Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003551.1

Orthogroup ID

OG0003694

Physical Location & Seq

Genomic Coordinates Forward (+)

24166 .. 26380

Gene Structure 2215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

atggagaattccagcactgataaatcggaggtctgcgtcgacgctgccgaagtagattcagaagaaatgacagaggacatggaaaccaaacacatgttggagcatgacccatccttctccaactcgtgcattgaatgccggatatgccaggtcgaggactccattgatgaaatggagtctccttgccggtgcaacggcaccctcaagtttgctcaccgagattgtatccagcaatggatcaacttgagttacaagaccacttgcgaaatttgtaaccagccgtatgagggtggttatacactaccggtaccgcccccagcaccaccggcacggcagcctaccaggagggaggccctggacactataagggctagaagagcgcatgtggcagtagatgcagaggtatatcgcgctcgacttaatgcggcaaatagtgccattttaggtcgaagttttgtgtgccgcattgctcctgtcattgttatctgtttatgcatcatcgtcataatgagtaacataggcggcgcccatcactttcgaattggatcaccttcaccttcaccgtctccctcacccaaccccctgggtttgaaaaacttctgctcgtccgacggcggcttgatgatcggtctgggtttgtcttgccgctatgtgggtatggttttgaggggctatgtggcggcgaaggcttgttggcaagagtgttcgcgtggtggcggtgtctactgggttccggcaggcgaggtttggggcgtagatcgacaggattggcaggcgtggctggatgcaatggaggagggtgctactcggatcatgtacggtgggttggagtatgggcttgcccagctgtcttgcagggcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008970 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009650 GO:0009987 GO:0010224 GO:0016298 GO:0016787 GO:0016788 GO:0034644 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0052689 GO:0071214 GO:0071478 GO:0071482 GO:0071493 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

287

Amino Acids

31.55

Weight (kDa)

5.23

Isoelectric Point (pI)

56.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	46 - 91	5.9e-14	RING-variant domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003694)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15710 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470
malus_domestica	MD09G1051400.v1.1 MD17G1041600.v1.1
prunus_persica	Prupe.3G267400_v2.0.a1
rosa_laevigata	RLG00000008079 RLG00000021771 RLG00000021779
rosa_multiflora	Rmu_co8372247.1_g000001 Rmu_co8415085.1_g000001 Rmu_sc0003354.1_g000020 Rmu_sc0003551.1_g000007
rosa_roxburghii	Rroxscaffold_1G00024980 Rroxscaffold_2G00083030 Rroxscaffold_5G00359110
rosa_rugosa	Rorug02G0533300.1 Rorug02G0533700 Rorug04G0132900 Rorug04G0133000
rosa_samantha	Rh2AG602500 Rh2BG615800 Rh2CG584200 Rh2DG626000 Rh2DG626900 Rh4AG193900 Rh4BG192400 Rh4CG204900 Rh4DG191600 Rh5BG374300
rosa_wichuraiana	Rw4G016500 Rw5G034110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	307
AccB1I	GGYRCC	3 cut(s)	197, 307, 524
AccI	GTMKAC	2 cut(s)	39, 723
AccII	CGCG	2 cut(s)	411, 709
AciI	CCGC	8 cut(s)	311, 425, 463, 522, 615, 646, 680, 717
AclWI	GGATC	3 cut(s)	245, 553, 818
AcsI	RAATTY	2 cut(s)	7, 267
AcyI	GRCGYC	1 cut(s)	525
AfaI	GTAC	2 cut(s)	309, 818
AfiI	CCNNNNNNNGG	3 cut(s)	154, 287, 652
AflIII	ACRYGT	1 cut(s)	93
AgeI	ACCGGT	1 cut(s)	304
AgsI	TTSAA	2 cut(s)	134, 592
AjnI	CCWGG	4 cut(s)	147, 341, 354, 582
AluBI	AGCT	1 cut(s)	847
AluI	AGCT	1 cut(s)	847
Alw26I	GTCTC	2 cut(s)	183, 570
AlwI	GGATC	3 cut(s)	245, 553, 818
AoxI	GGCC	2 cut(s)	351, 858
ApeKI	GCWGC	2 cut(s)	44, 334
ApoI	RAATTY	2 cut(s)	7, 267
AsiGI	ACCGGT	1 cut(s)	304
Asp700I	GAANNNNTTC	1 cut(s)	596
Asp718I	GGTACC	1 cut(s)	307
AspLEI	GCGC	3 cut(s)	382, 413, 527
AspS9I	GGNCC	2 cut(s)	352, 858
AsuHPI	GGTGA	5 cut(s)	206, 540, 546, 552, 564
AsuII	TTCGAA	1 cut(s)	538
BanI	GGYRCC	3 cut(s)	197, 307, 524
BauI	CACGAG	1 cut(s)	124
BbvI	GCAGC	2 cut(s)	31, 346
BccI	CCATC	2 cut(s)	118, 537
BceAI	ACGGC	4 cut(s)	211, 265, 347, 628
BciT130I	CCWGG	4 cut(s)	149, 343, 356, 584
BciVI	GTATCC	1 cut(s)	236
BcoDI	GTCTC	2 cut(s)	183, 570
BfaI	CTAG	2 cut(s)	372, 862
BfoI	RGCGCY	1 cut(s)	528
BfuI	GTATCC	1 cut(s)	236
BisI	GCNGC	8 cut(s)	45, 335, 426, 463, 523, 616, 646, 681
BlsI	GCNGC	8 cut(s)	46, 336, 427, 464, 524, 617, 647, 682
Bme1390I	CCNGG	4 cut(s)	149, 343, 356, 584
BmgT120I	GGNCC	2 cut(s)	352, 858
BmiI	GGNNCC	4 cut(s)	199, 309, 526, 732
BmrFI	CCNGG	4 cut(s)	149, 343, 356, 584
BmrI	ACTGGG	1 cut(s)	736
BmsI	GCATC	3 cut(s)	385, 504, 775
BmuI	ACTGGG	1 cut(s)	736
Bpu14I	TTCGAA	1 cut(s)	538
BpuEI	CTTGAG	2 cut(s)	188, 265
BsaHI	GRCGYC	1 cut(s)	525
BsaJI	CCNNGG	3 cut(s)	354, 582, 583
BsaWI	WCCGGW	1 cut(s)	304
Bsc4I	CCNNNNNNNGG	3 cut(s)	154, 287, 652
Bse118I	RCCGGY	3 cut(s)	186, 304, 325
Bse1I	ACTGG	1 cut(s)	731
Bse3DI	GCAATG	3 cut(s)	239, 465, 795
BseBI	CCWGG	4 cut(s)	149, 343, 356, 584
BseDI	CCNNGG	3 cut(s)	354, 582, 583
BseGI	GGATG	2 cut(s)	110, 790
BseLI	CCNNNNNNNGG	3 cut(s)	154, 287, 652
BseMI	GCAATG	3 cut(s)	239, 465, 795
BseNI	ACTGG	1 cut(s)	731
BseRI	GAGGAG	1 cut(s)	809
BseXI	GCAGC	2 cut(s)	31, 346
BseYI	CCCAGC	2 cut(s)	316, 843
Bsh1236I	CGCG	2 cut(s)	411, 709
BshFI	GGCC	2 cut(s)	353, 860
BshNI	GGYRCC	3 cut(s)	197, 307, 524
BshTI	ACCGGT	1 cut(s)	304
BsiSI	CCGG	5 cut(s)	139, 187, 305, 326, 734
BslI	CCNNNNNNNGG	3 cut(s)	154, 287, 652
BsmAI	GTCTC	2 cut(s)	183, 570
BsmBI	CGTCTC	1 cut(s)	570
BsmI	GAATGC	1 cut(s)	140
BsnI	GGCC	2 cut(s)	353, 860
Bsp119I	TTCGAA	1 cut(s)	538
Bsp143I	GATC	5 cut(s)	237, 545, 624, 757, 810
BspACI	CCGC	8 cut(s)	311, 425, 463, 522, 615, 646, 680, 717
BspANI	GGCC	2 cut(s)	353, 860
BspFNI	CGCG	2 cut(s)	411, 709
BspLI	GGNNCC	4 cut(s)	199, 309, 526, 732
BspPI	GGATC	3 cut(s)	245, 553, 818
BspQI	GCTCTTC	1 cut(s)	370
BspT104I	TTCGAA	1 cut(s)	538
BspT107I	GGYRCC	3 cut(s)	197, 307, 524
BsrDI	GCAATG	3 cut(s)	239, 465, 795
BsrFI	RCCGGY	3 cut(s)	186, 304, 325
BsrI	ACTGG	1 cut(s)	731
BssAI	RCCGGY	3 cut(s)	186, 304, 325
BssECI	CCNNGG	3 cut(s)	354, 582, 583
BssMI	GATC	5 cut(s)	237, 545, 624, 757, 810
BssNI	GRCGYC	1 cut(s)	525
BssSI	CACGAG	1 cut(s)	124
Bst2BI	CACGAG	1 cut(s)	124
Bst2UI	CCWGG	4 cut(s)	149, 343, 356, 584
Bst4CI	ACNGT	2 cut(s)	564, 821
Bst6I	CTCTTC	1 cut(s)	370
BstACI	GRCGYC	1 cut(s)	525
BstAPI	GCANNNNNTGC	3 cut(s)	135, 395, 434
BstBI	TTCGAA	1 cut(s)	538
BstC8I	GCNNGC	3 cut(s)	739, 774, 840
BstF5I	GGATG	2 cut(s)	110, 790
BstFNI	CGCG	2 cut(s)	411, 709
BstH2I	RGCGCY	1 cut(s)	528
BstHHI	GCGC	3 cut(s)	382, 413, 527
BstKTI	GATC	5 cut(s)	240, 548, 627, 760, 813
BstMAI	GTCTC	2 cut(s)	183, 570
BstMBI	GATC	5 cut(s)	237, 545, 624, 757, 810
BstNI	CCWGG	4 cut(s)	149, 343, 356, 584
BstNSI	RCATGY	2 cut(s)	97, 386
BstSCI	CCNGG	4 cut(s)	147, 341, 354, 582
BstUI	CGCG	2 cut(s)	411, 709
BstV1I	GCAGC	2 cut(s)	31, 346
BstXI	CCANNNNNNTGG	1 cut(s)	583
BsuI	GTATCC	1 cut(s)	236
BsuRI	GGCC	2 cut(s)	353, 860
BtsCI	GGATG	2 cut(s)	110, 790
BtsIMutI	CAGTG	1 cut(s)	15
Cac8I	GCNNGC	3 cut(s)	739, 774, 840
CfoI	GCGC	3 cut(s)	382, 413, 527
Cfr10I	RCCGGY	3 cut(s)	186, 304, 325
Cfr13I	GGNCC	2 cut(s)	352, 858
CseI	GACGC	2 cut(s)	25, 50
Csp6I	GTAC	2 cut(s)	308, 817
CspAI	ACCGGT	1 cut(s)	304
CviAII	CATG	5 cut(s)	79, 94, 104, 383, 814
CviQI	GTAC	2 cut(s)	308, 817
DinI	GGCGCC	1 cut(s)	526
DpnI	GATC	5 cut(s)	239, 547, 626, 759, 812
DpnII	GATC	5 cut(s)	237, 545, 624, 757, 810
Eam1104I	CTCTTC	1 cut(s)	370
EarI	CTCTTC	1 cut(s)	370
EcoO109I	RGGNCCY	2 cut(s)	352, 858
EcoRI	GAATTC	1 cut(s)	7
EcoRII	CCWGG	4 cut(s)	147, 341, 354, 582
EcoT22I	ATGCAT	1 cut(s)	497
EgeI	GGCGCC	1 cut(s)	526
EheI	GGCGCC	1 cut(s)	526
Esp3I	CGTCTC	1 cut(s)	570
FaeI	CATG	5 cut(s)	82, 97, 107, 386, 817
FatI	CATG	5 cut(s)	78, 93, 103, 382, 813
FblI	GTMKAC	2 cut(s)	39, 723
Fnu4HI	GCNGC	8 cut(s)	45, 335, 426, 463, 523, 616, 646, 681
FokI	GGATG	2 cut(s)	97, 797
Fsp4HI	GCNGC	8 cut(s)	45, 335, 426, 463, 523, 616, 646, 681
FspBI	CTAG	2 cut(s)	372, 862
GlaI	GCGC	3 cut(s)	381, 412, 526
GluI	GCNGC	8 cut(s)	45, 335, 426, 463, 523, 616, 646, 681
GsaI	CCCAGC	2 cut(s)	320, 847
HaeII	RGCGCY	1 cut(s)	528
HaeIII	GGCC	2 cut(s)	353, 860
HapII	CCGG	5 cut(s)	139, 187, 305, 326, 734
HgaI	GACGC	2 cut(s)	25, 50
HhaI	GCGC	3 cut(s)	382, 413, 527
Hin1I	GRCGYC	1 cut(s)	525
Hin1II	CATG	5 cut(s)	82, 97, 107, 386, 817
Hin6I	GCGC	3 cut(s)	380, 411, 525
HinP1I	GCGC	3 cut(s)	380, 411, 525
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HinfI	GANTC	3 cut(s)	56, 158, 176
HpaII	CCGG	5 cut(s)	139, 187, 305, 326, 734
HphI	GGTGA	5 cut(s)	206, 540, 546, 552, 564
Hpy166II	GTNNAC	2 cut(s)	40, 724
Hpy188I	TCNGA	4 cut(s)	28, 61, 610, 810
Hpy8I	GTNNAC	2 cut(s)	40, 724
Hpy99I	CGWCG	3 cut(s)	41, 44, 614
HpyAV	CCTTC	4 cut(s)	124, 561, 567, 679
HpyCH4III	ACNGT	2 cut(s)	564, 821
HpyCH4V	TGCA	6 cut(s)	129, 192, 398, 495, 788, 855
Hsp92I	GRCGYC	1 cut(s)	525
Hsp92II	CATG	5 cut(s)	82, 97, 107, 386, 817
HspAI	GCGC	3 cut(s)	380, 411, 525
KasI	GGCGCC	1 cut(s)	524
KpnI	GGTACC	1 cut(s)	311
Kzo9I	GATC	5 cut(s)	237, 545, 624, 757, 810
LguI	GCTCTTC	1 cut(s)	370
LmnI	GCTCC	2 cut(s)	100, 475
Lsp1109I	GCAGC	2 cut(s)	31, 346
LweI	GCATC	3 cut(s)	385, 504, 775
MaeI	CTAG	2 cut(s)	372, 862
MaeIII	GTNAC	3 cut(s)	248, 272, 512
MalI	GATC	5 cut(s)	239, 547, 626, 759, 812
MboI	GATC	5 cut(s)	237, 545, 624, 757, 810
MboII	GAAGA	2 cut(s)	74, 387
MluCI	AATT	3 cut(s)	7, 267, 540
Mly113I	GGCGCC	1 cut(s)	525
MlyI	GAGTC	2 cut(s)	152, 185
MmeI	TCCRAC	4 cut(s)	78, 144, 633, 807
Mph1103I	ATGCAT	1 cut(s)	497
MroXI	GAANNNNTTC	1 cut(s)	596
MseI	TTAA	1 cut(s)	420
MspA1I	CMGCKG	1 cut(s)	847
MspI	CCGG	5 cut(s)	139, 187, 305, 326, 734
MspR9I	CCNGG	4 cut(s)	149, 343, 356, 584
Mva1269I	GAATGC	1 cut(s)	140
MvaI	CCWGG	4 cut(s)	149, 343, 356, 584
MvnI	CGCG	2 cut(s)	411, 709
NarI	GGCGCC	1 cut(s)	525
NdeII	GATC	5 cut(s)	237, 545, 624, 757, 810
NlaIII	CATG	5 cut(s)	82, 97, 107, 386, 817
NlaIV	GGNNCC	4 cut(s)	199, 309, 526, 732
NsiI	ATGCAT	1 cut(s)	497
NspI	RCATGY	2 cut(s)	97, 386
NspV	TTCGAA	1 cut(s)	538
PasI	CCCWGGG	1 cut(s)	583
PciI	ACATGT	1 cut(s)	93
PciSI	GCTCTTC	1 cut(s)	370
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PctI	GAATGC	1 cut(s)	140
PdmI	GAANNNNTTC	1 cut(s)	596
PfeI	GAWTC	1 cut(s)	56
PinAI	ACCGGT	1 cut(s)	304
PkrI	GCNGC	8 cut(s)	46, 336, 427, 464, 524, 617, 647, 682
PleI	GAGTC	2 cut(s)	152, 184
PluTI	GGCGCC	1 cut(s)	528
PpsI	GAGTC	2 cut(s)	152, 184
PscI	ACATGT	1 cut(s)	93
Psp6I	CCWGG	4 cut(s)	147, 341, 354, 582
PspFI	CCCAGC	2 cut(s)	316, 843
PspGI	CCWGG	4 cut(s)	147, 341, 354, 582
PspN4I	GGNNCC	4 cut(s)	199, 309, 526, 732
PspPI	GGNCC	2 cut(s)	352, 858
PvuII	CAGCTG	1 cut(s)	847
RsaI	GTAC	2 cut(s)	309, 818
RsaNI	GTAC	2 cut(s)	308, 817
SalI	GTCGAC	1 cut(s)	38
SapI	GCTCTTC	1 cut(s)	370
SaqAI	TTAA	1 cut(s)	420
SatI	GCNGC	8 cut(s)	45, 335, 426, 463, 523, 616, 646, 681
Sau3AI	GATC	5 cut(s)	237, 545, 624, 757, 810
Sau96I	GGNCC	2 cut(s)	352, 858
SchI	GAGTC	2 cut(s)	152, 185
ScrFI	CCNGG	4 cut(s)	149, 343, 356, 584
SetI	ASST	8 cut(s)	33, 153, 405, 448, 553, 559, 747, 849
SfaNI	GCATC	3 cut(s)	385, 504, 775
SfoI	GGCGCC	1 cut(s)	526
SfuI	TTCGAA	1 cut(s)	538
SgrDI	CGTCGACG	1 cut(s)	38
SmlI	CTYRAG	2 cut(s)	203, 244
SmoI	CTYRAG	2 cut(s)	203, 244
Sse9I	AATT	3 cut(s)	7, 267, 540
SsiI	CCGC	8 cut(s)	311, 425, 463, 522, 615, 646, 680, 717
SspDI	GGCGCC	1 cut(s)	524
SspMI	CTAG	2 cut(s)	372, 862
StyD4I	CCNGG	4 cut(s)	147, 341, 354, 582
TaaI	ACNGT	2 cut(s)	564, 821
TaqI	TCGA	6 cut(s)	39, 153, 415, 448, 538, 760
TaqII	GACCGA	1 cut(s)	617
TasI	AATT	3 cut(s)	7, 267, 540
TauI	GCSGC	6 cut(s)	428, 465, 525, 618, 648, 683
TfiI	GAWTC	1 cut(s)	56
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TscAI	CASTG	1 cut(s)	22
TseI	GCWGC	2 cut(s)	44, 334
TspDTI	ATGAA	1 cut(s)	183
TspRI	CASTG	1 cut(s)	22
XapI	RAATTY	2 cut(s)	7, 267
XceI	RCATGY	2 cut(s)	97, 386
XcmI	CCANNNNNNNNNTGG	2 cut(s)	94, 169
XmiI	GTMKAC	2 cut(s)	39, 723
XmnI	GAANNNNTTC	1 cut(s)	596
XspI	CTAG	2 cut(s)	372, 862
Zsp2I	ATGCAT	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.