Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006382.1

Orthogroup ID

OG0003062

Physical Location & Seq

Genomic Coordinates Forward (+)

52320 .. 54692

Gene Structure 2373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

atgattacatttgtttgttgcagttgggcatcagatgttgaactctctggcagtatacctaacttcataggaaattggtcaaagcttacttccttgaggtttcaaggaaactcctttgaaggtcctataccatctgcactttccaatctgacttctctgacagagctgtatataactgacttatctactaccaatgggagctcttctcttcggtttattaaggatatgaagtctctatctgtcttagtgctaagaaataacaacatttctgattcaattccttccaacattggagaataccaaagtttatctcagctggacttgagcttcaacaatctaactggacaaataccagactcactgtttaatttgagttctctttccatcctgtttcttggaaacaataagttgaatggtactctacctgaatctaaaagctcatctcttctcaatgtagatttatcatacaataatctagttgggagcattccttcttgggtcaacggaacgagtttacagctatttcaatcaccatttaatctggtctgtcgatttcaagtgtataatggccgagatcggatcaacgatctagaaacctctagaaaatttcagaacttgagacctgtctcgggtattcgcaacaggacccgatcctcacttccaatttcggccatctccaagggtcggaataccagtgttctaactgcatcgtcgttgcgaccaagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

242

Amino Acids

26.6

Weight (kDa)

9.51

Isoelectric Point (pI)

35.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	65 - 136	8e-06	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003062)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g07951
malus_domestica	MD12G1248200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0318681 RchiOBHm_Chr1g0319091 RchiOBHm_Chr2g0125271 RchiOBHm_Chr4g0426301 RchiOBHm_Chr7g0187311
rosa_laevigata	RLG00000006896 RLG00000028895
rosa_multiflora	Rmu_sc0001747.1_g000005 Rmu_sc0001877.1_g000012 Rmu_sc0001904.1_g000006 Rmu_sc0002983.1_g000016 Rmu_sc0006382.1_g000008 Rmu_sc0007285.1_g000017
rosa_roxburghii	Rroxscaffold_1G00011350 Rroxscaffold_1G00037350 Rroxscaffold_1G00045990 Rroxscaffold_1G00049060 Rroxscaffold_1G00070310 Rroxscaffold_3G00222330 Rroxscaffold_4G00307450 Rroxscaffold_5G00385990 Rroxscaffold_6G00407860 Rroxscaffold_6G00428470
rosa_rugosa	Rorug01G0107800 Rorug03G0135100 Rorug03G0135200
rosa_samantha	Rh2AG155600 Rh2AG341400 Rh2BG161900 Rh2BG322800 Rh3BG144800 Rh3BG291400 Rh3BG291500 Rh4CG112300 Rh5DG415000
rosa_wichuraiana	Rw6G014080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	55
AclWI	GGATC	2 cut(s)	587, 645
AcoI	YGGCCR	2 cut(s)	568, 669
AcsI	RAATTY	1 cut(s)	605
AfaI	GTAC	1 cut(s)	418
AfiI	CCNNNNNNNGG	2 cut(s)	629, 684
AgsI	TTSAA	8 cut(s)	41, 104, 119, 276, 331, 412, 527, 557
AluBI	AGCT	7 cut(s)	85, 166, 201, 316, 327, 438, 520
AluI	AGCT	7 cut(s)	85, 166, 201, 316, 327, 438, 520
Alw21I	GWGCWC	1 cut(s)	203
Alw26I	GTCTC	3 cut(s)	237, 613, 631
AlwI	GGATC	2 cut(s)	587, 645
Ama87I	CYCGRG	1 cut(s)	628
AoxI	GGCC	2 cut(s)	568, 669
ApoI	RAATTY	1 cut(s)	605
AspS9I	GGNCC	2 cut(s)	122, 645
AsuHPI	GGTGA	1 cut(s)	522
AvaI	CYCGRG	1 cut(s)	628
AvaII	GGWCC	2 cut(s)	122, 645
BanII	GRGCYC	1 cut(s)	203
BarI	GAAGNNNNNNTAC	2 cut(s)	111, 143
Bbv12I	GWGCWC	1 cut(s)	203
BccI	CCATC	3 cut(s)	139, 392, 680
BcoDI	GTCTC	3 cut(s)	237, 613, 631
BfaI	CTAG	3 cut(s)	476, 590, 600
Bme18I	GGWCC	2 cut(s)	122, 645
BmeT110I	CYCGRG	1 cut(s)	628
BmgT120I	GGNCC	2 cut(s)	122, 645
BmiI	GGNNCC	1 cut(s)	647
BmsI	GCATC	2 cut(s)	38, 716
BplI	GAGNNNNNCTC	2 cut(s)	190, 222
BpuEI	CTTGAG	3 cut(s)	115, 343, 637
BsaI	GGTCTC	1 cut(s)	613
BsaJI	CCNNGG	1 cut(s)	678
Bsc4I	CCNNNNNNNGG	2 cut(s)	629, 684
Bse1I	ACTGG	2 cut(s)	346, 693
BseDI	CCNNGG	1 cut(s)	678
BseGI	GGATG	1 cut(s)	384
BseLI	CCNNNNNNNGG	2 cut(s)	629, 684
BseMII	CTCAG	1 cut(s)	326
BseNI	ACTGG	2 cut(s)	346, 693
BsgI	GTGCAG	1 cut(s)	120
BshFI	GGCC	2 cut(s)	570, 671
BsiHKAI	GWGCWC	1 cut(s)	203
BsiHKCI	CYCGRG	1 cut(s)	628
BslI	CCNNNNNNNGG	2 cut(s)	629, 684
BsmAI	GTCTC	3 cut(s)	237, 613, 631
BsmI	GAATGC	1 cut(s)	486
BsnI	GGCC	2 cut(s)	570, 671
Bso31I	GGTCTC	1 cut(s)	613
BsoBI	CYCGRG	1 cut(s)	628
Bsp1286I	GDGCHC	1 cut(s)	203
Bsp143I	GATC	4 cut(s)	574, 579, 586, 650
BspANI	GGCC	2 cut(s)	570, 671
BspCNI	CTCAG	1 cut(s)	325
BspLI	GGNNCC	1 cut(s)	647
BspPI	GGATC	2 cut(s)	587, 645
BspQI	GCTCTTC	1 cut(s)	208
BspTNI	GGTCTC	1 cut(s)	613
BsrI	ACTGG	2 cut(s)	346, 693
BssECI	CCNNGG	1 cut(s)	678
BssMI	GATC	4 cut(s)	574, 579, 586, 650
BssNAI	GTATAC	1 cut(s)	56
BssT1I	CCWWGG	1 cut(s)	678
Bst1107I	GTATAC	1 cut(s)	56
Bst4CI	ACNGT	1 cut(s)	363
Bst6I	CTCTTC	3 cut(s)	208, 213, 450
BstDEI	CTNAG	3 cut(s)	244, 251, 312
BstF5I	GGATG	1 cut(s)	384
BstKTI	GATC	4 cut(s)	577, 582, 589, 653
BstMAI	GTCTC	3 cut(s)	237, 613, 631
BstMBI	GATC	4 cut(s)	574, 579, 586, 650
BstZ17I	GTATAC	1 cut(s)	56
BsuRI	GGCC	2 cut(s)	570, 671
BtsCI	GGATG	1 cut(s)	384
BtsIMutI	CAGTG	2 cut(s)	359, 700
Cfr13I	GGNCC	2 cut(s)	122, 645
Csp6I	GTAC	1 cut(s)	417
CviJI	RGCY	9 cut(s)	85, 166, 201, 316, 327, 438, 520, 570, 671
CviKI_1	RGCY	9 cut(s)	85, 166, 201, 316, 327, 438, 520, 570, 671
CviQI	GTAC	1 cut(s)	417
DdeI	CTNAG	3 cut(s)	244, 251, 312
DpnI	GATC	4 cut(s)	576, 581, 588, 652
DpnII	GATC	4 cut(s)	574, 579, 586, 650
EaeI	YGGCCR	2 cut(s)	568, 669
Eam1104I	CTCTTC	3 cut(s)	208, 213, 450
EarI	CTCTTC	3 cut(s)	208, 213, 450
Ecl136II	GAGCTC	1 cut(s)	201
Eco130I	CCWWGG	1 cut(s)	678
Eco24I	GRGCYC	1 cut(s)	203
Eco31I	GGTCTC	1 cut(s)	613
Eco47I	GGWCC	2 cut(s)	122, 645
Eco53kI	GAGCTC	1 cut(s)	201
Eco88I	CYCGRG	1 cut(s)	628
EcoICRI	GAGCTC	1 cut(s)	201
EcoO109I	RGGNCCY	2 cut(s)	122, 645
EcoT14I	CCWWGG	1 cut(s)	678
EcoT38I	GRGCYC	1 cut(s)	203
ErhI	CCWWGG	1 cut(s)	678
FaiI	YATR	8 cut(s)	56, 68, 128, 171, 173, 227, 466, 564
FblI	GTMKAC	1 cut(s)	55
FokI	GGATG	1 cut(s)	371
FriOI	GRGCYC	1 cut(s)	203
FspBI	CTAG	3 cut(s)	476, 590, 600
HaeIII	GGCC	2 cut(s)	570, 671
HincII	GTYRAC	1 cut(s)	502
HindII	GTYRAC	1 cut(s)	502
HindIII	AAGCTT	1 cut(s)	83
HinfI	GANTC	3 cut(s)	272, 356, 428
HphI	GGTGA	1 cut(s)	522
Hpy166II	GTNNAC	3 cut(s)	56, 502, 515
Hpy188I	TCNGA	7 cut(s)	34, 150, 159, 271, 579, 612, 687
Hpy188III	TCNNGA	2 cut(s)	590, 600
Hpy8I	GTNNAC	3 cut(s)	56, 502, 515
Hpy99I	CGWCG	1 cut(s)	715
HpyAV	CCTTC	3 cut(s)	113, 291, 501
HpyCH4III	ACNGT	1 cut(s)	363
HpyCH4V	TGCA	3 cut(s)	21, 137, 707
HpyF3I	CTNAG	3 cut(s)	244, 251, 312
Kzo9I	GATC	4 cut(s)	574, 579, 586, 650
LguI	GCTCTTC	1 cut(s)	208
LmnI	GCTCC	2 cut(s)	198, 483
LweI	GCATC	2 cut(s)	38, 716
MaeI	CTAG	3 cut(s)	476, 590, 600
MalI	GATC	4 cut(s)	576, 581, 588, 652
MboI	GATC	4 cut(s)	574, 579, 586, 650
MboII	GAAGA	3 cut(s)	195, 200, 437
MhlI	GDGCHC	1 cut(s)	203
MluCI	AATT	5 cut(s)	73, 276, 367, 605, 663
MlyI	GAGTC	1 cut(s)	350
MmeI	TCCRAC	2 cut(s)	309, 665
MnlI	CCTC	3 cut(s)	90, 607, 664
MseI	TTAA	3 cut(s)	219, 366, 537
MspA1I	CMGCKG	1 cut(s)	316
Mva1269I	GAATGC	1 cut(s)	486
NdeII	GATC	4 cut(s)	574, 579, 586, 650
NlaIV	GGNNCC	1 cut(s)	647
NmeAIII	GCCGAG	1 cut(s)	596
PciSI	GCTCTTC	1 cut(s)	208
PctI	GAATGC	1 cut(s)	486
PfeI	GAWTC	2 cut(s)	272, 428
PleI	GAGTC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	350
PpuMI	RGGWCCY	2 cut(s)	122, 645
Psp124BI	GAGCTC	1 cut(s)	203
Psp5II	RGGWCCY	2 cut(s)	122, 645
PspN4I	GGNNCC	1 cut(s)	647
PspPI	GGNCC	2 cut(s)	122, 645
PspPPI	RGGWCCY	2 cut(s)	122, 645
PvuII	CAGCTG	1 cut(s)	316
RsaI	GTAC	1 cut(s)	418
RsaNI	GTAC	1 cut(s)	417
SacI	GAGCTC	1 cut(s)	203
SapI	GCTCTTC	1 cut(s)	208
SaqAI	TTAA	3 cut(s)	219, 366, 537
Sau3AI	GATC	4 cut(s)	574, 579, 586, 650
Sau96I	GGNCC	2 cut(s)	122, 645
SchI	GAGTC	1 cut(s)	350
SduI	GDGCHC	1 cut(s)	203
SfaNI	GCATC	2 cut(s)	38, 716
SinI	GGWCC	2 cut(s)	122, 645
SmlI	CTYRAG	3 cut(s)	94, 322, 616
SmoI	CTYRAG	3 cut(s)	94, 322, 616
Sse9I	AATT	5 cut(s)	73, 276, 367, 605, 663
SspMI	CTAG	3 cut(s)	476, 590, 600
SstI	GAGCTC	1 cut(s)	203
StyI	CCWWGG	1 cut(s)	678
TaaI	ACNGT	1 cut(s)	363
TaqI	TCGA	1 cut(s)	550
TasI	AATT	5 cut(s)	73, 276, 367, 605, 663
TfiI	GAWTC	2 cut(s)	272, 428
Tru1I	TTAA	3 cut(s)	219, 366, 537
Tru9I	TTAA	3 cut(s)	219, 366, 537
TscAI	CASTG	2 cut(s)	366, 700
TspDTI	ATGAA	2 cut(s)	55, 242
TspGWI	ACGGA	1 cut(s)	519
TspRI	CASTG	2 cut(s)	366, 700
VpaK11BI	GGWCC	2 cut(s)	122, 645
XapI	RAATTY	1 cut(s)	605
XbaI	TCTAGA	2 cut(s)	589, 599
XmiI	GTMKAC	1 cut(s)	55
XspI	CTAG	3 cut(s)	476, 590, 600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.