Rmu_sc0003624.1_g000012

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003624.1
OG0003132
Physical Location & Seq
Forward (+)
43012 .. 44549
1538 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1167 bp
atgtggcatccacgtgttagacgcgtagaggtcttttcaaccaattcggggcgggtcaaccttcggaggtttcgagggtttgaaattatggacatggatgttgatgaaccaaccaaagaagaaaagcaaggaaagcccataatcgtagtattgatgggttcacccggtagcggtaagtccacattctgcgaacaagtcatgggctcctcagatactatcaagaatgggaaagccggaacgaaagctcagtgtatagagagtgcgaggagtgcattgcgggaaggaaagagtgtgtttatagatagatgcaatctggagaaagagcaaagatatgagtttgtgaatcttggtggtcctcaagtggatgttcatgcattggtgcttgatcttcctgctaagctttgtatatcgcggtcagtgaagcgaacgggacatgaggggaacttgcaaggcggaaaagctgcggctgttgtgaatagaatgctgcagaagaaagaattgccgaatctgagcgaagggtttggtaggatcactttttgccagaatgagagtgatgttgaatctgccattcgtacatatagtggactcggtccgttggatacacttcctcatgggacttttggccagaagagcccaggtgcaaaagttcaacttggtataatgaaattcctaaagaaaacagatgctcctgctaatactgaatcgacttcgaacaaggttcaggattctaatgcttctcaaattactgggggaaaggataccagtgtgaaaggaacaggtttgtttacggaaagtggtagtatggagtccaagaaaggtaaacggcctgttgtaggttctgctggcactgatgtctctcttgacaatgctcccaccctggcatttccatctatttccacagcagattttcagtttgaccttgagaaggcatctgacattattgtagagaaagttgcagaatttgtaaataaacttggaaatgcagatgctagacttgttttagtggacttgacacataaatcgaagattttatccttggtgagggctaaagcttcacagaaaaaccttgactccaacaggttcttcacatttgtaggagatatcactaagcttcattcagaaggaggtcttcgctgcaatgtgatagctaatgctgctaactgctaa

Protein Analysis

388

Amino Acids

41.96

Weight (kDa)

9.19

Isoelectric Point (pI)

33.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_33 PF13671 49 - 166 4.3e-09 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 24, 412
AciI CCGC 6 cut(s) 52, 171, 277, 412, 453, 464
AclWI GGATC 1 cut(s) 536
AcoI YGGCCR 1 cut(s) 622
AcsI RAATTY 2 cut(s) 665, 959
AcvI CACGTG 1 cut(s) 14
AfaI GTAC 1 cut(s) 574
AfiI CCNNNNNNNGG 5 cut(s) 48, 170, 833, 925, 1041
AflIII ACRYGT 2 cut(s) 13, 22
AgsI TTSAA 4 cut(s) 39, 83, 560, 650
AjnI CCWGG 2 cut(s) 634, 876
AjuI GAANNNNNNNTTGG 2 cut(s) 1067, 1099
AluBI AGCT 6 cut(s) 245, 400, 461, 1052, 1111, 1148
AluI AGCT 6 cut(s) 245, 400, 461, 1052, 1111, 1148
Alw26I GTCTC 1 cut(s) 859
AlwI GGATC 1 cut(s) 536
AoxI GGCC 2 cut(s) 622, 824
ApeKI GCWGC 4 cut(s) 461, 484, 1134, 1154
ApoI RAATTY 2 cut(s) 665, 959
AspS9I GGNCC 2 cut(s) 353, 590
AsuC2I CCSGG 1 cut(s) 165
AsuHPI GGTGA 2 cut(s) 153, 1051
AsuII TTCGAA 1 cut(s) 710
AvaII GGWCC 2 cut(s) 353, 590
BaeI ACNNNNGTAYC 2 cut(s) 750, 783
BalI TGGCCA 1 cut(s) 624
BanII GRGCYC 2 cut(s) 206, 635
BbrPI CACGTG 1 cut(s) 14
BbsI GAAGAC 1 cut(s) 1121
BbvI GCAGC 4 cut(s) 448, 471, 1121, 1141
BccI CCATC 2 cut(s) 148, 895
BceAI ACGGC 1 cut(s) 839
BciT130I CCWGG 2 cut(s) 636, 878
BciVI GTATCC 2 cut(s) 592, 751
BcnI CCSGG 1 cut(s) 165
BcoDI GTCTC 1 cut(s) 859
BfaI CTAG 1 cut(s) 990
BfmI CTRYAG 1 cut(s) 485
BfuI GTATCC 2 cut(s) 592, 751
BisI GCNGC 5 cut(s) 462, 465, 485, 1135, 1155
BlpI GCTNAGC 1 cut(s) 396
BlsI GCNGC 5 cut(s) 463, 466, 486, 1136, 1156
Bme1390I CCNGG 3 cut(s) 165, 636, 878
Bme18I GGWCC 2 cut(s) 353, 590
BmgT120I GGNCC 2 cut(s) 353, 590
BmiI GGNNCC 1 cut(s) 205
BmrFI CCNGG 3 cut(s) 165, 636, 878
BmrI ACTGGG 1 cut(s) 756
BmsI GCATC 5 cut(s) 16, 296, 673, 938, 976
BmuI ACTGGG 1 cut(s) 756
BpiI GAAGAC 1 cut(s) 1121
BpmI CTGGAG 1 cut(s) 335
Bpu1102I GCTNAGC 1 cut(s) 396
Bpu14I TTCGAA 1 cut(s) 710
BpuEI CTTGAG 2 cut(s) 342, 941
BpuMI CCSGG 1 cut(s) 165
BsaAI YACGTR 1 cut(s) 14
BsaJI CCNNGG 3 cut(s) 634, 876, 1035
BsaXI ACNNNNNCTCC 4 cut(s) 670, 700, 1055, 1085
Bsc4I CCNNNNNNNGG 5 cut(s) 48, 170, 833, 925, 1041
Bse1I ACTGG 2 cut(s) 751, 762
Bse3DI GCAATG 2 cut(s) 272, 1144
BseBI CCWGG 2 cut(s) 636, 878
BseDI CCNNGG 3 cut(s) 634, 876, 1035
BseGI GGATG 3 cut(s) 7, 103, 370
BseLI CCNNNNNNNGG 5 cut(s) 48, 170, 833, 925, 1041
BseMI GCAATG 2 cut(s) 272, 1144
BseMII CTCAG 3 cut(s) 222, 260, 500
BseNI ACTGG 2 cut(s) 751, 762
BseRI GAGGAG 2 cut(s) 196, 280
BseXI GCAGC 4 cut(s) 448, 471, 1121, 1141
Bsh1236I CGCG 2 cut(s) 24, 412
BshFI GGCC 2 cut(s) 624, 826
BsiSI CCGG 2 cut(s) 165, 234
BslFI GGGAC 2 cut(s) 444, 628
BslI CCNNNNNNNGG 5 cut(s) 48, 170, 833, 925, 1041
BsmAI GTCTC 1 cut(s) 859
BsmFI GGGAC 2 cut(s) 444, 628
BsmI GAATGC 1 cut(s) 486
BsnI GGCC 2 cut(s) 624, 826
Bsp119I TTCGAA 1 cut(s) 710
Bsp1286I GDGCHC 2 cut(s) 206, 635
Bsp143I GATC 2 cut(s) 385, 528
Bsp1720I GCTNAGC 1 cut(s) 396
BspACI CCGC 6 cut(s) 52, 171, 277, 412, 453, 464
BspANI GGCC 2 cut(s) 624, 826
BspCNI CTCAG 3 cut(s) 221, 259, 501
BspFNI CGCG 2 cut(s) 24, 412
BspLI GGNNCC 1 cut(s) 205
BspMAI CTGCAG 1 cut(s) 489
BspPI GGATC 1 cut(s) 536
BspQI GCTCTTC 1 cut(s) 623
BspT104I TTCGAA 1 cut(s) 710
BsrDI GCAATG 2 cut(s) 272, 1144
BsrI ACTGG 2 cut(s) 751, 762
BssECI CCNNGG 3 cut(s) 634, 876, 1035
BssMI GATC 2 cut(s) 385, 528
BssT1I CCWWGG 1 cut(s) 1035
Bst2UI CCWGG 2 cut(s) 636, 878
Bst6I CTCTTC 1 cut(s) 623
BstBAI YACGTR 1 cut(s) 14
BstBI TTCGAA 1 cut(s) 710
BstC8I GCNNGC 1 cut(s) 844
BstDEI CTNAG 5 cut(s) 208, 246, 396, 509, 1107
BstENI CCTNNNNNAGG 3 cut(s) 831, 923, 1039
BstF5I GGATG 3 cut(s) 7, 103, 370
BstFNI CGCG 2 cut(s) 24, 412
BstKTI GATC 2 cut(s) 388, 531
BstMAI GTCTC 1 cut(s) 859
BstMBI GATC 2 cut(s) 385, 528
BstMWI GCNNNNNNNGC 4 cut(s) 133, 269, 630, 1154
BstNI CCWGG 2 cut(s) 636, 878
BstSCI CCNGG 3 cut(s) 163, 634, 876
BstSFI CTRYAG 1 cut(s) 485
BstUI CGCG 2 cut(s) 24, 412
BstV1I GCAGC 4 cut(s) 448, 471, 1121, 1141
BstV2I GAAGAC 1 cut(s) 1121
BsuI GTATCC 2 cut(s) 592, 751
BsuRI GGCC 2 cut(s) 624, 826
BtsCI GGATG 3 cut(s) 7, 103, 370
BtsIMutI CAGTG 4 cut(s) 254, 423, 769, 846
Cac8I GCNNGC 1 cut(s) 844
Cfr13I GGNCC 2 cut(s) 353, 590
CpoI CGGWCCG 1 cut(s) 590
CseI GACGC 1 cut(s) 30
Csp6I GTAC 1 cut(s) 573
CspI CGGWCCG 1 cut(s) 590
CviAII CATG 5 cut(s) 94, 199, 371, 434, 611
CviQI GTAC 1 cut(s) 573
DdeI CTNAG 5 cut(s) 208, 246, 396, 509, 1107
DpnI GATC 2 cut(s) 387, 530
DpnII GATC 2 cut(s) 385, 528
EaeI YGGCCR 1 cut(s) 622
Eam1104I CTCTTC 1 cut(s) 623
EarI CTCTTC 1 cut(s) 623
EciI GGCGGA 1 cut(s) 468
Eco130I CCWWGG 1 cut(s) 1035
Eco24I GRGCYC 2 cut(s) 206, 635
Eco32I GATATC 1 cut(s) 1102
Eco47I GGWCC 2 cut(s) 353, 590
Eco72I CACGTG 1 cut(s) 14
EcoNI CCTNNNNNAGG 3 cut(s) 831, 923, 1039
EcoRII CCWGG 2 cut(s) 634, 876
EcoRV GATATC 1 cut(s) 1102
EcoT14I CCWWGG 1 cut(s) 1035
EcoT22I ATGCAT 1 cut(s) 376
EcoT38I GRGCYC 2 cut(s) 206, 635
ErhI CCWWGG 1 cut(s) 1035
FaeI CATG 5 cut(s) 97, 202, 374, 437, 614
FalI AAGNNNNNCTT 4 cut(s) 636, 668, 1113, 1145
FaqI GGGAC 2 cut(s) 444, 628
FatI CATG 5 cut(s) 93, 198, 370, 433, 610
FauI CCCGC 2 cut(s) 45, 270
Fnu4HI GCNGC 5 cut(s) 462, 465, 485, 1135, 1155
FokI GGATG 2 cut(s) 110, 377
FriOI GRGCYC 2 cut(s) 206, 635
Fsp4HI GCNGC 5 cut(s) 462, 465, 485, 1135, 1155
FspBI CTAG 1 cut(s) 990
GluI GCNGC 5 cut(s) 462, 465, 485, 1135, 1155
GsuI CTGGAG 1 cut(s) 335
HaeIII GGCC 2 cut(s) 624, 826
HapII CCGG 2 cut(s) 165, 234
HgaI GACGC 1 cut(s) 30
Hin1II CATG 5 cut(s) 97, 202, 374, 437, 614
HincII GTYRAC 1 cut(s) 58
HindII GTYRAC 1 cut(s) 58
HindIII AAGCTT 3 cut(s) 398, 1050, 1109
HinfI GANTC 8 cut(s) 343, 505, 560, 585, 701, 725, 806, 1070
HpaII CCGG 2 cut(s) 165, 234
HphI GGTGA 2 cut(s) 153, 1051
Hpy166II GTNNAC 7 cut(s) 58, 161, 180, 584, 786, 821, 1006
Hpy188I TCNGA 5 cut(s) 66, 211, 510, 934, 1120
Hpy188III TCNNGA 4 cut(s) 220, 314, 722, 860
Hpy8I GTNNAC 7 cut(s) 58, 161, 180, 584, 786, 821, 1006
HpyAV CCTTC 5 cut(s) 71, 275, 509, 919, 1115
HpyCH4IV ACGT 1 cut(s) 13
HpyCH4V TGCA 9 cut(s) 272, 309, 374, 448, 487, 641, 956, 983, 1137
HpyF10VI GCNNNNNNNGC 4 cut(s) 133, 269, 630, 1154
HpyF3I CTNAG 5 cut(s) 208, 246, 396, 509, 1107
HpySE526I ACGT 1 cut(s) 13
Hsp92II CATG 5 cut(s) 97, 202, 374, 437, 614
Kzo9I GATC 2 cut(s) 385, 528
LguI GCTCTTC 1 cut(s) 623
LmnI GCTCC 3 cut(s) 209, 691, 874
Lsp1109I GCAGC 4 cut(s) 448, 471, 1121, 1141
LweI GCATC 5 cut(s) 16, 296, 673, 938, 976
MaeI CTAG 1 cut(s) 990
MaeII ACGT 1 cut(s) 13
MalI GATC 2 cut(s) 387, 530
MboI GATC 2 cut(s) 385, 528
MboII GAAGA 7 cut(s) 131, 380, 502, 640, 1036, 1075, 1121
MhlI GDGCHC 2 cut(s) 206, 635
MlsI TGGCCA 1 cut(s) 624
MluCI AATT 6 cut(s) 43, 84, 497, 665, 741, 959
MluI ACGCGT 1 cut(s) 22
MluNI TGGCCA 1 cut(s) 624
MlyI GAGTC 3 cut(s) 579, 815, 1064
MmeI TCCRAC 2 cut(s) 576, 1098
Mox20I TGGCCA 1 cut(s) 624
Mph1103I ATGCAT 1 cut(s) 376
MscI TGGCCA 1 cut(s) 624
MslI CAYNNNNRTG 1 cut(s) 12
Msp20I TGGCCA 1 cut(s) 624
MspI CCGG 2 cut(s) 165, 234
MspR9I CCNGG 3 cut(s) 165, 636, 878
Mva1269I GAATGC 1 cut(s) 486
MvaI CCWGG 2 cut(s) 636, 878
MvnI CGCG 2 cut(s) 24, 412
MwoI GCNNNNNNNGC 4 cut(s) 133, 269, 630, 1154
NciI CCSGG 1 cut(s) 165
NdeII GATC 2 cut(s) 385, 528
NlaIII CATG 5 cut(s) 97, 202, 374, 437, 614
NlaIV GGNNCC 1 cut(s) 205
NsiI ATGCAT 1 cut(s) 376
NspV TTCGAA 1 cut(s) 710
PciSI GCTCTTC 1 cut(s) 623
PcsI WCGNNNNNNNCGW 1 cut(s) 70
PctI GAATGC 1 cut(s) 486
PfeI GAWTC 5 cut(s) 343, 505, 560, 701, 725
PflFI GACNNNGTC 1 cut(s) 588
PkrI GCNGC 5 cut(s) 463, 466, 486, 1136, 1156
PleI GAGTC 3 cut(s) 579, 814, 1064
PmaCI CACGTG 1 cut(s) 14
PmlI CACGTG 1 cut(s) 14
PpsI GAGTC 3 cut(s) 579, 814, 1064
Ppu21I YACGTR 1 cut(s) 14
Psp6I CCWGG 2 cut(s) 634, 876
PspCI CACGTG 1 cut(s) 14
PspGI CCWGG 2 cut(s) 634, 876
PspN4I GGNNCC 1 cut(s) 205
PspPI GGNCC 2 cut(s) 353, 590
PstI CTGCAG 1 cut(s) 489
PsyI GACNNNGTC 1 cut(s) 588
RsaI GTAC 1 cut(s) 574
RsaNI GTAC 1 cut(s) 573
RseI CAYNNNNRTG 1 cut(s) 12
Rsr2I CGGWCCG 1 cut(s) 590
RsrII CGGWCCG 1 cut(s) 590
SapI GCTCTTC 1 cut(s) 623
SatI GCNGC 5 cut(s) 462, 465, 485, 1135, 1155
Sau3AI GATC 2 cut(s) 385, 528
Sau96I GGNCC 2 cut(s) 353, 590
SchI GAGTC 3 cut(s) 579, 815, 1064
ScrFI CCNGG 3 cut(s) 165, 636, 878
SduI GDGCHC 2 cut(s) 206, 635
SfaNI GCATC 5 cut(s) 16, 296, 673, 938, 976
SfcI CTRYAG 1 cut(s) 485
SfuI TTCGAA 1 cut(s) 710
SinI GGWCC 2 cut(s) 353, 590
SmiMI CAYNNNNRTG 1 cut(s) 12
SmlI CTYRAG 2 cut(s) 357, 920
SmoI CTYRAG 2 cut(s) 357, 920
Sse9I AATT 6 cut(s) 43, 84, 497, 665, 741, 959
SsiI CCGC 6 cut(s) 52, 171, 277, 412, 453, 464
SspMI CTAG 1 cut(s) 990
StyD4I CCNGG 3 cut(s) 163, 634, 876
StyI CCWWGG 1 cut(s) 1035
TaiI ACGT 1 cut(s) 16
TaqI TCGA 4 cut(s) 73, 704, 710, 1022
TaqII GACCGA 1 cut(s) 578
TasI AATT 6 cut(s) 43, 84, 497, 665, 741, 959
TauI GCSGC 1 cut(s) 467
TfiI GAWTC 5 cut(s) 343, 505, 560, 701, 725
TscAI CASTG 4 cut(s) 254, 423, 769, 853
TseI GCWGC 4 cut(s) 461, 484, 1134, 1154
TspDTI ATGAA 4 cut(s) 120, 359, 677, 1103
TspGWI ACGGA 2 cut(s) 582, 803
TspRI CASTG 4 cut(s) 254, 423, 769, 853
Tth111I GACNNNGTC 1 cut(s) 588
VpaK11BI GGWCC 2 cut(s) 353, 590
XagI CCTNNNNNAGG 3 cut(s) 831, 923, 1039
XapI RAATTY 2 cut(s) 665, 959
XspI CTAG 1 cut(s) 990
Zsp2I ATGCAT 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.