Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007357.1

Orthogroup ID

OG0001731

Physical Location & Seq

Genomic Coordinates Forward (+)

8569 .. 12079

Gene Structure 3511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1395 bp

atgagatggtataataagccaattgattcgcattctctgattgactgtgcctcttctactccgacgattttccggcgaaagatgaacgaagaaaaggccggcgagcttctgaatcagttcgaacagattttggagtccgatcctgcaattgatgagattggatttgttcatccatccctgtttgtcaacttgaatgaagaggcatcctcatcatctgatggtattagtaatgtggtgtgctcagcagatgggagtgcagtgttttggaatagggatcataagttgggaatttcgacggatgttcttattccattatataaggaagctaagcgcgcgctgatggcagcaaatcgacaatataagggagtttgtagcacatctgatataactggggttgagagttctgtatgtgactcattatcgttgggtaacggtgttgaaagtgaagtcatgaagcatagcagggctgttttgttagtgagttctgattttggcactgcttggaattccaggaagatggtgttgttaaagaagcaagagctctcaatattattggatgaacttctattctcagctcttgttctttcatatgcacctaaatctgagcatgcttggagccacaggcgatgggtcatcaagttaattgctggaaagtgttcaactctggcagagattgtcaccaaagagtctgagctggtggagaaaatagctgagaggtcaaaaatgaattaccgcgcatggtatcatcgttgctggttggtgacctacatgacaacagagctgtctctacatgaattaaagagatctaaaaactgggcgggcttgcatgttgctgaccatagttgcttccattatcgcagacagctaatgcttaggattttagaggacagatgctgtaaacaagaaaatgaatcttctagttgtagtgttaaaataaatcaattatggaaggaggagcttgattggaatgaaatgttgataaagcgctacataggaagagaggctctatggcttcatcggcgcttcctatccttattttggataaaacattttttaactggtgagaccagtctgcctggggattggaagcacaaaaccagcatgaataatgactttgctatctttgtggataatgagttacatctcctgcagtcctgctccatcattccagatgacagttttgatgattaccaagcacaggctacatattctgctacttacatgttatggttgattaagcaaatccctgattctggtggcgttgaatttcttgagaagctaagaaccaaacacctgaatgccctgctgaacaaggcctgccctgaaaggtcctcaacttgggattctataatggcctatgtcgaaacatccgaccattatgtgaaagagagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0018342 GO:0019538 GO:0032991 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:0097354 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPTA

Protein Analysis

464

Amino Acids

53.34

Weight (kDa)

6.29

Isoelectric Point (pI)

53.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPTA	PF01239	185 - 213	1.5e-06	Protein prenyltransferase alpha subunit repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10095 AT1G10095 AT1G10095 AT1G10095
fragaria_vesca	FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921
malus_domestica	MD04G1230400.v1.1 MD12G1248000.v1.1 MD12G1248100.v1.1 MD12G1248600.v1.1 MD12G1248900.v1.1
prunus_persica	Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1
pyrus_communis	pycom04g20430 pycom12g22820 pycom12g22870
rosa_chinensis	RchiOBHm_Chr3g0449661
rosa_laevigata	RLG00000021254 RLG00000025810
rosa_multiflora	Rmu_co8329731.1_g000001 Rmu_sc0007357.1_g000001 Rmu_sc0009629.1_g000011 Rmu_sc0010999.1_g000002
rosa_roxburghii	Rroxscaffold_6G00427560
rosa_rugosa	Rorug02G0622600
rosa_samantha	Rh2BG103900 Rh2CG106400 Rh2DG102200 Rh3AG020700 Rh3BG021400 Rh3CG019900 Rh3DG021200 Rh5CG118600
rosa_wichuraiana	Rw3G001710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	333, 335, 735
AciI	CCGC	2 cut(s)	733, 818
AclWI	GGATC	2 cut(s)	134, 282
AcsI	RAATTY	3 cut(s)	288, 505, 1265
AfeI	AGCGCT	1 cut(s)	986
AfiI	CCNNNNNNNGG	4 cut(s)	1038, 1198, 1253, 1338
AflIII	ACRYGT	1 cut(s)	1221
AgsI	TTSAA	4 cut(s)	193, 440, 660, 1265
AjnI	CCWGG	2 cut(s)	509, 1075
Alw21I	GWGCWC	2 cut(s)	242, 543
Alw26I	GTCTC	2 cut(s)	789, 1058
AlwI	GGATC	2 cut(s)	134, 282
AlwNI	CAGNNNCTG	1 cut(s)	894
Aor51HI	AGCGCT	1 cut(s)	986
AoxI	GGCC	3 cut(s)	96, 1314, 1353
ApeKI	GCWGC	1 cut(s)	344
ApoI	RAATTY	3 cut(s)	288, 505, 1265
Asp700I	GAANNNNTTC	2 cut(s)	116, 655
AspLEI	GCGC	6 cut(s)	333, 335, 337, 737, 987, 1023
AspS9I	GGNCC	1 cut(s)	1329
AsuHPI	GGTGA	3 cut(s)	670, 772, 1073
AsuII	TTCGAA	1 cut(s)	120
AvaII	GGWCC	1 cut(s)	1329
BanII	GRGCYC	1 cut(s)	543
Bbv12I	GWGCWC	2 cut(s)	242, 543
BbvI	GCAGC	1 cut(s)	356
BccI	CCATC	7 cut(s)	181, 212, 242, 334, 511, 621, 1169
BciT130I	CCWGG	2 cut(s)	511, 1077
BcoDI	GTCTC	2 cut(s)	789, 1058
BfaI	CTAG	1 cut(s)	918
BfmI	CTRYAG	1 cut(s)	1148
BfoI	RGCGCY	2 cut(s)	988, 1024
BglII	AGATCT	1 cut(s)	803
BisI	GCNGC	1 cut(s)	345
BlpI	GCTNAGC	2 cut(s)	241, 327
BlsI	GCNGC	1 cut(s)	346
Bme1390I	CCNGG	2 cut(s)	511, 1077
Bme18I	GGWCC	1 cut(s)	1329
BmgT120I	GGNCC	1 cut(s)	1329
BmiI	GGNNCC	1 cut(s)	617
BmrFI	CCNGG	2 cut(s)	511, 1077
BmrI	ACTGGG	2 cut(s)	399, 823
BmsI	GCATC	2 cut(s)	212, 881
BmuI	ACTGGG	2 cut(s)	399, 823
BplI	GAGNNNNNCTC	2 cut(s)	191, 223
Bpu10I	CCTNAGC	1 cut(s)	872
Bpu1102I	GCTNAGC	2 cut(s)	241, 327
Bpu14I	TTCGAA	1 cut(s)	120
BpuEI	CTTGAG	1 cut(s)	1292
BsaI	GGTCTC	1 cut(s)	1058
BsaJI	CCNNGG	1 cut(s)	1076
Bsc4I	CCNNNNNNNGG	4 cut(s)	1038, 1198, 1253, 1338
Bse118I	RCCGGY	1 cut(s)	98
Bse1I	ACTGG	4 cut(s)	394, 818, 1063, 1068
BseBI	CCWGG	2 cut(s)	511, 1077
BseDI	CCNNGG	1 cut(s)	1076
BseGI	GGATG	6 cut(s)	169, 173, 203, 304, 562, 1367
BseLI	CCNNNNNNNGG	4 cut(s)	1038, 1198, 1253, 1338
BseMII	CTCAG	5 cut(s)	255, 585, 594, 681, 702
BseNI	ACTGG	4 cut(s)	394, 818, 1063, 1068
BsePI	GCGCGC	2 cut(s)	331, 333
BseRI	GAGGAG	1 cut(s)	968
BseXI	GCAGC	1 cut(s)	356
BsgI	GTGCAG	1 cut(s)	276
Bsh1236I	CGCG	3 cut(s)	333, 335, 735
BshFI	GGCC	3 cut(s)	98, 1316, 1355
BsiHKAI	GWGCWC	2 cut(s)	242, 543
BsiSI	CCGG	2 cut(s)	73, 99
BslI	CCNNNNNNNGG	4 cut(s)	1038, 1198, 1253, 1338
BsmAI	GTCTC	2 cut(s)	789, 1058
BsmI	GAATGC	2 cut(s)	31, 1303
BsnI	GGCC	3 cut(s)	98, 1316, 1355
Bso31I	GGTCTC	1 cut(s)	1058
Bsp119I	TTCGAA	1 cut(s)	120
Bsp1286I	GDGCHC	2 cut(s)	242, 543
Bsp143I	GATC	3 cut(s)	139, 274, 803
Bsp1720I	GCTNAGC	2 cut(s)	241, 327
BspACI	CCGC	2 cut(s)	733, 818
BspANI	GGCC	3 cut(s)	98, 1316, 1355
BspCNI	CTCAG	5 cut(s)	254, 584, 595, 682, 703
BspFNI	CGCG	3 cut(s)	333, 335, 735
BspHI	TCATGA	1 cut(s)	450
BspLI	GGNNCC	1 cut(s)	617
BspMAI	CTGCAG	1 cut(s)	1152
BspPI	GGATC	2 cut(s)	134, 282
BspT104I	TTCGAA	1 cut(s)	120
BspTNI	GGTCTC	1 cut(s)	1058
BsrFI	RCCGGY	1 cut(s)	98
BsrI	ACTGG	4 cut(s)	394, 818, 1063, 1068
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	1 cut(s)	1076
BssHII	GCGCGC	2 cut(s)	331, 333
BssMI	GATC	3 cut(s)	139, 274, 803
Bst2UI	CCWGG	2 cut(s)	511, 1077
Bst4CI	ACNGT	3 cut(s)	47, 434, 1178
Bst6I	CTCTTC	3 cut(s)	58, 192, 991
BstBI	TTCGAA	1 cut(s)	120
BstC8I	GCNNGC	8 cut(s)	100, 104, 333, 335, 609, 820, 824, 1318
BstDEI	CTNAG	8 cut(s)	241, 327, 571, 603, 690, 711, 872, 1280
BstEII	GGTNACC	1 cut(s)	760
BstF5I	GGATG	6 cut(s)	169, 173, 203, 304, 562, 1367
BstFNI	CGCG	3 cut(s)	333, 335, 735
BstH2I	RGCGCY	2 cut(s)	988, 1024
BstHHI	GCGC	6 cut(s)	333, 335, 337, 737, 987, 1023
BstKTI	GATC	3 cut(s)	142, 277, 806
BstMAI	GTCTC	2 cut(s)	789, 1058
BstMBI	GATC	3 cut(s)	139, 274, 803
BstMWI	GCNNNNNNNGC	3 cut(s)	332, 341, 1018
BstNI	CCWGG	2 cut(s)	511, 1077
BstNSI	RCATGY	3 cut(s)	611, 830, 1225
BstPI	GGTNACC	1 cut(s)	760
BstSCI	CCNGG	2 cut(s)	509, 1075
BstSFI	CTRYAG	1 cut(s)	1148
BstUI	CGCG	3 cut(s)	333, 335, 735
BstV1I	GCAGC	1 cut(s)	356
BstX2I	RGATCY	1 cut(s)	803
BstXI	CCANNNNNNTGG	1 cut(s)	517
BstYI	RGATCY	1 cut(s)	803
BsuRI	GGCC	3 cut(s)	98, 1316, 1355
BtgZI	GCGATG	1 cut(s)	640
BtsCI	GGATG	6 cut(s)	169, 173, 203, 304, 562, 1367
BtsI	GCAGTG	2 cut(s)	264, 495
BtsIMutI	CAGTG	2 cut(s)	264, 495
Cac8I	GCNNGC	8 cut(s)	100, 104, 333, 335, 609, 820, 824, 1318
CaiI	CAGNNNCTG	1 cut(s)	894
CciI	TCATGA	1 cut(s)	450
CfoI	GCGC	6 cut(s)	333, 335, 337, 737, 987, 1023
Cfr10I	RCCGGY	1 cut(s)	98
Cfr13I	GGNCC	1 cut(s)	1329
CviAII	CATG	8 cut(s)	451, 608, 738, 769, 791, 827, 1102, 1222
DdeI	CTNAG	8 cut(s)	241, 327, 571, 603, 690, 711, 872, 1280
DpnI	GATC	3 cut(s)	141, 276, 805
DpnII	GATC	3 cut(s)	139, 274, 803
Eam1104I	CTCTTC	3 cut(s)	58, 192, 991
EarI	CTCTTC	3 cut(s)	58, 192, 991
Ecl136II	GAGCTC	1 cut(s)	541
Eco147I	AGGCCT	1 cut(s)	1316
Eco24I	GRGCYC	1 cut(s)	543
Eco31I	GGTCTC	1 cut(s)	1058
Eco47I	GGWCC	1 cut(s)	1329
Eco47III	AGCGCT	1 cut(s)	986
Eco53kI	GAGCTC	1 cut(s)	541
Eco91I	GGTNACC	1 cut(s)	760
EcoICRI	GAGCTC	1 cut(s)	541
EcoO109I	RGGNCCY	1 cut(s)	1329
EcoO65I	GGTNACC	1 cut(s)	760
EcoRI	GAATTC	1 cut(s)	505
EcoRII	CCWGG	2 cut(s)	509, 1075
EcoT38I	GRGCYC	1 cut(s)	543
FaeI	CATG	8 cut(s)	454, 611, 741, 772, 794, 830, 1105, 1225
FatI	CATG	8 cut(s)	450, 607, 737, 768, 790, 826, 1101, 1221
FauI	CCCGC	1 cut(s)	811
FauNDI	CATATG	1 cut(s)	589
Fnu4HI	GCNGC	1 cut(s)	345
FokI	GGATG	6 cut(s)	156, 160, 190, 311, 569, 1354
FriOI	GRGCYC	1 cut(s)	543
Fsp4HI	GCNGC	1 cut(s)	345
FspBI	CTAG	1 cut(s)	918
GlaI	GCGC	6 cut(s)	332, 334, 336, 736, 986, 1022
GluI	GCNGC	1 cut(s)	345
HaeII	RGCGCY	2 cut(s)	988, 1024
HaeIII	GGCC	3 cut(s)	98, 1316, 1355
HapII	CCGG	2 cut(s)	73, 99
HhaI	GCGC	6 cut(s)	333, 335, 337, 737, 987, 1023
Hin1II	CATG	8 cut(s)	454, 611, 741, 772, 794, 830, 1105, 1225
Hin6I	GCGC	6 cut(s)	331, 333, 335, 735, 985, 1021
HinP1I	GCGC	6 cut(s)	331, 333, 335, 735, 985, 1021
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	8 cut(s)	26, 112, 134, 413, 686, 911, 1250, 1343
HpaII	CCGG	2 cut(s)	73, 99
HphI	GGTGA	3 cut(s)	670, 772, 1073
Hpy166II	GTNNAC	2 cut(s)	187, 899
Hpy188III	TCNNGA	3 cut(s)	451, 1169, 1271
Hpy8I	GTNNAC	2 cut(s)	187, 899
Hpy99I	CGWCG	2 cut(s)	67, 298
HpyAV	CCTTC	1 cut(s)	943
HpyCH4III	ACNGT	3 cut(s)	47, 434, 1178
HpyCH4V	TGCA	5 cut(s)	146, 257, 593, 826, 1150
HpyF10VI	GCNNNNNNNGC	3 cut(s)	332, 341, 1018
HpyF3I	CTNAG	8 cut(s)	241, 327, 571, 603, 690, 711, 872, 1280
Hsp92II	CATG	8 cut(s)	454, 611, 741, 772, 794, 830, 1105, 1225
HspAI	GCGC	6 cut(s)	331, 333, 335, 735, 985, 1021
KroI	GCCGGC	1 cut(s)	98
KroNI	GCCGGC	1 cut(s)	100
Kzo9I	GATC	3 cut(s)	139, 274, 803
LmnI	GCTCC	3 cut(s)	615, 955, 1163
Lsp1109I	GCAGC	1 cut(s)	356
LweI	GCATC	2 cut(s)	212, 881
MaeI	CTAG	1 cut(s)	918
MaeIII	GTNAC	5 cut(s)	410, 428, 676, 760, 1137
MalI	GATC	3 cut(s)	141, 276, 805
MboI	GATC	3 cut(s)	139, 274, 803
MboII	GAAGA	6 cut(s)	45, 101, 209, 526, 906, 1008
MfeI	CAATTG	2 cut(s)	21, 147
MflI	RGATCY	1 cut(s)	803
MhlI	GDGCHC	2 cut(s)	242, 543
MluCI	AATT	9 cut(s)	21, 147, 288, 505, 642, 727, 794, 941, 1265
MlyI	GAGTC	3 cut(s)	143, 407, 695
MmeI	TCCRAC	2 cut(s)	86, 1395
MnlI	CCTC	8 cut(s)	61, 193, 217, 708, 877, 946, 994, 1342
MroNI	GCCGGC	1 cut(s)	98
MroXI	GAANNNNTTC	2 cut(s)	116, 655
MseI	TTAA	6 cut(s)	527, 641, 797, 930, 1055, 1236
MslI	CAYNNNNRTG	1 cut(s)	1296
MspI	CCGG	2 cut(s)	73, 99
MspR9I	CCNGG	2 cut(s)	511, 1077
MunI	CAATTG	2 cut(s)	21, 147
Mva1269I	GAATGC	2 cut(s)	31, 1303
MvaI	CCWGG	2 cut(s)	511, 1077
MvnI	CGCG	3 cut(s)	333, 335, 735
MwoI	GCNNNNNNNGC	3 cut(s)	332, 341, 1018
NaeI	GCCGGC	1 cut(s)	100
NdeI	CATATG	1 cut(s)	589
NdeII	GATC	3 cut(s)	139, 274, 803
NgoMIV	GCCGGC	1 cut(s)	98
NlaIII	CATG	8 cut(s)	454, 611, 741, 772, 794, 830, 1105, 1225
NlaIV	GGNNCC	1 cut(s)	617
NmuCI	GTSAC	3 cut(s)	410, 676, 760
NspI	RCATGY	3 cut(s)	611, 830, 1225
NspV	TTCGAA	1 cut(s)	120
PaeI	GCATGC	1 cut(s)	611
PagI	TCATGA	1 cut(s)	450
PauI	GCGCGC	2 cut(s)	331, 333
PceI	AGGCCT	1 cut(s)	1316
PciI	ACATGT	1 cut(s)	1221
PcsI	WCGNNNNNNNCGW	1 cut(s)	1368
PctI	GAATGC	2 cut(s)	31, 1303
PdiI	GCCGGC	1 cut(s)	100
PdmI	GAANNNNTTC	2 cut(s)	116, 655
PfeI	GAWTC	5 cut(s)	26, 112, 911, 1250, 1343
PfoI	TCCNGGA	1 cut(s)	509
PkrI	GCNGC	1 cut(s)	346
PleI	GAGTC	3 cut(s)	142, 407, 694
PpsI	GAGTC	3 cut(s)	142, 407, 694
PpuMI	RGGWCCY	1 cut(s)	1329
PscI	ACATGT	1 cut(s)	1221
Psp124BI	GAGCTC	1 cut(s)	543
Psp5II	RGGWCCY	1 cut(s)	1329
Psp6I	CCWGG	2 cut(s)	509, 1075
PspEI	GGTNACC	1 cut(s)	760
PspGI	CCWGG	2 cut(s)	509, 1075
PspN4I	GGNNCC	1 cut(s)	617
PspPI	GGNCC	1 cut(s)	1329
PspPPI	RGGWCCY	1 cut(s)	1329
PstI	CTGCAG	1 cut(s)	1152
PstNI	CAGNNNCTG	1 cut(s)	894
PsuI	RGATCY	1 cut(s)	803
PteI	GCGCGC	2 cut(s)	331, 333
RseI	CAYNNNNRTG	1 cut(s)	1296
SacI	GAGCTC	1 cut(s)	543
SaqAI	TTAA	6 cut(s)	527, 641, 797, 930, 1055, 1236
SatI	GCNGC	1 cut(s)	345
Sau3AI	GATC	3 cut(s)	139, 274, 803
Sau96I	GGNCC	1 cut(s)	1329
SchI	GAGTC	3 cut(s)	143, 407, 695
ScrFI	CCNGG	2 cut(s)	511, 1077
SduI	GDGCHC	2 cut(s)	242, 543
SfaNI	GCATC	2 cut(s)	212, 881
SfcI	CTRYAG	1 cut(s)	1148
SfuI	TTCGAA	1 cut(s)	120
SinI	GGWCC	1 cut(s)	1329
SmiMI	CAYNNNNRTG	1 cut(s)	1296
SmlI	CTYRAG	1 cut(s)	1271
SmoI	CTYRAG	1 cut(s)	1271
SphI	GCATGC	1 cut(s)	611
Sse9I	AATT	9 cut(s)	21, 147, 288, 505, 642, 727, 794, 941, 1265
SseBI	AGGCCT	1 cut(s)	1316
SsiI	CCGC	2 cut(s)	733, 818
SspI	AATATT	1 cut(s)	549
SspMI	CTAG	1 cut(s)	918
SstI	GAGCTC	1 cut(s)	543
StuI	AGGCCT	1 cut(s)	1316
StyD4I	CCNGG	2 cut(s)	509, 1075
TaaI	ACNGT	3 cut(s)	47, 434, 1178
TaqI	TCGA	4 cut(s)	120, 293, 352, 1362
TasI	AATT	9 cut(s)	21, 147, 288, 505, 642, 727, 794, 941, 1265
TfiI	GAWTC	5 cut(s)	26, 112, 911, 1250, 1343
Tru1I	TTAA	6 cut(s)	527, 641, 797, 930, 1055, 1236
Tru9I	TTAA	6 cut(s)	527, 641, 797, 930, 1055, 1236
TscAI	CASTG	2 cut(s)	264, 502
TseFI	GTSAC	3 cut(s)	410, 676, 760
TseI	GCWGC	1 cut(s)	344
Tsp45I	GTSAC	3 cut(s)	410, 676, 760
TspGWI	ACGGA	1 cut(s)	311
TspRI	CASTG	2 cut(s)	264, 502
VpaK11BI	GGWCC	1 cut(s)	1329
XapI	RAATTY	3 cut(s)	288, 505, 1265
XceI	RCATGY	3 cut(s)	611, 830, 1225
XmnI	GAANNNNTTC	2 cut(s)	116, 655
XspI	CTAG	1 cut(s)	918

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.