Rmu_sc0004787.1_g000004

Guanosine nucleotide diphosphate dissociation inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004787.1
OG0002570
Physical Location & Seq
Forward (+)
24326 .. 27483
3158 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 606 bp
atgaagtctatacagctgcaccataatttcttaccggagacgatggagccgcaccagtcgccaaaccctagtccggcaagcctccgtgaaacctccaaggagaatgcttctccgccttcagatctcgtctatggagccttggattcgaagccttcgccggcggccaagttgaataaactgttgccgccacggccaccaccattaaatcctctcaaactgaagcttgagatgcttcttgagaactccgtccatggagcctctgatcccggcctccagtttatgatggccaatggaactctaatgcgtgtcctcattcatacagctgttaccaagtatttgtccttcaaagctgtcgatggcggttttgtctataataaaggaaaggttcacagggttccagcaactgacatggaggcacttaaatctccactcatgggtctatttgaaaagcgccgtgcccgcaagttcttcatatatgttcaagattataatgaaagtgatccgaaaacacacgagggaatagactttacgagagtgacaactagagaattgattatgtgcttggatgttaccctttctgaaaatgaattctgtaatgcagtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001558 GO:0003674 GO:0005092 GO:0005093 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0007275 GO:0007399 GO:0008150 GO:0008361 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010720 GO:0010721 GO:0010769 GO:0010770 GO:0010771 GO:0010975 GO:0010976 GO:0010977 GO:0016043 GO:0017016 GO:0017137 GO:0019899 GO:0022008 GO:0022603 GO:0022604 GO:0023052 GO:0030054 GO:0030154 GO:0030234 GO:0030307 GO:0030424 GO:0030516 GO:0030695 GO:0031267 GO:0031344 GO:0031345 GO:0031346 GO:0032386 GO:0032387 GO:0032482 GO:0032501 GO:0032502 GO:0032535 GO:0032879 GO:0032880 GO:0032991 GO:0033157 GO:0035556 GO:0036477 GO:0040008 GO:0042221 GO:0042995 GO:0043005 GO:0043025 GO:0043209 GO:0044297 GO:0044424 GO:0044444 GO:0044464 GO:0045595 GO:0045596 GO:0045597 GO:0045664 GO:0045665 GO:0045666 GO:0045773 GO:0045927 GO:0048046 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048639 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050769 GO:0050770 GO:0050771 GO:0050772 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051020 GO:0051049 GO:0051051 GO:0051093 GO:0051094 GO:0051128 GO:0051129 GO:0051130 GO:0051223 GO:0051224 GO:0051239 GO:0051240 GO:0051241 GO:0051592 GO:0051716 GO:0051960 GO:0051961 GO:0051962 GO:0055044 GO:0060284 GO:0060341 GO:0060589 GO:0061387 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0071840 GO:0090066 GO:0090087 GO:0090313 GO:0090315 GO:0090317 GO:0097458 GO:0098772 GO:0120025 GO:0120035 GO:1903533 GO:1903827 GO:1903828 GO:1904950 GO:1905475 GO:1905476 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GDI

Protein Analysis

201

Amino Acids

22.49

Weight (kDa)

8.48

Isoelectric Point (pI)

40.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDI PF00996 92 - 197 1.8e-42 GDP dissociation inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 489
AciI CCGC 6 cut(s) 50, 113, 161, 185, 360, 460
AclWI GGATC 2 cut(s) 257, 494
AcoI YGGCCR 3 cut(s) 162, 191, 285
AcsI RAATTY 1 cut(s) 587
AcuI CTGAAG 2 cut(s) 102, 239
AfiI CCNNNNNNNGG 2 cut(s) 73, 434
AgsI TTSAA 4 cut(s) 172, 346, 446, 482
AluBI AGCT 4 cut(s) 16, 223, 323, 350
AluI AGCT 4 cut(s) 16, 223, 323, 350
Alw26I GTCTC 1 cut(s) 32
AlwI GGATC 2 cut(s) 257, 494
AlwNI CAGNNNCTG 1 cut(s) 404
AoxI GGCC 4 cut(s) 162, 191, 268, 285
ApeKI GCWGC 1 cut(s) 16
ApoI RAATTY 1 cut(s) 587
AspLEI GCGC 1 cut(s) 453
AsuC2I CCSGG 1 cut(s) 267
AsuII TTCGAA 1 cut(s) 146
BaeGI GKGCMC 1 cut(s) 460
BalI TGGCCA 1 cut(s) 287
BarI GAAGNNNNNNTAC 2 cut(s) 326, 358
BauI CACGAG 1 cut(s) 512
BbvI GCAGC 1 cut(s) 3
BccI CCATC 3 cut(s) 37, 277, 350
BceAI ACGGC 2 cut(s) 206, 438
BcnI CCSGG 1 cut(s) 267
BcoDI GTCTC 1 cut(s) 32
BfaI CTAG 2 cut(s) 69, 543
BfoI RGCGCY 1 cut(s) 454
BglI GCCNNNNNGGC 1 cut(s) 190
BglII AGATCT 1 cut(s) 121
BisI GCNGC 4 cut(s) 17, 50, 162, 185
BlsI GCNGC 4 cut(s) 18, 51, 163, 186
Bme1390I CCNGG 1 cut(s) 267
BmiI GGNNCC 4 cut(s) 48, 136, 256, 396
BmrFI CCNGG 1 cut(s) 267
BmsI GCATC 1 cut(s) 219
BpmI CTGGAG 1 cut(s) 257
Bpu14I TTCGAA 1 cut(s) 146
BpuEI CTTGAG 2 cut(s) 245, 257
BpuMI CCSGG 1 cut(s) 267
BsaJI CCNNGG 4 cut(s) 96, 138, 188, 250
BsaWI WCCGGW 1 cut(s) 34
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 434
Bse118I RCCGGY 1 cut(s) 157
Bse1I ACTGG 2 cut(s) 55, 274
BseDI CCNNGG 4 cut(s) 96, 138, 188, 250
BseGI GGATG 1 cut(s) 571
BseLI CCNNNNNNNGG 2 cut(s) 73, 434
BseNI ACTGG 2 cut(s) 55, 274
BseSI GKGCMC 1 cut(s) 460
BseXI GCAGC 1 cut(s) 3
BshFI GGCC 4 cut(s) 164, 193, 270, 287
BsiSI CCGG 4 cut(s) 35, 74, 158, 267
BslI CCNNNNNNNGG 2 cut(s) 73, 434
BsmAI GTCTC 1 cut(s) 32
BsmBI CGTCTC 1 cut(s) 32
BsmI GAATGC 1 cut(s) 109
BsnI GGCC 4 cut(s) 164, 193, 270, 287
Bsp119I TTCGAA 1 cut(s) 146
Bsp1286I GDGCHC 1 cut(s) 460
Bsp143I GATC 3 cut(s) 121, 262, 499
Bsp19I CCATGG 1 cut(s) 250
BspACI CCGC 6 cut(s) 50, 113, 161, 185, 360, 460
BspANI GGCC 4 cut(s) 164, 193, 270, 287
BspLI GGNNCC 4 cut(s) 48, 136, 256, 396
BspPI GGATC 2 cut(s) 257, 494
BspT104I TTCGAA 1 cut(s) 146
BsrFI RCCGGY 1 cut(s) 157
BsrI ACTGG 2 cut(s) 55, 274
BssAI RCCGGY 1 cut(s) 157
BssECI CCNNGG 4 cut(s) 96, 138, 188, 250
BssMI GATC 3 cut(s) 121, 262, 499
BssSI CACGAG 1 cut(s) 512
BssT1I CCWWGG 3 cut(s) 96, 138, 250
Bst2BI CACGAG 1 cut(s) 512
Bst4CI ACNGT 1 cut(s) 180
BstBI TTCGAA 1 cut(s) 146
BstC8I GCNNGC 3 cut(s) 79, 159, 460
BstDSI CCRYGG 2 cut(s) 188, 250
BstF5I GGATG 1 cut(s) 571
BstH2I RGCGCY 1 cut(s) 454
BstHHI GCGC 1 cut(s) 453
BstKTI GATC 3 cut(s) 124, 265, 502
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 3 cut(s) 121, 262, 499
BstMWI GCNNNNNNNGC 4 cut(s) 58, 190, 229, 459
BstSCI CCNGG 1 cut(s) 265
BstSLI GKGCMC 1 cut(s) 460
BstV1I GCAGC 1 cut(s) 3
BstX2I RGATCY 1 cut(s) 121
BstYI RGATCY 1 cut(s) 121
BsuRI GGCC 4 cut(s) 164, 193, 270, 287
BtgI CCRYGG 2 cut(s) 188, 250
BtsCI GGATG 1 cut(s) 571
Cac8I GCNNGC 3 cut(s) 79, 159, 460
CaiI CAGNNNCTG 1 cut(s) 404
CfoI GCGC 1 cut(s) 453
Cfr10I RCCGGY 1 cut(s) 157
CviAII CATG 3 cut(s) 251, 409, 433
DpnI GATC 3 cut(s) 123, 264, 501
DpnII GATC 3 cut(s) 121, 262, 499
EaeI YGGCCR 3 cut(s) 162, 191, 285
EciI GGCGGA 1 cut(s) 102
Eco130I CCWWGG 3 cut(s) 96, 138, 250
Eco57I CTGAAG 2 cut(s) 102, 239
EcoRI GAATTC 1 cut(s) 587
EcoT14I CCWWGG 3 cut(s) 96, 138, 250
ErhI CCWWGG 3 cut(s) 96, 138, 250
Esp3I CGTCTC 1 cut(s) 32
FaeI CATG 3 cut(s) 254, 412, 436
FatI CATG 3 cut(s) 250, 408, 432
FauI CCCGC 1 cut(s) 467
Fnu4HI GCNGC 4 cut(s) 17, 50, 162, 185
FokI GGATG 1 cut(s) 578
Fsp4HI GCNGC 4 cut(s) 17, 50, 162, 185
FspBI CTAG 2 cut(s) 69, 543
GlaI GCGC 1 cut(s) 452
GluI GCNGC 4 cut(s) 17, 50, 162, 185
GsuI CTGGAG 1 cut(s) 257
HaeII RGCGCY 1 cut(s) 454
HaeIII GGCC 4 cut(s) 164, 193, 270, 287
HapII CCGG 4 cut(s) 35, 74, 158, 267
HhaI GCGC 1 cut(s) 453
Hin1II CATG 3 cut(s) 254, 412, 436
Hin6I GCGC 1 cut(s) 451
HinP1I GCGC 1 cut(s) 451
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 1 cut(s) 143
HpaII CCGG 4 cut(s) 35, 74, 158, 267
Hpy166II GTNNAC 1 cut(s) 388
Hpy188I TCNGA 4 cut(s) 121, 262, 504, 580
Hpy188III TCNNGA 2 cut(s) 236, 482
Hpy8I GTNNAC 1 cut(s) 388
HpyAV CCTTC 3 cut(s) 126, 162, 352
HpyCH4III ACNGT 1 cut(s) 180
HpyCH4V TGCA 2 cut(s) 19, 599
HpyF10VI GCNNNNNNNGC 4 cut(s) 58, 190, 229, 459
Hsp92II CATG 3 cut(s) 254, 412, 436
HspAI GCGC 1 cut(s) 451
KroI GCCGGC 1 cut(s) 157
KroNI GCCGGC 1 cut(s) 159
Kzo9I GATC 3 cut(s) 121, 262, 499
LmnI GCTCC 3 cut(s) 46, 134, 254
LpnPI CCDG 8 cut(s) 48, 68, 87, 171, 280, 287, 376, 411
Lsp1109I GCAGC 1 cut(s) 3
LweI GCATC 1 cut(s) 219
MaeI CTAG 2 cut(s) 69, 543
MaeIII GTNAC 3 cut(s) 325, 535, 568
MalI GATC 3 cut(s) 123, 264, 501
MboI GATC 3 cut(s) 121, 262, 499
MboII GAAGA 1 cut(s) 460
MflI RGATCY 1 cut(s) 121
MhlI GDGCHC 1 cut(s) 460
MlsI TGGCCA 1 cut(s) 287
MluCI AATT 3 cut(s) 25, 548, 587
MluNI TGGCCA 1 cut(s) 287
MnlI CCTC 8 cut(s) 92, 103, 219, 268, 281, 320, 406, 508
Mox20I TGGCCA 1 cut(s) 287
MreI CGCCGGCG 1 cut(s) 157
MroNI GCCGGC 1 cut(s) 157
MscI TGGCCA 1 cut(s) 287
MseI TTAA 2 cut(s) 203, 420
Msp20I TGGCCA 1 cut(s) 287
MspA1I CMGCKG 2 cut(s) 16, 323
MspI CCGG 4 cut(s) 35, 74, 158, 267
MspR9I CCNGG 1 cut(s) 267
Mva1269I GAATGC 1 cut(s) 109
MwoI GCNNNNNNNGC 4 cut(s) 58, 190, 229, 459
NaeI GCCGGC 1 cut(s) 159
NciI CCSGG 1 cut(s) 267
NcoI CCATGG 1 cut(s) 250
NdeII GATC 3 cut(s) 121, 262, 499
NgoMIV GCCGGC 1 cut(s) 157
NlaIII CATG 3 cut(s) 254, 412, 436
NlaIV GGNNCC 4 cut(s) 48, 136, 256, 396
NmuCI GTSAC 1 cut(s) 535
NspV TTCGAA 1 cut(s) 146
PctI GAATGC 1 cut(s) 109
PdiI GCCGGC 1 cut(s) 159
PfeI GAWTC 1 cut(s) 143
PkrI GCNGC 4 cut(s) 18, 51, 163, 186
PsiI TTATAA 1 cut(s) 489
PspN4I GGNNCC 4 cut(s) 48, 136, 256, 396
PstNI CAGNNNCTG 1 cut(s) 404
PsuI RGATCY 1 cut(s) 121
PvuII CAGCTG 2 cut(s) 16, 323
SaqAI TTAA 2 cut(s) 203, 420
SatI GCNGC 4 cut(s) 17, 50, 162, 185
Sau3AI GATC 3 cut(s) 121, 262, 499
ScrFI CCNGG 1 cut(s) 267
SduI GDGCHC 1 cut(s) 460
SetI ASST 6 cut(s) 18, 95, 225, 325, 352, 387
SfaNI GCATC 1 cut(s) 219
SfuI TTCGAA 1 cut(s) 146
SgrAI CRCCGGYG 1 cut(s) 157
SmlI CTYRAG 2 cut(s) 224, 236
SmoI CTYRAG 2 cut(s) 224, 236
Sse9I AATT 3 cut(s) 25, 548, 587
SsiI CCGC 6 cut(s) 50, 113, 161, 185, 360, 460
SspMI CTAG 2 cut(s) 69, 543
StyD4I CCNGG 1 cut(s) 265
StyI CCWWGG 3 cut(s) 96, 138, 250
TaaI ACNGT 1 cut(s) 180
TaqI TCGA 2 cut(s) 146, 354
TasI AATT 3 cut(s) 25, 548, 587
TauI GCSGC 3 cut(s) 52, 164, 187
TfiI GAWTC 1 cut(s) 143
Tru1I TTAA 2 cut(s) 203, 420
Tru9I TTAA 2 cut(s) 203, 420
TseFI GTSAC 1 cut(s) 535
TseI GCWGC 1 cut(s) 16
Tsp45I GTSAC 1 cut(s) 535
TspDTI ATGAA 5 cut(s) 17, 305, 460, 507, 600
TspGWI ACGGA 2 cut(s) 74, 235
XapI RAATTY 1 cut(s) 587
XspI CTAG 2 cut(s) 69, 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.