Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003354.1

Orthogroup ID

OG0003694

Physical Location & Seq

Genomic Coordinates Reverse (-)

80401 .. 83140

Gene Structure 2740 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

atggtcagatccattaggcgatactatctagcggtggcctatgggtggcagaaacctggacttcgcgtcggtgttctactctgccctcggccaaatggacctttaaccttacgcaattcacgaagctggatcagggtccgacttagctctgggatatccgagcctacgcccaccaccggcacaaacagcattataaatgtgaccagcttctcaaccagtggtgttattataatggagagttcaagcagtgaaagcttggaggtgtcagtctccaccgtcgccgaatcagtcagagaggaagctggcaacatgccagaggacgagcgatcctcttccgtctccttgacgactgttttgagccccgaatgccgaatctgtcagactgaggactccatcgaccacacggaggctccttgccggtgcaatggcaccctaaagtttgcgcacagagattgtatccagcgatgggtcaattctcgtttcaaggctacttgtgagatctgtaaccagcagtatgagggtggttatagagtaacggtgccaccacctgcaacgccgccgcagcctacgaggagggagattgaggagattaggagggtgatggaggaggctgaaggttatcggtttttacattctgagaatctgatcatagcgagtaacgtaggcggcggccttcagattcggattggacagccttcaccttcaccttggcctcaattatctcctcaattcaccagggataataatagtccaggactccagggttttggcttgcaagttcatgggtgggtaaggacggcccgacaaaaattggttcagaaacaaccgtttagtcttcatcttcgatttactgaatcaatccgaacaggaggggatttcgagtcggaggctgatccgccccctcggaggctgatccgcacccgtcagaatcgcagtggcattgcagttgatggataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008970 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009650 GO:0009987 GO:0010224 GO:0016298 GO:0016787 GO:0016788 GO:0034644 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0052689 GO:0071214 GO:0071478 GO:0071482 GO:0071493 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

318

Amino Acids

35.45

Weight (kDa)

9.0

Isoelectric Point (pI)

65.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	123 - 168	1.6e-12	RING-variant domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003694)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15710 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470
malus_domestica	MD09G1051400.v1.1 MD17G1041600.v1.1
prunus_persica	Prupe.3G267400_v2.0.a1
rosa_laevigata	RLG00000008079 RLG00000021771 RLG00000021779
rosa_multiflora	Rmu_co8372247.1_g000001 Rmu_co8415085.1_g000001 Rmu_sc0003354.1_g000020 Rmu_sc0003551.1_g000007
rosa_roxburghii	Rroxscaffold_1G00024980 Rroxscaffold_2G00083030 Rroxscaffold_5G00359110
rosa_rugosa	Rorug02G0533300.1 Rorug02G0533700 Rorug04G0132900 Rorug04G0133000
rosa_samantha	Rh2AG602500 Rh2BG615800 Rh2CG584200 Rh2DG626000 Rh2DG626900 Rh4AG193900 Rh4BG192400 Rh4CG204900 Rh4DG191600 Rh5BG374300
rosa_wichuraiana	Rw4G016500 Rw5G034110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	194, 230
AarI	CACCTGC	1 cut(s)	556
Acc16I	TGCGCA	1 cut(s)	444
Acc36I	ACCTGC	1 cut(s)	556
AccB1I	GGYRCC	2 cut(s)	428, 538
AccII	CGCG	1 cut(s)	66
AciI	CCGC	7 cut(s)	32, 557, 560, 666, 669, 896, 916
AclWI	GGATC	5 cut(s)	3, 137, 321, 887, 907
AcoI	YGGCCR	1 cut(s)	89
AcuI	CTGAAG	2 cut(s)	633, 659
AfiI	CCNNNNNNNGG	5 cut(s)	45, 176, 406, 466, 906
AgsI	TTSAA	2 cut(s)	243, 484
AhdI	GACNNNNNGTC	1 cut(s)	65
AjnI	CCWGG	4 cut(s)	55, 734, 751, 759
AluBI	AGCT	5 cut(s)	126, 147, 207, 255, 302
AluI	AGCT	5 cut(s)	126, 147, 207, 255, 302
Alw26I	GTCTC	2 cut(s)	274, 343
AlwI	GGATC	5 cut(s)	3, 137, 321, 887, 907
AoxI	GGCC	5 cut(s)	36, 89, 670, 710, 798
ApeKI	GCWGC	1 cut(s)	562
ArsI	GACNNNNNNTTYG	2 cut(s)	337, 369
AspLEI	GCGC	1 cut(s)	445
AspS9I	GGNCC	3 cut(s)	98, 136, 799
AsuHPI	GGTGA	4 cut(s)	610, 690, 696, 724
AvaII	GGWCC	2 cut(s)	98, 136
BanI	GGYRCC	2 cut(s)	428, 538
BanII	GRGCYC	1 cut(s)	362
BbsI	GAAGAC	1 cut(s)	827
BbvI	GCAGC	1 cut(s)	574
BccI	CCATC	4 cut(s)	401, 459, 595, 944
BceAI	ACGGC	1 cut(s)	813
BciT130I	CCWGG	4 cut(s)	57, 736, 753, 761
BciVI	GTATCC	1 cut(s)	467
BclI	TGATCA	1 cut(s)	645
BcoDI	GTCTC	2 cut(s)	274, 343
BfaI	CTAG	1 cut(s)	29
BfuAI	ACCTGC	1 cut(s)	556
BfuI	GTATCC	1 cut(s)	467
BglII	AGATCT	1 cut(s)	498
BisI	GCNGC	5 cut(s)	557, 560, 563, 667, 670
BlsI	GCNGC	5 cut(s)	558, 561, 564, 668, 671
Bme1390I	CCNGG	4 cut(s)	57, 736, 753, 761
Bme18I	GGWCC	2 cut(s)	98, 136
BmeRI	GACNNNNNGTC	1 cut(s)	65
BmgT120I	GGNCC	3 cut(s)	98, 136, 799
BmiI	GGNNCC	4 cut(s)	137, 411, 430, 540
BmrFI	CCNGG	4 cut(s)	57, 736, 753, 761
BpiI	GAAGAC	1 cut(s)	827
BplI	GAGNNNNNCTC	2 cut(s)	314, 346
BpmI	CTGGAG	1 cut(s)	743
BsaJI	CCNNGG	5 cut(s)	86, 707, 735, 760, 902
BsaXI	ACNNNNNCTCC	2 cut(s)	394, 424
Bsc4I	CCNNNNNNNGG	5 cut(s)	45, 176, 406, 466, 906
Bse118I	RCCGGY	2 cut(s)	176, 417
Bse1I	ACTGG	1 cut(s)	216
Bse3DI	GCAATG	2 cut(s)	430, 939
BseBI	CCWGG	4 cut(s)	57, 736, 753, 761
BseDI	CCNNGG	5 cut(s)	86, 707, 735, 760, 902
BseLI	CCNNNNNNNGG	5 cut(s)	45, 176, 406, 466, 906
BseMI	GCAATG	2 cut(s)	430, 939
BseMII	CTCAG	2 cut(s)	375, 627
BseNI	ACTGG	1 cut(s)	216
BseRI	GAGGAG	4 cut(s)	586, 599, 620, 714
BseXI	GCAGC	1 cut(s)	574
Bsh1236I	CGCG	1 cut(s)	66
BshFI	GGCC	5 cut(s)	38, 91, 672, 712, 800
BshNI	GGYRCC	2 cut(s)	428, 538
BsiSI	CCGG	2 cut(s)	177, 418
BslI	CCNNNNNNNGG	5 cut(s)	45, 176, 406, 466, 906
BsmAI	GTCTC	2 cut(s)	274, 343
BsmBI	CGTCTC	1 cut(s)	343
BsmI	GAATGC	1 cut(s)	371
BsnI	GGCC	5 cut(s)	38, 91, 672, 712, 800
Bsp1286I	GDGCHC	1 cut(s)	362
Bsp143I	GATC	7 cut(s)	8, 129, 326, 498, 645, 892, 912
BspACI	CCGC	7 cut(s)	32, 557, 560, 666, 669, 896, 916
BspANI	GGCC	5 cut(s)	38, 91, 672, 712, 800
BspCNI	CTCAG	2 cut(s)	376, 628
BspFNI	CGCG	1 cut(s)	66
BspLI	GGNNCC	4 cut(s)	137, 411, 430, 540
BspMI	ACCTGC	1 cut(s)	556
BspPI	GGATC	5 cut(s)	3, 137, 321, 887, 907
BspT107I	GGYRCC	2 cut(s)	428, 538
BsrDI	GCAATG	2 cut(s)	430, 939
BsrFI	RCCGGY	2 cut(s)	176, 417
BsrI	ACTGG	1 cut(s)	216
BssAI	RCCGGY	2 cut(s)	176, 417
BssECI	CCNNGG	5 cut(s)	86, 707, 735, 760, 902
BssMI	GATC	7 cut(s)	8, 129, 326, 498, 645, 892, 912
BssT1I	CCWWGG	1 cut(s)	707
Bst2UI	CCWGG	4 cut(s)	57, 736, 753, 761
Bst4CI	ACNGT	4 cut(s)	277, 352, 538, 828
Bst6I	CTCTTC	1 cut(s)	337
BstC8I	GCNNGC	2 cut(s)	304, 773
BstDEI	CTNAG	3 cut(s)	143, 384, 636
BstFNI	CGCG	1 cut(s)	66
BstHHI	GCGC	1 cut(s)	445
BstKTI	GATC	7 cut(s)	11, 132, 329, 501, 648, 895, 915
BstMAI	GTCTC	2 cut(s)	274, 343
BstMBI	GATC	7 cut(s)	8, 129, 326, 498, 645, 892, 912
BstMWI	GCNNNNNNNGC	4 cut(s)	186, 252, 366, 562
BstNI	CCWGG	4 cut(s)	57, 736, 753, 761
BstNSI	RCATGY	1 cut(s)	313
BstSCI	CCNGG	4 cut(s)	55, 734, 751, 759
BstUI	CGCG	1 cut(s)	66
BstV1I	GCAGC	1 cut(s)	574
BstV2I	GAAGAC	1 cut(s)	827
BstX2I	RGATCY	2 cut(s)	8, 498
BstXI	CCANNNNNNTGG	1 cut(s)	767
BstYI	RGATCY	2 cut(s)	8, 498
BsuI	GTATCC	1 cut(s)	467
BsuRI	GGCC	5 cut(s)	38, 91, 672, 712, 800
BtgZI	GCGATG	1 cut(s)	478
BtsI	GCAGTG	2 cut(s)	253, 940
BtsIMutI	CAGTG	3 cut(s)	223, 253, 940
BveI	ACCTGC	1 cut(s)	556
Cac8I	GCNNGC	2 cut(s)	304, 773
CfoI	GCGC	1 cut(s)	445
Cfr10I	RCCGGY	2 cut(s)	176, 417
Cfr13I	GGNCC	3 cut(s)	98, 136, 799
CseI	GACGC	1 cut(s)	55
CviAII	CATG	2 cut(s)	310, 782
DdeI	CTNAG	3 cut(s)	143, 384, 636
DpnI	GATC	7 cut(s)	10, 131, 328, 500, 647, 894, 914
DpnII	GATC	7 cut(s)	8, 129, 326, 498, 645, 892, 912
DriI	GACNNNNNGTC	1 cut(s)	65
EaeI	YGGCCR	1 cut(s)	89
Eam1104I	CTCTTC	1 cut(s)	337
Eam1105I	GACNNNNNGTC	1 cut(s)	65
EarI	CTCTTC	1 cut(s)	337
EciI	GGCGGA	1 cut(s)	885
Eco130I	CCWWGG	1 cut(s)	707
Eco24I	GRGCYC	1 cut(s)	362
Eco32I	GATATC	1 cut(s)	156
Eco47I	GGWCC	2 cut(s)	98, 136
Eco57I	CTGAAG	2 cut(s)	633, 659
EcoRII	CCWGG	4 cut(s)	55, 734, 751, 759
EcoRV	GATATC	1 cut(s)	156
EcoT14I	CCWWGG	1 cut(s)	707
EcoT38I	GRGCYC	1 cut(s)	362
ErhI	CCWWGG	1 cut(s)	707
Esp3I	CGTCTC	1 cut(s)	343
FaeI	CATG	2 cut(s)	313, 785
FaiI	YATR	8 cut(s)	42, 194, 230, 311, 516, 528, 650, 783
FatI	CATG	2 cut(s)	309, 781
FbaI	TGATCA	1 cut(s)	645
Fnu4HI	GCNGC	5 cut(s)	557, 560, 563, 667, 670
FriOI	GRGCYC	1 cut(s)	362
Fsp4HI	GCNGC	5 cut(s)	557, 560, 563, 667, 670
FspBI	CTAG	1 cut(s)	29
FspI	TGCGCA	1 cut(s)	444
GlaI	GCGC	1 cut(s)	444
GluI	GCNGC	5 cut(s)	557, 560, 563, 667, 670
GsuI	CTGGAG	1 cut(s)	743
HaeIII	GGCC	5 cut(s)	38, 91, 672, 712, 800
HapII	CCGG	2 cut(s)	177, 418
HgaI	GACGC	1 cut(s)	55
HhaI	GCGC	1 cut(s)	445
Hin1II	CATG	2 cut(s)	313, 785
Hin6I	GCGC	1 cut(s)	443
HinP1I	GCGC	1 cut(s)	443
HindIII	AAGCTT	1 cut(s)	253
HinfI	GANTC	9 cut(s)	284, 372, 389, 640, 679, 756, 854, 881, 928
HpaII	CCGG	2 cut(s)	177, 418
HphI	GGTGA	4 cut(s)	610, 690, 696, 724
Hpy188III	TCNNGA	1 cut(s)	120
Hpy99I	CGWCG	2 cut(s)	71, 281
HpyAV	CCTTC	4 cut(s)	608, 683, 705, 711
HpyCH4III	ACNGT	4 cut(s)	277, 352, 538, 828
HpyCH4IV	ACGT	1 cut(s)	660
HpyCH4V	TGCA	4 cut(s)	423, 551, 775, 944
HpyF10VI	GCNNNNNNNGC	4 cut(s)	186, 252, 366, 562
HpyF3I	CTNAG	3 cut(s)	143, 384, 636
HpySE526I	ACGT	1 cut(s)	660
Hsp92II	CATG	2 cut(s)	313, 785
HspAI	GCGC	1 cut(s)	443
Ksp22I	TGATCA	1 cut(s)	645
Kzo9I	GATC	7 cut(s)	8, 129, 326, 498, 645, 892, 912
LmnI	GCTCC	1 cut(s)	415
Lsp1109I	GCAGC	1 cut(s)	574
MaeI	CTAG	1 cut(s)	29
MaeII	ACGT	1 cut(s)	660
MaeIII	GTNAC	4 cut(s)	199, 503, 532, 656
MalI	GATC	7 cut(s)	10, 131, 328, 500, 647, 894, 914
MboI	GATC	7 cut(s)	8, 129, 326, 498, 645, 892, 912
MboII	GAAGA	3 cut(s)	324, 827, 833
MflI	RGATCY	2 cut(s)	8, 498
MhlI	GDGCHC	1 cut(s)	362
MluCI	AATT	5 cut(s)	115, 472, 716, 728, 809
MlyI	GAGTC	3 cut(s)	383, 750, 890
MmeI	TCCRAC	2 cut(s)	163, 864
MseI	TTAA	1 cut(s)	104
MspI	CCGG	2 cut(s)	177, 418
MspR9I	CCNGG	4 cut(s)	57, 736, 753, 761
Mva1269I	GAATGC	1 cut(s)	371
MvaI	CCWGG	4 cut(s)	57, 736, 753, 761
MvnI	CGCG	1 cut(s)	66
MwoI	GCNNNNNNNGC	4 cut(s)	186, 252, 366, 562
NdeII	GATC	7 cut(s)	8, 129, 326, 498, 645, 892, 912
NlaIII	CATG	2 cut(s)	313, 785
NlaIV	GGNNCC	4 cut(s)	137, 411, 430, 540
NmeAIII	GCCGAG	1 cut(s)	67
NmuCI	GTSAC	1 cut(s)	199
NsbI	TGCGCA	1 cut(s)	444
NspI	RCATGY	1 cut(s)	313
PaqCI	CACCTGC	1 cut(s)	556
PcsI	WCGNNNNNNNCGW	1 cut(s)	118
PctI	GAATGC	1 cut(s)	371
PfeI	GAWTC	6 cut(s)	284, 372, 640, 679, 854, 928
PfoI	TCCNGGA	1 cut(s)	751
PkrI	GCNGC	5 cut(s)	558, 561, 564, 668, 671
PleI	GAGTC	3 cut(s)	383, 750, 889
PpsI	GAGTC	3 cut(s)	383, 750, 889
PsiI	TTATAA	2 cut(s)	194, 230
Psp6I	CCWGG	4 cut(s)	55, 734, 751, 759
PspGI	CCWGG	4 cut(s)	55, 734, 751, 759
PspN4I	GGNNCC	4 cut(s)	137, 411, 430, 540
PspPI	GGNCC	3 cut(s)	98, 136, 799
PsuI	RGATCY	2 cut(s)	8, 498
SaqAI	TTAA	1 cut(s)	104
SatI	GCNGC	5 cut(s)	557, 560, 563, 667, 670
Sau3AI	GATC	7 cut(s)	8, 129, 326, 498, 645, 892, 912
Sau96I	GGNCC	3 cut(s)	98, 136, 799
SchI	GAGTC	3 cut(s)	383, 750, 890
ScrFI	CCNGG	4 cut(s)	57, 736, 753, 761
SduI	GDGCHC	1 cut(s)	362
SinI	GGWCC	2 cut(s)	98, 136
Sse9I	AATT	5 cut(s)	115, 472, 716, 728, 809
SsiI	CCGC	7 cut(s)	32, 557, 560, 666, 669, 896, 916
SspMI	CTAG	1 cut(s)	29
StyD4I	CCNGG	4 cut(s)	55, 734, 751, 759
StyI	CCWWGG	1 cut(s)	707
TaaI	ACNGT	4 cut(s)	277, 352, 538, 828
TaiI	ACGT	1 cut(s)	663
TaqI	TCGA	3 cut(s)	396, 844, 879
TasI	AATT	5 cut(s)	115, 472, 716, 728, 809
TauI	GCSGC	4 cut(s)	559, 562, 669, 672
TfiI	GAWTC	6 cut(s)	284, 372, 640, 679, 854, 928
Tru1I	TTAA	1 cut(s)	104
Tru9I	TTAA	1 cut(s)	104
TscAI	CASTG	3 cut(s)	223, 253, 940
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	1 cut(s)	562
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	2 cut(s)	770, 827
TspGWI	ACGGA	2 cut(s)	325, 419
TspRI	CASTG	3 cut(s)	223, 253, 940
VpaK11BI	GGWCC	2 cut(s)	98, 136
XceI	RCATGY	1 cut(s)	313
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.