s)	378, 634
BpuMI	CCSGG	1 cut(s)	116
BsaAI	YACGTR	1 cut(s)	133
BsaJI	CCNNGG	1 cut(s)	603
BsaWI	WCCGGW	3 cut(s)	53, 76, 500
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse1I	ACTGG	1 cut(s)	669
BseAI	TCCGGA	1 cut(s)	76
BseBI	CCWGG	1 cut(s)	211
BseDI	CCNNGG	1 cut(s)	603
BseGI	GGATG	2 cut(s)	492, 688
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMII	CTCAG	1 cut(s)	401
BseNI	ACTGG	1 cut(s)	669
BseRI	GAGGAG	1 cut(s)	116
BseXI	GCAGC	3 cut(s)	151, 272, 337
BshFI	GGCC	2 cut(s)	119, 350
BsiHKAI	GWGCWC	1 cut(s)	658
BsiSI	CCGG	4 cut(s)	54, 77, 116, 501
BslI	CCNNNNNNNGG	1 cut(s)	83
BsnI	GGCC	2 cut(s)	119, 350
Bsp1286I	GDGCHC	1 cut(s)	658
Bsp13I	TCCGGA	1 cut(s)	76
Bsp1407I	TGTACA	1 cut(s)	171
Bsp143I	GATC	1 cut(s)	177
BspACI	CCGC	6 cut(s)	84, 121, 126, 145, 198, 417
BspANI	GGCC	2 cut(s)	119, 350
BspCNI	CTCAG	1 cut(s)	402
BspEI	TCCGGA	1 cut(s)	76
BspLI	GGNNCC	1 cut(s)	184
BsrBI	CCGCTC	1 cut(s)	123
BsrGI	TGTACA	1 cut(s)	171
BsrI	ACTGG	1 cut(s)	669
BssECI	CCNNGG	1 cut(s)	603
BssMI	GATC	1 cut(s)	177
BssT1I	CCWWGG	1 cut(s)	603
Bst2UI	CCWGG	1 cut(s)	211
Bst4CI	ACNGT	1 cut(s)	194
Bst6I	CTCTTC	2 cut(s)	557, 693
BstAUI	TGTACA	1 cut(s)	171
BstBAI	YACGTR	1 cut(s)	133
BstC8I	GCNNGC	2 cut(s)	121, 628
BstDEI	CTNAG	2 cut(s)	410, 533
BstF5I	GGATG	2 cut(s)	492, 688
BstKTI	GATC	1 cut(s)	180
BstMBI	GATC	1 cut(s)	177
BstMWI	GCNNNNNNNGC	3 cut(s)	90, 125, 627
BstNI	CCWGG	1 cut(s)	211
BstSCI	CCNGG	2 cut(s)	114, 209
BstV1I	GCAGC	3 cut(s)	151, 272, 337
BsuRI	GGCC	2 cut(s)	119, 350
BtgZI	GCGATG	1 cut(s)	182
BtsCI	GGATG	2 cut(s)	492, 688
BtsI	GCAGTG	1 cut(s)	94
BtsIMutI	CAGTG	2 cut(s)	16, 94
Cac8I	GCNNGC	2 cut(s)	121, 628
Cfr13I	GGNCC	4 cut(s)	118, 349, 523, 596
Csp6I	GTAC	1 cut(s)	172
CviAII	CATG	2 cut(s)	175, 550
CviQI	GTAC	1 cut(s)	172
DdeI	CTNAG	2 cut(s)	410, 533
DpnI	GATC	1 cut(s)	179
DpnII	GATC	1 cut(s)	177
Eam1104I	CTCTTC	2 cut(s)	557, 693
EarI	CTCTTC	2 cut(s)	557, 693
EciI	GGCGGA	1 cut(s)	115
Eco130I	CCWWGG	1 cut(s)	603
Eco47I	GGWCC	2 cut(s)	523, 596
Eco57I	CTGAAG	2 cut(s)	274, 374
Eco72I	CACGTG	1 cut(s)	133
EcoRII	CCWGG	1 cut(s)	209
EcoT14I	CCWWGG	1 cut(s)	603
ErhI	CCWWGG	1 cut(s)	603
FaeI	CATG	2 cut(s)	178, 553
FaiI	YATR	8 cut(s)	38, 176, 259, 381, 519, 521, 551, 617
FalI	AAGNNNNNCTT	2 cut(s)	554, 586
FatI	CATG	2 cut(s)	174, 549
FauI	CCCGC	2 cut(s)	128, 410
Fnu4HI	GCNGC	5 cut(s)	85, 145, 165, 286, 326
FokI	GGATG	2 cut(s)	499, 695
Fsp4HI	GCNGC	5 cut(s)	85, 145, 165, 286, 326
GluI	GCNGC	5 cut(s)	85, 145, 165, 286, 326
HaeIII	GGCC	2 cut(s)	119, 350
HapII	CCGG	4 cut(s)	54, 77, 116, 501
Hin1II	CATG	2 cut(s)	178, 553
HindIII	AAGCTT	2 cut(s)	269, 611
HinfI	GANTC	3 cut(s)	59, 137, 219
HpaII	CCGG	4 cut(s)	54, 77, 116, 501
HphI	GGTGA	4 cut(s)	37, 54, 68, 433
Hpy166II	GTNNAC	2 cut(s)	45, 424
Hpy188I	TCNGA	1 cut(s)	182
Hpy188III	TCNNGA	6 cut(s)	77, 292, 395, 449, 651, 695
Hpy8I	GTNNAC	2 cut(s)	45, 424
HpyAV	CCTTC	3 cut(s)	16, 299, 538
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	3 cut(s)	529, 630, 641
HpyF10VI	GCNNNNNNNGC	3 cut(s)	90, 125, 627
HpyF3I	CTNAG	2 cut(s)	410, 533
HpySE526I	ACGT	1 cut(s)	132
Hsp92II	CATG	2 cut(s)	178, 553
Kpn2I	TCCGGA	1 cut(s)	76
Kzo9I	GATC	1 cut(s)	177
LmnI	GCTCC	4 cut(s)	56, 128, 182, 322
Lsp1109I	GCAGC	3 cut(s)	151, 272, 337
LweI	GCATC	2 cut(s)	488, 538
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	2 cut(s)	56, 685
MalI	GATC	1 cut(s)	179
MbiI	CCGCTC	1 cut(s)	123
MboI	GATC	1 cut(s)	177
MboII	GAAGA	5 cut(s)	349, 352, 437, 574, 710
MhlI	GDGCHC	1 cut(s)	658
MluCI	AATT	2 cut(s)	440, 715
MlyI	GAGTC	1 cut(s)	53
MnlI	CCTC	6 cut(s)	94, 221, 402, 405, 573, 587
MroI	TCCGGA	1 cut(s)	76
MroXI	GAANNNNTTC	1 cut(s)	218
MseI	TTAA	3 cut(s)	366, 438, 718
MspI	CCGG	4 cut(s)	54, 77, 116, 501
MspR9I	CCNGG	2 cut(s)	116, 211
MvaI	CCWGG	1 cut(s)	211
MwoI	GCNNNNNNNGC	3 cut(s)	90, 125, 627
NciI	CCSGG	1 cut(s)	116
NdeII	GATC	1 cut(s)	177
NlaIII	CATG	2 cut(s)	178, 553
NlaIV	GGNNCC	1 cut(s)	184
NmuCI	GTSAC	2 cut(s)	56, 685
PdmI	GAANNNNTTC	1 cut(s)	218
PfeI	GAWTC	2 cut(s)	137, 219
PfoI	TCCNGGA	1 cut(s)	209
PkrI	GCNGC	5 cut(s)	86, 146, 166, 287, 327
PleI	GAGTC	1 cut(s)	53
PmaCI	CACGTG	1 cut(s)	133
PmlI	CACGTG	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	53
Ppu21I	YACGTR	1 cut(s)	133
Psp6I	CCWGG	1 cut(s)	209
PspCI	CACGTG	1 cut(s)	133
PspGI	CCWGG	1 cut(s)	209
PspN4I	GGNNCC	1 cut(s)	184
PspPI	GGNCC	4 cut(s)	118, 349, 523, 596
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
SaqAI	TTAA	3 cut(s)	366, 438, 718
SatI	GCNGC	5 cut(s)	85, 145, 165, 286, 326
Sau3AI	GATC	1 cut(s)	177
Sau96I	GGNCC	4 cut(s)	118, 349, 523, 596
SchI	GAGTC	1 cut(s)	53
ScrFI	CCNGG	2 cut(s)	116, 211
SduI	GDGCHC	1 cut(s)	658
SetI	ASST	9 cut(s)	8, 53, 135, 273, 416, 539, 560, 615, 692
SfaNI	GCATC	2 cut(s)	488, 538
SinI	GGWCC	2 cut(s)	523, 596
SmlI	CTYRAG	2 cut(s)	393, 649
SmoI	CTYRAG	2 cut(s)	393, 649
Sse9I	AATT	2 cut(s)	440, 715
SsiI	CCGC	6 cut(s)	84, 121, 126, 145, 198, 417
StyD4I	CCNGG	2 cut(s)	114, 209
StyI	CCWWGG	1 cut(s)	603
TaaI	ACNGT	1 cut(s)	194
TaiI	ACGT	1 cut(s)	135
TasI	AATT	2 cut(s)	440, 715
TatI	WGTACW	1 cut(s)	171
TauI	GCSGC	2 cut(s)	87, 147
TfiI	GAWTC	2 cut(s)	137, 219
Tru1I	TTAA	3 cut(s)	366, 438, 718
Tru9I	TTAA	3 cut(s)	366, 438, 718
TscAI	CASTG	2 cut(s)	16, 94
TseFI	GTSAC	2 cut(s)	56, 685
TseI	GCWGC	3 cut(s)	164, 285, 325
Tsp45I	GTSAC	2 cut(s)	56, 685
TspDTI	ATGAA	2 cut(s)	85, 211
TspGWI	ACGGA	1 cut(s)	148
TspRI	CASTG	2 cut(s)	16, 94
VpaK11BI	GGWCC	2 cut(s)	523, 596
XapI	RAATTY	1 cut(s)	440
XcmI	CCANNNNNNNNNTGG	1 cut(s)	517
XmnI	GAANNNNTTC	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.