Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006074.1

Orthogroup ID

OG0003129

Physical Location & Seq

Genomic Coordinates Forward (+)

56683 .. 58054

Gene Structure 1372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atggcggacgtcgccaccctatcatgttctcgttgcagcaaacccgccaatcttcagtgtcccaagtgtgtggaattgaagcttcctcgtgaagatgccgctttctgcgctcaggattgttttaaggcttcgtggagctcgcataaatcggtacatttaaaggccaagcagtccaatggggcgggaaatccagagaacgaaggctggcaatattgcttgaagaaaggacagggtcgaactccgaaacttccttattttgattggacagggacattgagaccatatcctatatctagtaaacgtgtggtacctgctcatattgatttacctgattgggcagctgatggaatcccaaaagaggagcccagtagtgacctgcagcgtgttgttgagatcaaaactccggatcaaattgagaggatgcgagaaacttgtcaagtaagttccaattgcttatttcttattttctttcgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016485 GO:0019538 GO:0031365 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24 zf-C6H2

Protein Analysis

158

Amino Acids

17.77

Weight (kDa)

8.57

Isoelectric Point (pI)

44.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C6H2	PF15801	10 - 53	1e-14	zf-MYND-like zinc finger, mRNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45240 AT2G45240
fragaria_vesca	FvH4_7g11350 FvH4_7g11370
malus_domestica	MD02G1206000.v1.1 MD07G1118400.v1.1 MD07G1118600.v1.1
prunus_persica	Prupe.2G141300_v2.0.a1
pyrus_communis	pycom02g16990 pycom07g10610
rosa_chinensis	RchiOBHm_Chr1g0349561 RchiOBHm_Chr1g0349651 RchiOBHm_Chr4g0403521 RchiOBHm_Chr7g0223151
rosa_laevigata	RLG00000028538 RLG00000028542
rosa_multiflora	Rmu_sc0001593.1_g000008 Rmu_sc0002495.1_g000024 Rmu_sc0002495.1_g000038 Rmu_sc0006074.1_g000011 Rmu_sc0012293.1_g000003
rosa_roxburghii	Rroxscaffold_4G00305410 Rroxscaffold_4G00305430
rosa_rugosa	Rorug01G0204500 Rorug05G0164500
rosa_samantha	Rh1AG221900 Rh1AG222400 Rh1BG188000 Rh1BG188300 Rh1CG206700 Rh1CG206800 Rh1CG207100 Rh1DG217400 Rh1DG217600
rosa_wichuraiana	Rw1G018860 Rw1G018910 Rw1G018950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	12
Acc36I	ACCTGC	2 cut(s)	319, 384
Acc65I	GGTACC	1 cut(s)	307
AccB1I	GGYRCC	1 cut(s)	307
AccIII	TCCGGA	1 cut(s)	403
AciI	CCGC	4 cut(s)	5, 45, 99, 182
AclWI	GGATC	1 cut(s)	414
AcuI	CTGAAG	1 cut(s)	38
AcyI	GRCGYC	1 cut(s)	9
AfaI	GTAC	2 cut(s)	153, 309
AfiI	CCNNNNNNNGG	1 cut(s)	358
AflIII	ACRYGT	1 cut(s)	301
AgsI	TTSAA	2 cut(s)	79, 220
AluBI	AGCT	3 cut(s)	82, 138, 341
AluI	AGCT	3 cut(s)	82, 138, 341
Alw21I	GWGCWC	1 cut(s)	140
Alw26I	GTCTC	1 cut(s)	271
AlwI	GGATC	1 cut(s)	414
Aor13HI	TCCGGA	1 cut(s)	403
AoxI	GGCC	1 cut(s)	162
ApeKI	GCWGC	3 cut(s)	36, 338, 379
Asp718I	GGTACC	1 cut(s)	307
AspLEI	GCGC	1 cut(s)	110
BanI	GGYRCC	1 cut(s)	307
BanII	GRGCYC	2 cut(s)	140, 366
BauI	CACGAG	1 cut(s)	87
Bbv12I	GWGCWC	1 cut(s)	140
BbvI	GCAGC	3 cut(s)	48, 350, 391
BccI	CCATC	1 cut(s)	338
BcoDI	GTCTC	1 cut(s)	271
BfaI	CTAG	1 cut(s)	294
BfmI	CTRYAG	1 cut(s)	377
BfuAI	ACCTGC	2 cut(s)	319, 384
BisI	GCNGC	4 cut(s)	37, 99, 339, 380
BlsI	GCNGC	4 cut(s)	38, 100, 340, 381
BmiI	GGNNCC	2 cut(s)	309, 363
BmrI	ACTGGG	1 cut(s)	360
BmsI	GCATC	2 cut(s)	85, 411
BmuI	ACTGGG	1 cut(s)	360
Bpu10I	CCTNAGC	1 cut(s)	111
BsaHI	GRCGYC	1 cut(s)	9
BsaI	GGTCTC	1 cut(s)	271
BsaWI	WCCGGW	1 cut(s)	403
Bsc4I	CCNNNNNNNGG	1 cut(s)	358
Bse1I	ACTGG	1 cut(s)	366
BseAI	TCCGGA	1 cut(s)	403
BseGI	GGATG	1 cut(s)	426
BseLI	CCNNNNNNNGG	1 cut(s)	358
BseMII	CTCAG	1 cut(s)	125
BseNI	ACTGG	1 cut(s)	366
BseRI	GAGGAG	1 cut(s)	374
BseXI	GCAGC	3 cut(s)	48, 350, 391
BshFI	GGCC	1 cut(s)	164
BshNI	GGYRCC	1 cut(s)	307
BsiHKAI	GWGCWC	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	404
BslFI	GGGAC	2 cut(s)	45, 283
BslI	CCNNNNNNNGG	1 cut(s)	358
BsmAI	GTCTC	1 cut(s)	271
BsmFI	GGGAC	2 cut(s)	45, 283
BsnI	GGCC	1 cut(s)	164
Bso31I	GGTCTC	1 cut(s)	271
Bsp1286I	GDGCHC	2 cut(s)	140, 366
Bsp13I	TCCGGA	1 cut(s)	403
Bsp143I	GATC	2 cut(s)	393, 406
BspACI	CCGC	4 cut(s)	5, 45, 99, 182
BspANI	GGCC	1 cut(s)	164
BspCNI	CTCAG	1 cut(s)	124
BspEI	TCCGGA	1 cut(s)	403
BspLI	GGNNCC	2 cut(s)	309, 363
BspMAI	CTGCAG	1 cut(s)	381
BspMI	ACCTGC	2 cut(s)	319, 384
BspPI	GGATC	1 cut(s)	414
BspT107I	GGYRCC	1 cut(s)	307
BspTNI	GGTCTC	1 cut(s)	271
BsrI	ACTGG	1 cut(s)	366
BssMI	GATC	2 cut(s)	393, 406
BssNI	GRCGYC	1 cut(s)	9
BssSI	CACGAG	1 cut(s)	87
Bst2BI	CACGAG	1 cut(s)	87
BstACI	GRCGYC	1 cut(s)	9
BstC8I	GCNNGC	2 cut(s)	140, 206
BstDEI	CTNAG	1 cut(s)	111
BstF5I	GGATG	1 cut(s)	426
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	2 cut(s)	396, 409
BstMAI	GTCTC	1 cut(s)	271
BstMBI	GATC	2 cut(s)	393, 406
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 107
BstSFI	CTRYAG	1 cut(s)	377
BstV1I	GCAGC	3 cut(s)	48, 350, 391
BstXI	CCANNNNNNTGG	1 cut(s)	70
BsuRI	GGCC	1 cut(s)	164
BtsCI	GGATG	1 cut(s)	426
BtsIMutI	CAGTG	1 cut(s)	62
BveI	ACCTGC	2 cut(s)	319, 384
Cac8I	GCNNGC	2 cut(s)	140, 206
CfoI	GCGC	1 cut(s)	110
Csp6I	GTAC	2 cut(s)	152, 308
CviAII	CATG	1 cut(s)	24
CviJI	RGCY	7 cut(s)	82, 128, 138, 164, 204, 341, 364
CviKI_1	RGCY	7 cut(s)	82, 128, 138, 164, 204, 341, 364
CviQI	GTAC	2 cut(s)	152, 308
DdeI	CTNAG	1 cut(s)	111
DpnI	GATC	2 cut(s)	395, 408
DpnII	GATC	2 cut(s)	393, 406
DraI	TTTAAA	1 cut(s)	159
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	138
Eco24I	GRGCYC	2 cut(s)	140, 366
Eco31I	GGTCTC	1 cut(s)	271
Eco53kI	GAGCTC	1 cut(s)	138
Eco57I	CTGAAG	1 cut(s)	38
EcoICRI	GAGCTC	1 cut(s)	138
EcoT38I	GRGCYC	2 cut(s)	140, 366
FaeI	CATG	1 cut(s)	27
FaiI	YATR	5 cut(s)	25, 144, 283, 290, 318
FaqI	GGGAC	2 cut(s)	45, 283
FatI	CATG	1 cut(s)	23
FauI	CCCGC	2 cut(s)	52, 175
Fnu4HI	GCNGC	4 cut(s)	37, 99, 339, 380
FokI	GGATG	1 cut(s)	433
FriOI	GRGCYC	2 cut(s)	140, 366
Fsp4HI	GCNGC	4 cut(s)	37, 99, 339, 380
FspBI	CTAG	1 cut(s)	294
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	4 cut(s)	37, 99, 339, 380
HaeIII	GGCC	1 cut(s)	164
HapII	CCGG	1 cut(s)	404
HhaI	GCGC	1 cut(s)	110
Hin1I	GRCGYC	1 cut(s)	9
Hin1II	CATG	1 cut(s)	27
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	1 cut(s)	348
HpaII	CCGG	1 cut(s)	404
Hpy166II	GTNNAC	1 cut(s)	299
Hpy188I	TCNGA	1 cut(s)	243
Hpy188III	TCNNGA	4 cut(s)	89, 113, 191, 404
Hpy8I	GTNNAC	1 cut(s)	299
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	1 cut(s)	194
HpyCH4IV	ACGT	2 cut(s)	9, 301
HpyCH4V	TGCA	2 cut(s)	36, 379
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 107
HpyF3I	CTNAG	1 cut(s)	111
HpySE526I	ACGT	2 cut(s)	9, 301
Hsp92I	GRCGYC	1 cut(s)	9
Hsp92II	CATG	1 cut(s)	27
HspAI	GCGC	1 cut(s)	108
Kpn2I	TCCGGA	1 cut(s)	403
KpnI	GGTACC	1 cut(s)	311
Kzo9I	GATC	2 cut(s)	393, 406
LmnI	GCTCC	2 cut(s)	135, 361
Lsp1109I	GCAGC	3 cut(s)	48, 350, 391
LweI	GCATC	2 cut(s)	85, 411
MaeI	CTAG	1 cut(s)	294
MaeII	ACGT	2 cut(s)	9, 301
MaeIII	GTNAC	1 cut(s)	371
MalI	GATC	2 cut(s)	395, 408
MboI	GATC	2 cut(s)	393, 406
MboII	GAAGA	3 cut(s)	44, 104, 232
MfeI	CAATTG	1 cut(s)	448
MhlI	GDGCHC	2 cut(s)	140, 366
MluCI	AATT	3 cut(s)	74, 411, 448
MnlI	CCTC	3 cut(s)	96, 352, 411
MroI	TCCGGA	1 cut(s)	403
MseI	TTAA	3 cut(s)	123, 158, 475
MspA1I	CMGCKG	1 cut(s)	341
MspI	CCGG	1 cut(s)	404
MunI	CAATTG	1 cut(s)	448
MwoI	GCNNNNNNNGC	2 cut(s)	11, 107
NdeII	GATC	2 cut(s)	393, 406
NlaIII	CATG	1 cut(s)	27
NlaIV	GGNNCC	2 cut(s)	309, 363
NmuCI	GTSAC	1 cut(s)	371
PfeI	GAWTC	1 cut(s)	348
PflFI	GACNNNGTC	1 cut(s)	231
PkrI	GCNGC	4 cut(s)	38, 100, 340, 381
Psp124BI	GAGCTC	1 cut(s)	140
PspN4I	GGNNCC	2 cut(s)	309, 363
PstI	CTGCAG	1 cut(s)	381
PsyI	GACNNNGTC	1 cut(s)	231
PvuII	CAGCTG	1 cut(s)	341
RsaI	GTAC	2 cut(s)	153, 309
RsaNI	GTAC	2 cut(s)	152, 308
SacI	GAGCTC	1 cut(s)	140
SaqAI	TTAA	3 cut(s)	123, 158, 475
SatI	GCNGC	4 cut(s)	37, 99, 339, 380
Sau3AI	GATC	2 cut(s)	393, 406
SduI	GDGCHC	2 cut(s)	140, 366
SetI	ASST	8 cut(s)	12, 84, 140, 304, 313, 331, 343, 378
SfaNI	GCATC	2 cut(s)	85, 411
SfcI	CTRYAG	1 cut(s)	377
Sse9I	AATT	3 cut(s)	74, 411, 448
SsiI	CCGC	4 cut(s)	5, 45, 99, 182
SspI	AATATT	1 cut(s)	212
SspMI	CTAG	1 cut(s)	294
SstI	GAGCTC	1 cut(s)	140
TaiI	ACGT	2 cut(s)	12, 304
TaqI	TCGA	1 cut(s)	235
TasI	AATT	3 cut(s)	74, 411, 448
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	1 cut(s)	348
Tru1I	TTAA	3 cut(s)	123, 158, 475
Tru9I	TTAA	3 cut(s)	123, 158, 475
TscAI	CASTG	1 cut(s)	62
TseFI	GTSAC	1 cut(s)	371
TseI	GCWGC	3 cut(s)	36, 338, 379
Tsp45I	GTSAC	1 cut(s)	371
TspRI	CASTG	1 cut(s)	62
Tth111I	GACNNNGTC	1 cut(s)	231
XspI	CTAG	1 cut(s)	294
ZraI	GACGTC	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.