Rmu_sc0004354.1_g000003

Stress responsive A/B Barrel Domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004354.1
OG0004083
Physical Location & Seq
Forward (+)
9129 .. 10898
1770 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 579 bp
atggcttccctagaactagacatccttcctttcggagaccgtacgtactccgcctcgacgaccactctctcacggttccttccggctgaacgcctagtctcgctcaacaactcggcggccccaatttacgccgacgggtcgttgatcatcccagcaccagcaggttctttgactggtatcgggttagattgggagcttcagccccaagctgcttgtgccaagatgggagagttcaaacacttggtgatagttaagttcaaggcagatgtggtggtggaggagatcctcacagggctggagaagttggttgcggagattgatgctgttaagtcctatgaatggggacaggacttggagagccaggagatgctcacacaaggtttcactcatgccatcttgatgacattcgacaagaaggacgattacactctgtttctcagccaccctaaacatgcagacttttctggtacattttcgactgttatagaaaagattgtgctgcttgatttcccagctactcttgtcaagcctccaccaccaccacctccaccagcagcagaagttaaagaagaggtttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dabb

Protein Analysis

192

Amino Acids

20.94

Weight (kDa)

4.66

Isoelectric Point (pI)

42.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dabb PF07876 79 - 171 8.1e-20 Stress responsive A/B Barrel Domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 152
AciI CCGC 3 cut(s) 51, 116, 311
AclWI GGATC 1 cut(s) 277
AcuI CTGAAG 1 cut(s) 182
AdeI CACNNNGTG 1 cut(s) 244
AfaI GTAC 3 cut(s) 43, 47, 469
AfiI CCNNNNNNNGG 1 cut(s) 339
AgsI TTSAA 2 cut(s) 235, 259
AjnI CCWGG 1 cut(s) 360
AloI GAACNNNNNNTCC 1 cut(s) 38
AluBI AGCT 3 cut(s) 196, 209, 515
AluI AGCT 3 cut(s) 196, 209, 515
Alw26I GTCTC 2 cut(s) 30, 103
AlwI GGATC 1 cut(s) 277
AoxI GGCC 1 cut(s) 117
ApeKI GCWGC 3 cut(s) 209, 499, 554
AspS9I GGNCC 1 cut(s) 118
AsuHPI GGTGA 1 cut(s) 256
BarI GAAGNNNNNNTAC 2 cut(s) 407, 439
BbvI GCAGC 3 cut(s) 196, 486, 566
BccI CCATC 2 cut(s) 217, 401
BciT130I CCWGG 1 cut(s) 362
BclI TGATCA 1 cut(s) 144
BcoDI GTCTC 2 cut(s) 30, 103
BfaI CTAG 3 cut(s) 11, 17, 95
BfuAI ACCTGC 1 cut(s) 152
BisI GCNGC 4 cut(s) 117, 210, 500, 555
BlsI GCNGC 4 cut(s) 118, 211, 501, 556
Bme1390I CCNGG 1 cut(s) 362
BmgT120I GGNCC 1 cut(s) 118
BmiI GGNNCC 2 cut(s) 77, 120
BmrFI CCNGG 1 cut(s) 362
BmsI GCATC 2 cut(s) 310, 357
BpmI CTGGAG 1 cut(s) 317
BsaAI YACGTR 1 cut(s) 45
BsaI GGTCTC 1 cut(s) 30
Bsc4I CCNNNNNNNGG 1 cut(s) 339
Bse1I ACTGG 1 cut(s) 178
BseBI CCWGG 1 cut(s) 362
BseGI GGATG 2 cut(s) 21, 147
BseLI CCNNNNNNNGG 1 cut(s) 339
BseMII CTCAG 1 cut(s) 451
BseNI ACTGG 1 cut(s) 178
BseRI GAGGAG 1 cut(s) 293
BseXI GCAGC 3 cut(s) 196, 486, 566
BseYI CCCAGC 2 cut(s) 151, 511
BshFI GGCC 1 cut(s) 119
BsiSI CCGG 1 cut(s) 83
BsiWI CGTACG 1 cut(s) 41
BslFI GGGAC 1 cut(s) 357
BslI CCNNNNNNNGG 1 cut(s) 339
BsmAI GTCTC 2 cut(s) 30, 103
BsmFI GGGAC 1 cut(s) 357
BsnI GGCC 1 cut(s) 119
Bso31I GGTCTC 1 cut(s) 30
Bsp143I GATC 2 cut(s) 144, 282
BspACI CCGC 3 cut(s) 51, 116, 311
BspANI GGCC 1 cut(s) 119
BspCNI CTCAG 1 cut(s) 450
BspLI GGNNCC 2 cut(s) 77, 120
BspMI ACCTGC 1 cut(s) 152
BspPI GGATC 1 cut(s) 277
BspTNI GGTCTC 1 cut(s) 30
BsrI ACTGG 1 cut(s) 178
BssMI GATC 2 cut(s) 144, 282
Bst2UI CCWGG 1 cut(s) 362
Bst4CI ACNGT 3 cut(s) 41, 75, 481
Bst6I CTCTTC 1 cut(s) 564
BstBAI YACGTR 1 cut(s) 45
BstDEI CTNAG 1 cut(s) 437
BstF5I GGATG 2 cut(s) 21, 147
BstKTI GATC 2 cut(s) 147, 285
BstMAI GTCTC 2 cut(s) 30, 103
BstMBI GATC 2 cut(s) 144, 282
BstMWI GCNNNNNNNGC 1 cut(s) 215
BstNI CCWGG 1 cut(s) 362
BstNSI RCATGY 1 cut(s) 455
BstSCI CCNGG 1 cut(s) 360
BstSNI TACGTA 1 cut(s) 45
BstV1I GCAGC 3 cut(s) 196, 486, 566
BstX2I RGATCY 1 cut(s) 282
BstYI RGATCY 1 cut(s) 282
BsuRI GGCC 1 cut(s) 119
BtsCI GGATG 2 cut(s) 21, 147
BveI ACCTGC 1 cut(s) 152
Cfr13I GGNCC 1 cut(s) 118
Csp6I GTAC 3 cut(s) 42, 46, 468
CviAII CATG 2 cut(s) 389, 452
CviQI GTAC 3 cut(s) 42, 46, 468
DdeI CTNAG 1 cut(s) 437
DpnI GATC 2 cut(s) 146, 284
DpnII GATC 2 cut(s) 144, 282
DraIII CACNNNGTG 1 cut(s) 244
Eam1104I CTCTTC 1 cut(s) 564
EarI CTCTTC 1 cut(s) 564
EciI GGCGGA 1 cut(s) 40
Eco105I TACGTA 1 cut(s) 45
Eco31I GGTCTC 1 cut(s) 30
Eco57I CTGAAG 1 cut(s) 182
EcoRII CCWGG 1 cut(s) 360
FaeI CATG 2 cut(s) 392, 455
FaiI YATR 4 cut(s) 336, 390, 453, 485
FaqI GGGAC 1 cut(s) 357
FatI CATG 2 cut(s) 388, 451
FbaI TGATCA 1 cut(s) 144
Fnu4HI GCNGC 4 cut(s) 117, 210, 500, 555
FokI GGATG 2 cut(s) 8, 134
Fsp4HI GCNGC 4 cut(s) 117, 210, 500, 555
FspBI CTAG 3 cut(s) 11, 17, 95
GluI GCNGC 4 cut(s) 117, 210, 500, 555
GsaI CCCAGC 2 cut(s) 155, 515
GsuI CTGGAG 1 cut(s) 317
HaeIII GGCC 1 cut(s) 119
HapII CCGG 1 cut(s) 83
Hin1II CATG 2 cut(s) 392, 455
HpaII CCGG 1 cut(s) 83
HphI GGTGA 1 cut(s) 256
Hpy188I TCNGA 1 cut(s) 35
Hpy188III TCNNGA 1 cut(s) 397
Hpy99I CGWCG 2 cut(s) 61, 137
HpyAV CCTTC 3 cut(s) 35, 89, 409
HpyCH4III ACNGT 3 cut(s) 41, 75, 481
HpyCH4IV ACGT 1 cut(s) 44
HpyCH4V TGCA 1 cut(s) 455
HpyF10VI GCNNNNNNNGC 1 cut(s) 215
HpyF3I CTNAG 1 cut(s) 437
HpySE526I ACGT 1 cut(s) 44
Hsp92II CATG 2 cut(s) 392, 455
Ksp22I TGATCA 1 cut(s) 144
Kzo9I GATC 2 cut(s) 144, 282
LmnI GCTCC 1 cut(s) 193
Lsp1109I GCAGC 3 cut(s) 196, 486, 566
LweI GCATC 2 cut(s) 310, 357
MaeI CTAG 3 cut(s) 11, 17, 95
MaeII ACGT 1 cut(s) 44
MalI GATC 2 cut(s) 146, 284
MboI GATC 2 cut(s) 144, 282
MflI RGATCY 1 cut(s) 282
MluCI AATT 1 cut(s) 123
MnlI CCTC 6 cut(s) 64, 271, 296, 540, 555, 565
MseI TTAA 4 cut(s) 252, 327, 564, 577
MslI CAYNNNNRTG 1 cut(s) 398
MspI CCGG 1 cut(s) 83
MspR9I CCNGG 1 cut(s) 362
MvaI CCWGG 1 cut(s) 362
MwoI GCNNNNNNNGC 1 cut(s) 215
NdeII GATC 2 cut(s) 144, 282
NlaIII CATG 2 cut(s) 392, 455
NlaIV GGNNCC 2 cut(s) 77, 120
NmeAIII GCCGAG 1 cut(s) 92
NspI RCATGY 1 cut(s) 455
Pfl23II CGTACG 1 cut(s) 41
PkrI GCNGC 4 cut(s) 118, 211, 501, 556
Ppu21I YACGTR 1 cut(s) 45
Psp6I CCWGG 1 cut(s) 360
PspFI CCCAGC 2 cut(s) 151, 511
PspGI CCWGG 1 cut(s) 360
PspLI CGTACG 1 cut(s) 41
PspN4I GGNNCC 2 cut(s) 77, 120
PspPI GGNCC 1 cut(s) 118
PsuI RGATCY 1 cut(s) 282
RsaI GTAC 3 cut(s) 43, 47, 469
RsaNI GTAC 3 cut(s) 42, 46, 468
RseI CAYNNNNRTG 1 cut(s) 398
SaqAI TTAA 4 cut(s) 252, 327, 564, 577
SatI GCNGC 4 cut(s) 117, 210, 500, 555
Sau3AI GATC 2 cut(s) 144, 282
Sau96I GGNCC 1 cut(s) 118
ScrFI CCNGG 1 cut(s) 362
SetI ASST 8 cut(s) 47, 166, 198, 211, 382, 517, 547, 576
SfaNI GCATC 2 cut(s) 310, 357
SmiMI CAYNNNNRTG 1 cut(s) 398
SnaBI TACGTA 1 cut(s) 45
Sse9I AATT 1 cut(s) 123
SsiI CCGC 3 cut(s) 51, 116, 311
SspMI CTAG 3 cut(s) 11, 17, 95
StyD4I CCNGG 1 cut(s) 360
TaaI ACNGT 3 cut(s) 41, 75, 481
TaiI ACGT 1 cut(s) 47
TaqI TCGA 3 cut(s) 56, 408, 476
TasI AATT 1 cut(s) 123
TauI GCSGC 1 cut(s) 119
Tru1I TTAA 4 cut(s) 252, 327, 564, 577
Tru9I TTAA 4 cut(s) 252, 327, 564, 577
TseI GCWGC 3 cut(s) 209, 499, 554
TspDTI ATGAA 1 cut(s) 351
XceI RCATGY 1 cut(s) 455
XspI CTAG 3 cut(s) 11, 17, 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.