Rmu_sc0002563.1_g000054

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002563.1
OG0004883
Physical Location & Seq
Forward (+)
185990 .. 190079
4090 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 687 bp
atgagattgtggttcaaggaagatgggagatgggagatatcttatagaggtgaaaagagaaaaaggaagatggacaaagttggaagtttgaggataaaaaaattcagaggaggtctagatatcaactatggaggtatggatagaaccactcttgtgttagatcaggctgtccaacaattgcacatgccttcctgtccaattcaactggcttttggagatcggtcggtttttgatgtgacggaaggaaagtctcattacagtgatgataatgttgactacgatgtcatattagttaaccggtttgttgatactaaactccaacaactcgagaaaagagcatatgctgcatctctagagtggatttctcaacatggtctacttttaagtggcttgattcagaagattgctgatattgttgttgatagaatgggtggtccggttggagatgcggatgagattttaagaaggtggaaaataaggaggcatgagttgctgagttcaatgaacactatcattcttcccctcagaagaattgatgttggactttcacgccaccggacccttctctttaaggtactagctgataagataaatcttccatgtatgctggtcaaaggtagctactacacggatactgatgatggagttgtaaacttgattaaaattgatagtggaattggaagataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
ko04010 map04010
Pfam Domains
Protein Families
EDR1 Pkinase_Tyr

Protein Analysis

228

Amino Acids

26.15

Weight (kDa)

9.39

Isoelectric Point (pI)

44.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR1_CTR1_ARMC3_pept PF14381 88 - 224 5e-43 EDR1/CTR1/ARMC3, peptidase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 281
AccI GTMKAC 1 cut(s) 376
AciI CCGC 1 cut(s) 449
AcsI RAATTY 1 cut(s) 101
AfaI GTAC 1 cut(s) 576
AgeI ACCGGT 1 cut(s) 297
AgsI TTSAA 3 cut(s) 16, 203, 501
AleI CACNNNNGTG 1 cut(s) 152
AluBI AGCT 2 cut(s) 581, 621
AluI AGCT 2 cut(s) 581, 621
Alw26I GTCTC 1 cut(s) 255
Ama87I CYCGRG 1 cut(s) 326
ApeKI GCWGC 1 cut(s) 344
ApoI RAATTY 1 cut(s) 101
AsiGI ACCGGT 1 cut(s) 297
AspS9I GGNCC 2 cut(s) 434, 558
AsuHPI GGTGA 1 cut(s) 62
AvaI CYCGRG 1 cut(s) 326
AvaII GGWCC 2 cut(s) 434, 558
BbvI GCAGC 1 cut(s) 331
BccI CCATC 4 cut(s) 17, 24, 64, 635
BciVI GTATCC 1 cut(s) 625
BcoDI GTCTC 1 cut(s) 255
BfaI CTAG 3 cut(s) 116, 353, 578
BfuI GTATCC 1 cut(s) 625
BisI GCNGC 1 cut(s) 345
BlsI GCNGC 1 cut(s) 346
Bme18I GGWCC 2 cut(s) 434, 558
BmeT110I CYCGRG 1 cut(s) 326
BmgT120I GGNCC 2 cut(s) 434, 558
BmiI GGNNCC 1 cut(s) 560
BmsI GCATC 2 cut(s) 356, 436
BsaWI WCCGGW 3 cut(s) 297, 436, 555
Bse118I RCCGGY 1 cut(s) 297
Bse1I ACTGG 1 cut(s) 210
BseGI GGATG 1 cut(s) 457
BseMII CTCAG 2 cut(s) 485, 538
BseNI ACTGG 1 cut(s) 210
BseRI GAGGAG 1 cut(s) 123
BseXI GCAGC 1 cut(s) 331
Bsh1285I CGRYCG 1 cut(s) 224
BshTI ACCGGT 1 cut(s) 297
BsiEI CGRYCG 1 cut(s) 224
BsiHKCI CYCGRG 1 cut(s) 326
BsiSI CCGG 3 cut(s) 298, 437, 556
BsmAI GTCTC 1 cut(s) 255
BsoBI CYCGRG 1 cut(s) 326
Bsp143I GATC 2 cut(s) 160, 217
BspACI CCGC 1 cut(s) 449
BspCNI CTCAG 2 cut(s) 486, 537
BspLI GGNNCC 1 cut(s) 560
BsrFI RCCGGY 1 cut(s) 297
BsrI ACTGG 1 cut(s) 210
BssAI RCCGGY 1 cut(s) 297
BssMI GATC 2 cut(s) 160, 217
Bst4CI ACNGT 1 cut(s) 260
BstAPI GCANNNNNTGC 2 cut(s) 344, 490
BstDEI CTNAG 2 cut(s) 494, 524
BstF5I GGATG 1 cut(s) 457
BstKTI GATC 2 cut(s) 163, 220
BstMAI GTCTC 1 cut(s) 255
BstMBI GATC 2 cut(s) 160, 217
BstMCI CGRYCG 1 cut(s) 224
BstMWI GCNNNNNNNGC 2 cut(s) 344, 490
BstNSI RCATGY 1 cut(s) 187
BstV1I GCAGC 1 cut(s) 331
BsuI GTATCC 1 cut(s) 625
BtsCI GGATG 1 cut(s) 457
BtsIMutI CAGTG 1 cut(s) 265
Cfr10I RCCGGY 1 cut(s) 297
Cfr13I GGNCC 2 cut(s) 434, 558
Csp6I GTAC 1 cut(s) 575
CspAI ACCGGT 1 cut(s) 297
CviAII CATG 4 cut(s) 184, 371, 485, 600
CviJI RGCY 5 cut(s) 167, 209, 390, 581, 621
CviKI_1 RGCY 5 cut(s) 167, 209, 390, 581, 621
CviQI GTAC 1 cut(s) 575
DdeI CTNAG 2 cut(s) 494, 524
DpnI GATC 2 cut(s) 162, 219
DpnII GATC 2 cut(s) 160, 217
DrdI GACNNNNNNGTC 1 cut(s) 281
DseDI GACNNNNNNGTC 1 cut(s) 281
Eco32I GATATC 2 cut(s) 39, 121
Eco47I GGWCC 2 cut(s) 434, 558
Eco88I CYCGRG 1 cut(s) 326
EcoRV GATATC 2 cut(s) 39, 121
FaeI CATG 4 cut(s) 187, 374, 488, 603
FatI CATG 4 cut(s) 183, 370, 484, 599
FauNDI CATATG 1 cut(s) 340
FblI GTMKAC 1 cut(s) 376
Fnu4HI GCNGC 1 cut(s) 345
FokI GGATG 1 cut(s) 464
Fsp4HI GCNGC 1 cut(s) 345
FspBI CTAG 3 cut(s) 116, 353, 578
GluI GCNGC 1 cut(s) 345
HapII CCGG 3 cut(s) 298, 437, 556
Hin1II CATG 4 cut(s) 187, 374, 488, 603
HincII GTYRAC 2 cut(s) 274, 295
HindII GTYRAC 2 cut(s) 274, 295
HinfI GANTC 1 cut(s) 394
HpaI GTTAAC 1 cut(s) 295
HpaII CCGG 3 cut(s) 298, 437, 556
HphI GGTGA 1 cut(s) 62
Hpy166II GTNNAC 4 cut(s) 274, 295, 377, 652
Hpy188I TCNGA 3 cut(s) 107, 399, 527
Hpy188III TCNNGA 3 cut(s) 116, 328, 353
Hpy8I GTNNAC 4 cut(s) 274, 295, 377, 652
HpyAV CCTTC 4 cut(s) 198, 236, 459, 572
HpyCH4III ACNGT 1 cut(s) 260
HpyCH4V TGCA 2 cut(s) 181, 347
HpyF10VI GCNNNNNNNGC 2 cut(s) 344, 490
HpyF3I CTNAG 2 cut(s) 494, 524
Hsp92II CATG 4 cut(s) 187, 374, 488, 603
KspAI GTTAAC 1 cut(s) 295
Kzo9I GATC 2 cut(s) 160, 217
LpnPI CCDG 7 cut(s) 149, 191, 205, 311, 450, 569, 593
Lsp1109I GCAGC 1 cut(s) 331
LweI GCATC 2 cut(s) 356, 436
MaeI CTAG 3 cut(s) 116, 353, 578
MaeIII GTNAC 1 cut(s) 235
MalI GATC 2 cut(s) 162, 219
MboI GATC 2 cut(s) 160, 217
MboII GAAGA 6 cut(s) 32, 79, 412, 509, 540, 587
MfeI CAATTG 1 cut(s) 176
MluCI AATT 6 cut(s) 101, 176, 198, 531, 663, 675
MmeI TCCRAC 5 cut(s) 61, 196, 343, 421, 520
MnlI CCTC 7 cut(s) 41, 84, 101, 104, 125, 474, 533
MseI TTAA 5 cut(s) 294, 383, 461, 570, 660
MslI CAYNNNNRTG 2 cut(s) 152, 258
MspI CCGG 3 cut(s) 298, 437, 556
MunI CAATTG 1 cut(s) 176
MwoI GCNNNNNNNGC 2 cut(s) 344, 490
NdeI CATATG 1 cut(s) 340
NdeII GATC 2 cut(s) 160, 217
NlaIII CATG 4 cut(s) 187, 374, 488, 603
NlaIV GGNNCC 1 cut(s) 560
NmuCI GTSAC 1 cut(s) 235
NspI RCATGY 1 cut(s) 187
OliI CACNNNNGTG 1 cut(s) 152
PaeR7I CTCGAG 1 cut(s) 326
PfeI GAWTC 1 cut(s) 394
PinAI ACCGGT 1 cut(s) 297
PkrI GCNGC 1 cut(s) 346
PspN4I GGNNCC 1 cut(s) 560
PspPI GGNCC 2 cut(s) 434, 558
RsaI GTAC 1 cut(s) 576
RsaNI GTAC 1 cut(s) 575
RseI CAYNNNNRTG 2 cut(s) 152, 258
SaqAI TTAA 5 cut(s) 294, 383, 461, 570, 660
SatI GCNGC 1 cut(s) 345
Sau3AI GATC 2 cut(s) 160, 217
Sau96I GGNCC 2 cut(s) 434, 558
SetI ASST 8 cut(s) 52, 115, 136, 470, 576, 583, 619, 623
SfaNI GCATC 2 cut(s) 356, 436
Sfr274I CTCGAG 1 cut(s) 326
SinI GGWCC 2 cut(s) 434, 558
SlaI CTCGAG 1 cut(s) 326
SmiMI CAYNNNNRTG 2 cut(s) 152, 258
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
Sse9I AATT 6 cut(s) 101, 176, 198, 531, 663, 675
SsiI CCGC 1 cut(s) 449
SspMI CTAG 3 cut(s) 116, 353, 578
TaaI ACNGT 1 cut(s) 260
TaqI TCGA 1 cut(s) 327
TaqII GACCGA 1 cut(s) 210
TasI AATT 6 cut(s) 101, 176, 198, 531, 663, 675
TfiI GAWTC 1 cut(s) 394
Tru1I TTAA 5 cut(s) 294, 383, 461, 570, 660
Tru9I TTAA 5 cut(s) 294, 383, 461, 570, 660
TscAI CASTG 1 cut(s) 265
TseFI GTSAC 1 cut(s) 235
TseI GCWGC 1 cut(s) 344
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 1 cut(s) 518
TspGWI ACGGA 2 cut(s) 254, 644
TspRI CASTG 1 cut(s) 265
VpaK11BI GGWCC 2 cut(s) 434, 558
XapI RAATTY 1 cut(s) 101
XbaI TCTAGA 2 cut(s) 115, 352
XceI RCATGY 1 cut(s) 187
XhoI CTCGAG 1 cut(s) 326
XmiI GTMKAC 1 cut(s) 376
XspI CTAG 3 cut(s) 116, 353, 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.