Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002495.1

Orthogroup ID

OG0003129

Physical Location & Seq

Genomic Coordinates Forward (+)

109726 .. 113875

Gene Structure 4150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

atggagatttggactcttatcagcgctcaggattgttttaaggcttcgtggagctcgcataaatcggtacatttaaaggccaagcagtccaatgggacgggaaatccagagaacgaaggctgggaatattgcatgaagaaaggacagggtcgaactccaaaacttccttattttgattggactgggacattgggaccatatcctatatctagtaagcgtgtggtacctgctcatattgatttacctgattgggcagctgatggaatcccaaaagaggagcccagtagtgacctgcagcgtgttgttgaggtaagaatgaaattagaggatggtgatatcgtcaatgttgatgtttctgtgtattacaagggtgtccatggtgatctcaatgatacatactttgtgggaaatgttgatgaagagtctcgacggctagtccagtgtacttatgagtgcttggaaaaagcaatatccattgtaaaacctggagttagatttcgtgaagttggagaagtcattaatcgccatgctacgatggcgggattttctgtggtgaaatcatattgtggtcatggtataggggagctctttcattgtgcaccaaatattcctcactatgcaagaaataaagcagttggagtgatgaaagctggacaaacttttacgattgaaccaatgatcaatgcaggaatttggcgtgatcgaatgtggcctgatggatggactgatattactgcggatggaaaacgaagtgctcaatttgagcacacacttctggtgactgagaccggagttgaagttcttacagcacggttgccttcatcgctaaaagtgtacccctggttagatgcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016485 GO:0019538 GO:0031365 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24 zf-C6H2

Protein Analysis

284

Amino Acids

31.8

Weight (kDa)

6.15

Isoelectric Point (pI)

36.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M24	PF00557	106 - 262	3.1e-36	Metallopeptidase family M24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45240 AT2G45240
fragaria_vesca	FvH4_7g11350 FvH4_7g11370
malus_domestica	MD02G1206000.v1.1 MD07G1118400.v1.1 MD07G1118600.v1.1
prunus_persica	Prupe.2G141300_v2.0.a1
pyrus_communis	pycom02g16990 pycom07g10610
rosa_chinensis	RchiOBHm_Chr1g0349561 RchiOBHm_Chr1g0349651 RchiOBHm_Chr4g0403521 RchiOBHm_Chr7g0223151
rosa_laevigata	RLG00000028538 RLG00000028542
rosa_multiflora	Rmu_sc0001593.1_g000008 Rmu_sc0002495.1_g000024 Rmu_sc0002495.1_g000038 Rmu_sc0006074.1_g000011 Rmu_sc0012293.1_g000003
rosa_roxburghii	Rroxscaffold_4G00305410 Rroxscaffold_4G00305430
rosa_rugosa	Rorug01G0204500 Rorug05G0164500
rosa_samantha	Rh1AG221900 Rh1AG222400 Rh1BG188000 Rh1BG188300 Rh1CG206700 Rh1CG206800 Rh1CG207100 Rh1DG217400 Rh1DG217600
rosa_wichuraiana	Rw1G018860 Rw1G018910 Rw1G018950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	235, 300
Acc65I	GGTACC	1 cut(s)	223
AccB1I	GGYRCC	1 cut(s)	223
AciI	CCGC	2 cut(s)	539, 737
AcsI	RAATTY	1 cut(s)	690
AfaI	GTAC	4 cut(s)	69, 225, 445, 836
AfeI	AGCGCT	1 cut(s)	25
AfiI	CCNNNNNNNGG	1 cut(s)	274
AgsI	TTSAA	2 cut(s)	671, 797
AhdI	GACNNNNNGTC	1 cut(s)	434
AjnI	CCWGG	2 cut(s)	484, 839
AloI	GAACNNNNNNTCC	2 cut(s)	783, 815
AluBI	AGCT	4 cut(s)	54, 257, 586, 650
AluI	AGCT	4 cut(s)	54, 257, 586, 650
Alw21I	GWGCWC	5 cut(s)	56, 588, 601, 757, 768
Alw26I	GTCTC	2 cut(s)	429, 779
Alw44I	GTGCAC	1 cut(s)	597
Aor51HI	AGCGCT	1 cut(s)	25
AoxI	GGCC	2 cut(s)	78, 710
ApaLI	GTGCAC	1 cut(s)	597
ApeKI	GCWGC	2 cut(s)	254, 295
ApoI	RAATTY	1 cut(s)	690
AseI	ATTAAT	1 cut(s)	519
Asp718I	GGTACC	1 cut(s)	223
AspLEI	GCGC	1 cut(s)	26
AspS9I	GGNCC	1 cut(s)	194
AsuHPI	GGTGA	4 cut(s)	344, 392, 565, 790
AvaII	GGWCC	1 cut(s)	194
BaeGI	GKGCMC	1 cut(s)	601
BanI	GGYRCC	1 cut(s)	223
BanII	GRGCYC	3 cut(s)	56, 282, 588
Bbv12I	GWGCWC	5 cut(s)	56, 588, 601, 757, 768
BbvI	GCAGC	2 cut(s)	266, 307
BccI	CCATC	6 cut(s)	254, 323, 529, 710, 714, 734
BceAI	ACGGC	1 cut(s)	446
BciT130I	CCWGG	2 cut(s)	486, 841
BclI	TGATCA	1 cut(s)	678
BcoDI	GTCTC	2 cut(s)	429, 779
BfaI	CTAG	2 cut(s)	210, 434
BfmI	CTRYAG	1 cut(s)	293
BfoI	RGCGCY	1 cut(s)	27
BfuAI	ACCTGC	2 cut(s)	235, 300
BisI	GCNGC	2 cut(s)	255, 296
BlsI	GCNGC	2 cut(s)	256, 297
Bme1390I	CCNGG	2 cut(s)	486, 841
Bme18I	GGWCC	1 cut(s)	194
BmeRI	GACNNNNNGTC	1 cut(s)	434
BmgT120I	GGNCC	1 cut(s)	194
BmiI	GGNNCC	3 cut(s)	195, 225, 279
BmrFI	CCNGG	2 cut(s)	486, 841
BmrI	ACTGGG	2 cut(s)	192, 276
BmsI	GCATC	1 cut(s)	838
BmuI	ACTGGG	2 cut(s)	192, 276
BpmI	CTGGAG	1 cut(s)	507
Bpu10I	CCTNAGC	1 cut(s)	27
BsaI	GGTCTC	1 cut(s)	779
BsaJI	CCNNGG	2 cut(s)	376, 839
BsaWI	WCCGGW	1 cut(s)	788
BsaXI	ACNNNNNCTCC	2 cut(s)	783, 813
Bsc4I	CCNNNNNNNGG	1 cut(s)	274
Bse1I	ACTGG	3 cut(s)	187, 282, 439
BseBI	CCWGG	2 cut(s)	486, 841
BseDI	CCNNGG	2 cut(s)	376, 839
BseGI	GGATG	3 cut(s)	334, 725, 745
BseLI	CCNNNNNNNGG	1 cut(s)	274
BseMII	CTCAG	2 cut(s)	41, 774
BseNI	ACTGG	3 cut(s)	187, 282, 439
BseRI	GAGGAG	1 cut(s)	290
BseSI	GKGCMC	1 cut(s)	601
BseXI	GCAGC	2 cut(s)	266, 307
BseYI	CCCAGC	1 cut(s)	120
BshFI	GGCC	2 cut(s)	80, 712
BshNI	GGYRCC	1 cut(s)	223
BsiHKAI	GWGCWC	5 cut(s)	56, 588, 601, 757, 768
BsiSI	CCGG	1 cut(s)	789
BslFI	GGGAC	3 cut(s)	109, 199, 207
BslI	CCNNNNNNNGG	1 cut(s)	274
BsmAI	GTCTC	2 cut(s)	429, 779
BsmFI	GGGAC	3 cut(s)	109, 199, 207
BsnI	GGCC	2 cut(s)	80, 712
Bso31I	GGTCTC	1 cut(s)	779
Bsp1286I	GDGCHC	6 cut(s)	56, 282, 588, 601, 757, 768
Bsp143I	GATC	3 cut(s)	382, 678, 700
Bsp19I	CCATGG	1 cut(s)	376
BspACI	CCGC	2 cut(s)	539, 737
BspANI	GGCC	2 cut(s)	80, 712
BspCNI	CTCAG	2 cut(s)	40, 775
BspLI	GGNNCC	3 cut(s)	195, 225, 279
BspMAI	CTGCAG	1 cut(s)	297
BspMI	ACCTGC	2 cut(s)	235, 300
BspT107I	GGYRCC	1 cut(s)	223
BspTNI	GGTCTC	1 cut(s)	779
BsrI	ACTGG	3 cut(s)	187, 282, 439
BssECI	CCNNGG	2 cut(s)	376, 839
BssMI	GATC	3 cut(s)	382, 678, 700
BssT1I	CCWWGG	1 cut(s)	376
Bst2UI	CCWGG	2 cut(s)	486, 841
Bst4CI	ACNGT	1 cut(s)	813
Bst6I	CTCTTC	1 cut(s)	414
BstC8I	GCNNGC	1 cut(s)	56
BstDEI	CTNAG	2 cut(s)	27, 783
BstDSI	CCRYGG	1 cut(s)	376
BstF5I	GGATG	3 cut(s)	334, 725, 745
BstH2I	RGCGCY	1 cut(s)	27
BstHHI	GCGC	1 cut(s)	26
BstKTI	GATC	3 cut(s)	385, 681, 703
BstMAI	GTCTC	2 cut(s)	429, 779
BstMBI	GATC	3 cut(s)	382, 678, 700
BstMWI	GCNNNNNNNGC	2 cut(s)	536, 823
BstNI	CCWGG	2 cut(s)	486, 841
BstSCI	CCNGG	2 cut(s)	484, 839
BstSFI	CTRYAG	1 cut(s)	293
BstSLI	GKGCMC	1 cut(s)	601
BstV1I	GCAGC	2 cut(s)	266, 307
BsuRI	GGCC	2 cut(s)	80, 712
BtgI	CCRYGG	1 cut(s)	376
BtgZI	GCGATG	1 cut(s)	807
BtsCI	GGATG	3 cut(s)	334, 725, 745
BtsIMutI	CAGTG	1 cut(s)	446
BveI	ACCTGC	2 cut(s)	235, 300
Cac8I	GCNNGC	1 cut(s)	56
CfoI	GCGC	1 cut(s)	26
Cfr13I	GGNCC	1 cut(s)	194
Csp6I	GTAC	4 cut(s)	68, 224, 444, 835
CviAII	CATG	4 cut(s)	133, 377, 527, 572
CviQI	GTAC	4 cut(s)	68, 224, 444, 835
DdeI	CTNAG	2 cut(s)	27, 783
DpnI	GATC	3 cut(s)	384, 680, 702
DpnII	GATC	3 cut(s)	382, 678, 700
DraI	TTTAAA	1 cut(s)	75
DriI	GACNNNNNGTC	1 cut(s)	434
Eam1104I	CTCTTC	1 cut(s)	414
Eam1105I	GACNNNNNGTC	1 cut(s)	434
EarI	CTCTTC	1 cut(s)	414
Ecl136II	GAGCTC	2 cut(s)	54, 586
Eco130I	CCWWGG	1 cut(s)	376
Eco24I	GRGCYC	3 cut(s)	56, 282, 588
Eco31I	GGTCTC	1 cut(s)	779
Eco32I	GATATC	1 cut(s)	337
Eco47I	GGWCC	1 cut(s)	194
Eco47III	AGCGCT	1 cut(s)	25
Eco53kI	GAGCTC	2 cut(s)	54, 586
EcoICRI	GAGCTC	2 cut(s)	54, 586
EcoRII	CCWGG	2 cut(s)	484, 839
EcoRV	GATATC	1 cut(s)	337
EcoT14I	CCWWGG	1 cut(s)	376
EcoT38I	GRGCYC	3 cut(s)	56, 282, 588
ErhI	CCWWGG	1 cut(s)	376
FaeI	CATG	4 cut(s)	136, 380, 530, 575
FaqI	GGGAC	3 cut(s)	109, 199, 207
FatI	CATG	4 cut(s)	132, 376, 526, 571
FauI	CCCGC	1 cut(s)	532
FbaI	TGATCA	1 cut(s)	678
Fnu4HI	GCNGC	2 cut(s)	255, 296
FokI	GGATG	3 cut(s)	341, 732, 752
FriOI	GRGCYC	3 cut(s)	56, 282, 588
Fsp4HI	GCNGC	2 cut(s)	255, 296
FspBI	CTAG	2 cut(s)	210, 434
GlaI	GCGC	1 cut(s)	25
GluI	GCNGC	2 cut(s)	255, 296
GsaI	CCCAGC	1 cut(s)	124
GsuI	CTGGAG	1 cut(s)	507
HaeII	RGCGCY	1 cut(s)	27
HaeIII	GGCC	2 cut(s)	80, 712
HapII	CCGG	1 cut(s)	789
HhaI	GCGC	1 cut(s)	26
Hin1II	CATG	4 cut(s)	136, 380, 530, 575
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HinfI	GANTC	3 cut(s)	13, 264, 422
HpaII	CCGG	1 cut(s)	789
HphI	GGTGA	4 cut(s)	344, 392, 565, 790
Hpy166II	GTNNAC	3 cut(s)	444, 599, 835
Hpy188III	TCNNGA	4 cut(s)	29, 107, 426, 500
Hpy8I	GTNNAC	3 cut(s)	444, 599, 835
Hpy99I	CGWCG	1 cut(s)	432
HpyAV	CCTTC	2 cut(s)	110, 828
HpyCH4III	ACNGT	1 cut(s)	813
HpyCH4V	TGCA	5 cut(s)	132, 295, 599, 620, 686
HpyF10VI	GCNNNNNNNGC	2 cut(s)	536, 823
HpyF3I	CTNAG	2 cut(s)	27, 783
Hsp92II	CATG	4 cut(s)	136, 380, 530, 575
HspAI	GCGC	1 cut(s)	24
KpnI	GGTACC	1 cut(s)	227
Ksp22I	TGATCA	1 cut(s)	678
Kzo9I	GATC	3 cut(s)	382, 678, 700
LmnI	GCTCC	3 cut(s)	51, 277, 583
Lsp1109I	GCAGC	2 cut(s)	266, 307
LweI	GCATC	1 cut(s)	838
MaeI	CTAG	2 cut(s)	210, 434
MaeIII	GTNAC	2 cut(s)	287, 778
MalI	GATC	3 cut(s)	384, 680, 702
MboI	GATC	3 cut(s)	382, 678, 700
MboII	GAAGA	2 cut(s)	148, 431
MhlI	GDGCHC	6 cut(s)	56, 282, 588, 601, 757, 768
MluCI	AATT	3 cut(s)	320, 690, 758
MlyI	GAGTC	2 cut(s)	7, 431
MmeI	TCCRAC	2 cut(s)	487, 616
MnlI	CCTC	4 cut(s)	268, 301, 319, 621
MseI	TTAA	3 cut(s)	39, 74, 519
MspA1I	CMGCKG	1 cut(s)	257
MspI	CCGG	1 cut(s)	789
MspR9I	CCNGG	2 cut(s)	486, 841
MvaI	CCWGG	2 cut(s)	486, 841
MwoI	GCNNNNNNNGC	2 cut(s)	536, 823
NcoI	CCATGG	1 cut(s)	376
NdeII	GATC	3 cut(s)	382, 678, 700
NlaIII	CATG	4 cut(s)	136, 380, 530, 575
NlaIV	GGNNCC	3 cut(s)	195, 225, 279
NmuCI	GTSAC	2 cut(s)	287, 778
PfeI	GAWTC	1 cut(s)	264
PflFI	GACNNNGTC	1 cut(s)	147
PkrI	GCNGC	2 cut(s)	256, 297
PleI	GAGTC	2 cut(s)	7, 430
PpsI	GAGTC	2 cut(s)	7, 430
PshBI	ATTAAT	1 cut(s)	519
Psp124BI	GAGCTC	2 cut(s)	56, 588
Psp6I	CCWGG	2 cut(s)	484, 839
PspFI	CCCAGC	1 cut(s)	120
PspGI	CCWGG	2 cut(s)	484, 839
PspN4I	GGNNCC	3 cut(s)	195, 225, 279
PspPI	GGNCC	1 cut(s)	194
PstI	CTGCAG	1 cut(s)	297
PsyI	GACNNNGTC	1 cut(s)	147
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	4 cut(s)	69, 225, 445, 836
RsaNI	GTAC	4 cut(s)	68, 224, 444, 835
SacI	GAGCTC	2 cut(s)	56, 588
SaqAI	TTAA	3 cut(s)	39, 74, 519
SatI	GCNGC	2 cut(s)	255, 296
Sau3AI	GATC	3 cut(s)	382, 678, 700
Sau96I	GGNCC	1 cut(s)	194
SchI	GAGTC	2 cut(s)	7, 431
ScrFI	CCNGG	2 cut(s)	486, 841
SduI	GDGCHC	6 cut(s)	56, 282, 588, 601, 757, 768
SetI	ASST	9 cut(s)	56, 229, 247, 259, 294, 312, 487, 588, 652
SfaNI	GCATC	1 cut(s)	838
SfcI	CTRYAG	1 cut(s)	293
SinI	GGWCC	1 cut(s)	194
Sse9I	AATT	3 cut(s)	320, 690, 758
SsiI	CCGC	2 cut(s)	539, 737
SspI	AATATT	2 cut(s)	128, 607
SspMI	CTAG	2 cut(s)	210, 434
SstI	GAGCTC	2 cut(s)	56, 588
StyD4I	CCNGG	2 cut(s)	484, 839
StyI	CCWWGG	1 cut(s)	376
TaaI	ACNGT	1 cut(s)	813
TaqI	TCGA	3 cut(s)	151, 427, 703
TasI	AATT	3 cut(s)	320, 690, 758
TatI	WGTACW	1 cut(s)	443
TfiI	GAWTC	1 cut(s)	264
Tru1I	TTAA	3 cut(s)	39, 74, 519
Tru9I	TTAA	3 cut(s)	39, 74, 519
TscAI	CASTG	1 cut(s)	446
TseFI	GTSAC	2 cut(s)	287, 778
TseI	GCWGC	2 cut(s)	254, 295
Tsp45I	GTSAC	2 cut(s)	287, 778
TspDTI	ATGAA	6 cut(s)	149, 332, 432, 581, 659, 810
TspRI	CASTG	1 cut(s)	446
Tth111I	GACNNNGTC	1 cut(s)	147
VneI	GTGCAC	1 cut(s)	597
VpaK11BI	GGWCC	1 cut(s)	194
VspI	ATTAAT	1 cut(s)	519
XapI	RAATTY	1 cut(s)	690
XspI	CTAG	2 cut(s)	210, 434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.