Rmu_sc0002367.1_g000004

Rdx family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002367.1
OG0003155
Physical Location & Seq
Reverse (-)
22706 .. 24141
1436 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 699 bp
atggatcgcacccagatcgttcttctagggttaccactcttcctcttctgcttcgatgtccttaacctcttcactctccgaccaccaccgcctcctcctcacaaggctccccaccaccaccaccaccaccaccaccatgaccacctccaaaacaaaccacctccgctccccaaagacaccctagacttcccctcacagaaaccaatggctggagcagtggggggcggcaacacagtcaagattagcttctgcacctcttgctcttacaaggggacggcagtaacaatgaccaagatgctagacgctgcttatcctgggattgaagttgttctttcaaactatcccccagctttaccaaagcgtctgcttagcaaattagttcctgttgttcaatttggaatatttgggattgtcatggggggtgagcaacttttccctatggtggggatggtacctcctccatggttttactctttgcgtgcgaataggtttggaaccatggcatctacctggcttcttggtaatgcattgcagtccttccttcaaggcactggtgcttttgaagtttccctcaacgatgaattgattttctctaagctccaggagggaagatttccaggagagattgaactaagagatgccattggcaggaagttggtcaattcaggaatcacaggtgacggggcattatggacctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rdx

Protein Analysis

232

Amino Acids

25.5

Weight (kDa)

8.79

Isoelectric Point (pI)

46.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rdx PF10262 78 - 215 1.9e-17 Rdx family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 451
AccB1I GGYRCC 1 cut(s) 451
AccB7I CCANNNNNTGG 1 cut(s) 209
AccBSI CCGCTC 1 cut(s) 166
AciI CCGC 3 cut(s) 89, 164, 225
AclWI GGATC 1 cut(s) 12
AfaI GTAC 1 cut(s) 453
AfiI CCNNNNNNNGG 4 cut(s) 209, 442, 443, 648
AgsI TTSAA 6 cut(s) 323, 336, 392, 545, 563, 629
AjnI CCWGG 4 cut(s) 313, 509, 600, 616
AluBI AGCT 3 cut(s) 246, 350, 598
AluI AGCT 3 cut(s) 246, 350, 598
AlwI GGATC 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 305
Asp700I GAANNNNTTC 1 cut(s) 327
Asp718I GGTACC 1 cut(s) 451
AspS9I GGNCC 1 cut(s) 693
AsuHPI GGTGA 2 cut(s) 434, 689
AvaII GGWCC 1 cut(s) 693
BanI GGYRCC 1 cut(s) 451
BbvI GCAGC 1 cut(s) 292
BccI CCATC 1 cut(s) 442
BceAI ACGGC 1 cut(s) 291
BcgI CGANNNNNNTGC 1 cut(s) 32
BciT130I CCWGG 4 cut(s) 315, 511, 602, 618
BfaI CTAG 4 cut(s) 26, 182, 299, 697
BisI GCNGC 2 cut(s) 226, 306
BlpI GCTNAGC 1 cut(s) 368
BlsI GCNGC 2 cut(s) 227, 307
Bme1390I CCNGG 4 cut(s) 315, 511, 602, 618
Bme18I GGWCC 1 cut(s) 693
BmgT120I GGNCC 1 cut(s) 693
BmiI GGNNCC 3 cut(s) 108, 453, 496
BmrFI CCNGG 4 cut(s) 315, 511, 602, 618
BmsI GCATC 3 cut(s) 285, 512, 628
BpmI CTGGAG 2 cut(s) 231, 584
Bpu1102I GCTNAGC 1 cut(s) 368
BsaJI CCNNGG 3 cut(s) 314, 461, 498
BsaXI ACNNNNNCTCC 2 cut(s) 150, 180
Bsc4I CCNNNNNNNGG 4 cut(s) 209, 442, 443, 648
Bse1I ACTGG 1 cut(s) 556
Bse3DI GCAATG 1 cut(s) 527
BseBI CCWGG 4 cut(s) 315, 511, 602, 618
BseDI CCNNGG 3 cut(s) 314, 461, 498
BseGI GGATG 1 cut(s) 453
BseLI CCNNNNNNNGG 4 cut(s) 209, 442, 443, 648
BseMI GCAATG 1 cut(s) 527
BseNI ACTGG 1 cut(s) 556
BseRI GAGGAG 3 cut(s) 84, 87, 447
BseXI GCAGC 1 cut(s) 292
BseYI CCCAGC 1 cut(s) 346
BsgI GTGCAG 1 cut(s) 235
BshNI GGYRCC 1 cut(s) 451
BslFI GGGAC 1 cut(s) 286
BslI CCNNNNNNNGG 4 cut(s) 209, 442, 443, 648
BsmFI GGGAC 1 cut(s) 286
Bsp143I GATC 2 cut(s) 4, 15
Bsp1720I GCTNAGC 1 cut(s) 368
Bsp19I CCATGG 2 cut(s) 461, 498
BspACI CCGC 3 cut(s) 89, 164, 225
BspLI GGNNCC 3 cut(s) 108, 453, 496
BspPI GGATC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 451
BsrBI CCGCTC 1 cut(s) 166
BsrDI GCAATG 1 cut(s) 527
BsrI ACTGG 1 cut(s) 556
BssECI CCNNGG 3 cut(s) 314, 461, 498
BssMI GATC 2 cut(s) 4, 15
BssT1I CCWWGG 2 cut(s) 461, 498
Bst2UI CCWGG 4 cut(s) 315, 511, 602, 618
Bst4CI ACNGT 1 cut(s) 235
Bst6I CTCTTC 3 cut(s) 44, 50, 74
BstAPI GCANNNNNTGC 1 cut(s) 258
BstC8I GCNNGC 1 cut(s) 480
BstDEI CTNAG 3 cut(s) 368, 594, 632
BstDSI CCRYGG 2 cut(s) 461, 498
BstEII GGTNACC 1 cut(s) 30
BstF5I GGATG 1 cut(s) 453
BstKTI GATC 2 cut(s) 7, 18
BstMBI GATC 2 cut(s) 4, 15
BstMWI GCNNNNNNNGC 1 cut(s) 258
BstNI CCWGG 4 cut(s) 315, 511, 602, 618
BstPI GGTNACC 1 cut(s) 30
BstSCI CCNGG 4 cut(s) 313, 509, 600, 616
BstV1I GCAGC 1 cut(s) 292
BtgI CCRYGG 2 cut(s) 461, 498
BtsCI GGATG 1 cut(s) 453
BtsI GCAGTG 1 cut(s) 222
BtsIMutI CAGTG 2 cut(s) 222, 549
Cac8I GCNNGC 1 cut(s) 480
Cfr13I GGNCC 1 cut(s) 693
CseI GACGC 2 cut(s) 311, 350
Csp6I GTAC 1 cut(s) 452
CviAII CATG 4 cut(s) 137, 415, 462, 499
CviJI RGCY 6 cut(s) 107, 209, 246, 350, 514, 598
CviKI_1 RGCY 6 cut(s) 107, 209, 246, 350, 514, 598
CviQI GTAC 1 cut(s) 452
DdeI CTNAG 3 cut(s) 368, 594, 632
DpnI GATC 2 cut(s) 6, 17
DpnII GATC 2 cut(s) 4, 15
Eam1104I CTCTTC 3 cut(s) 44, 50, 74
EarI CTCTTC 3 cut(s) 44, 50, 74
Eco130I CCWWGG 2 cut(s) 461, 498
Eco47I GGWCC 1 cut(s) 693
Eco91I GGTNACC 1 cut(s) 30
EcoO65I GGTNACC 1 cut(s) 30
EcoRII CCWGG 4 cut(s) 313, 509, 600, 616
EcoT14I CCWWGG 2 cut(s) 461, 498
EcoT22I ATGCAT 1 cut(s) 529
ErhI CCWWGG 2 cut(s) 461, 498
FaeI CATG 4 cut(s) 140, 418, 465, 502
FaiI YATR 6 cut(s) 138, 416, 440, 463, 500, 691
FalI AAGNNNNNCTT 4 cut(s) 230, 262, 315, 347
FaqI GGGAC 1 cut(s) 286
FatI CATG 4 cut(s) 136, 414, 461, 498
Fnu4HI GCNGC 2 cut(s) 226, 306
FokI GGATG 1 cut(s) 460
Fsp4HI GCNGC 2 cut(s) 226, 306
FspBI CTAG 4 cut(s) 26, 182, 299, 697
GluI GCNGC 2 cut(s) 226, 306
GsaI CCCAGC 1 cut(s) 350
GsuI CTGGAG 2 cut(s) 231, 584
HgaI GACGC 2 cut(s) 311, 350
Hin1II CATG 4 cut(s) 140, 418, 465, 502
HinfI GANTC 1 cut(s) 669
HphI GGTGA 2 cut(s) 434, 689
Hpy188I TCNGA 1 cut(s) 80
Hpy188III TCNNGA 2 cut(s) 238, 666
HpyAV CCTTC 2 cut(s) 547, 551
HpyCH4III ACNGT 1 cut(s) 235
HpyCH4V TGCA 3 cut(s) 252, 527, 532
HpyF10VI GCNNNNNNNGC 1 cut(s) 258
HpyF3I CTNAG 3 cut(s) 368, 594, 632
Hsp92II CATG 4 cut(s) 140, 418, 465, 502
KpnI GGTACC 1 cut(s) 455
Kzo9I GATC 2 cut(s) 4, 15
LmnI GCTCC 4 cut(s) 112, 171, 212, 603
Lsp1109I GCAGC 1 cut(s) 292
LweI GCATC 3 cut(s) 285, 512, 628
MaeI CTAG 4 cut(s) 26, 182, 299, 697
MaeIII GTNAC 3 cut(s) 30, 280, 677
MalI GATC 2 cut(s) 6, 17
MbiI CCGCTC 1 cut(s) 166
MboI GATC 2 cut(s) 4, 15
MboII GAAGA 5 cut(s) 14, 31, 37, 61, 621
MluCI AATT 4 cut(s) 374, 392, 581, 661
MmeI TCCRAC 1 cut(s) 103
Mph1103I ATGCAT 1 cut(s) 529
MroXI GAANNNNTTC 1 cut(s) 327
MseI TTAA 1 cut(s) 63
MslI CAYNNNNRTG 1 cut(s) 135
MspR9I CCNGG 4 cut(s) 315, 511, 602, 618
MvaI CCWGG 4 cut(s) 315, 511, 602, 618
MwoI GCNNNNNNNGC 1 cut(s) 258
NcoI CCATGG 2 cut(s) 461, 498
NdeII GATC 2 cut(s) 4, 15
NlaIII CATG 4 cut(s) 140, 418, 465, 502
NlaIV GGNNCC 3 cut(s) 108, 453, 496
NmuCI GTSAC 1 cut(s) 677
NsiI ATGCAT 1 cut(s) 529
PdmI GAANNNNTTC 1 cut(s) 327
PfeI GAWTC 1 cut(s) 669
PflMI CCANNNNNTGG 1 cut(s) 209
PfoI TCCNGGA 2 cut(s) 600, 616
PkrI GCNGC 2 cut(s) 227, 307
Psp6I CCWGG 4 cut(s) 313, 509, 600, 616
PspEI GGTNACC 1 cut(s) 30
PspFI CCCAGC 1 cut(s) 346
PspGI CCWGG 4 cut(s) 313, 509, 600, 616
PspN4I GGNNCC 3 cut(s) 108, 453, 496
PspPI GGNCC 1 cut(s) 693
RsaI GTAC 1 cut(s) 453
RsaNI GTAC 1 cut(s) 452
RseI CAYNNNNRTG 1 cut(s) 135
SaqAI TTAA 1 cut(s) 63
SatI GCNGC 2 cut(s) 226, 306
Sau3AI GATC 2 cut(s) 4, 15
Sau96I GGNCC 1 cut(s) 693
ScrFI CCNGG 4 cut(s) 315, 511, 602, 618
SfaNI GCATC 3 cut(s) 285, 512, 628
SinI GGWCC 1 cut(s) 693
SmiMI CAYNNNNRTG 1 cut(s) 135
Sse9I AATT 4 cut(s) 374, 392, 581, 661
SsiI CCGC 3 cut(s) 89, 164, 225
SspI AATATT 1 cut(s) 402
SspMI CTAG 4 cut(s) 26, 182, 299, 697
StyD4I CCNGG 4 cut(s) 313, 509, 600, 616
StyI CCWWGG 2 cut(s) 461, 498
TaaI ACNGT 1 cut(s) 235
TaqI TCGA 1 cut(s) 54
TasI AATT 4 cut(s) 374, 392, 581, 661
TauI GCSGC 1 cut(s) 228
TfiI GAWTC 1 cut(s) 669
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TscAI CASTG 2 cut(s) 222, 556
TseFI GTSAC 1 cut(s) 677
TseI GCWGC 1 cut(s) 305
Tsp45I GTSAC 1 cut(s) 677
TspDTI ATGAA 1 cut(s) 594
TspRI CASTG 2 cut(s) 222, 556
Van91I CCANNNNNTGG 1 cut(s) 209
VpaK11BI GGWCC 1 cut(s) 693
XmnI GAANNNNTTC 1 cut(s) 327
XspI CTAG 4 cut(s) 26, 182, 299, 697
Zsp2I ATGCAT 1 cut(s) 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.