Ribosomal protein-like protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 230 |
| AccB1I | GGYRCC | 1 cut(s) | 380 |
| AccBSI | CCGCTC | 1 cut(s) | 61 |
| AccI | GTMKAC | 2 cut(s) | 481, 842 |
| AccII | CGCG | 1 cut(s) | 709 |
| AciI | CCGC | 4 cut(s) | 61, 86, 253, 531 |
| AclWI | GGATC | 2 cut(s) | 1053, 1266 |
| AcoI | YGGCCR | 1 cut(s) | 148 |
| AcsI | RAATTY | 3 cut(s) | 473, 1118, 1265 |
| AcyI | GRCGYC | 1 cut(s) | 695 |
| AfaI | GTAC | 3 cut(s) | 230, 257, 401 |
| AfeI | AGCGCT | 1 cut(s) | 456 |
| AflIII | ACRYGT | 2 cut(s) | 271, 707 |
| AgsI | TTSAA | 5 cut(s) | 13, 68, 686, 824, 995 |
| AjnI | CCWGG | 4 cut(s) | 145, 198, 577, 736 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1088, 1120 |
| AluBI | AGCT | 5 cut(s) | 55, 410, 647, 743, 1139 |
| AluI | AGCT | 5 cut(s) | 55, 410, 647, 743, 1139 |
| Alw21I | GWGCWC | 3 cut(s) | 57, 745, 1204 |
| Alw26I | GTCTC | 2 cut(s) | 470, 1134 |
| AlwI | GGATC | 2 cut(s) | 1053, 1266 |
| Ama87I | CYCGRG | 2 cut(s) | 56, 652 |
| Aor51HI | AGCGCT | 1 cut(s) | 456 |
| AoxI | GGCC | 3 cut(s) | 148, 1005, 1178 |
| ApeKI | GCWGC | 3 cut(s) | 89, 407, 410 |
| ApoI | RAATTY | 3 cut(s) | 473, 1118, 1265 |
| AspLEI | GCGC | 2 cut(s) | 103, 457 |
| AspS9I | GGNCC | 2 cut(s) | 885, 1005 |
| AsuHPI | GGTGA | 1 cut(s) | 1327 |
| AsuII | TTCGAA | 1 cut(s) | 1215 |
| AvaI | CYCGRG | 2 cut(s) | 56, 652 |
| AvaII | GGWCC | 1 cut(s) | 885 |
| BaeGI | GKGCMC | 2 cut(s) | 157, 385 |
| BanI | GGYRCC | 1 cut(s) | 380 |
| BanII | GRGCYC | 2 cut(s) | 57, 745 |
| BbsI | GAAGAC | 2 cut(s) | 268, 300 |
| Bbv12I | GWGCWC | 3 cut(s) | 57, 745, 1204 |
| BbvI | GCAGC | 3 cut(s) | 76, 397, 419 |
| BccI | CCATC | 6 cut(s) | 88, 433, 860, 996, 1226, 1331 |
| BceAI | ACGGC | 2 cut(s) | 135, 552 |
| BciT130I | CCWGG | 4 cut(s) | 147, 200, 579, 738 |
| BciVI | GTATCC | 1 cut(s) | 998 |
| BcoDI | GTCTC | 2 cut(s) | 470, 1134 |
| BfaI | CTAG | 5 cut(s) | 126, 435, 915, 1026, 1197 |
| BfmI | CTRYAG | 2 cut(s) | 411, 450 |
| BfoI | RGCGCY | 1 cut(s) | 458 |
| BfuAI | ACCTGC | 1 cut(s) | 230 |
| BfuI | GTATCC | 1 cut(s) | 998 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 633 |
| BisI | GCNGC | 4 cut(s) | 87, 90, 408, 411 |
| BlsI | GCNGC | 4 cut(s) | 88, 91, 409, 412 |
| Bme1390I | CCNGG | 4 cut(s) | 147, 200, 579, 738 |
| Bme18I | GGWCC | 1 cut(s) | 885 |
| BmeT110I | CYCGRG | 2 cut(s) | 56, 652 |
| BmgT120I | GGNCC | 2 cut(s) | 885, 1005 |
| BmiI | GGNNCC | 2 cut(s) | 382, 733 |
| BmrFI | CCNGG | 4 cut(s) | 147, 200, 579, 738 |
| BmsI | GCATC | 5 cut(s) | 109, 325, 603, 1195, 1308 |
| BpiI | GAAGAC | 2 cut(s) | 268, 300 |
| BpmI | CTGGAG | 3 cut(s) | 221, 663, 759 |
| Bpu14I | TTCGAA | 1 cut(s) | 1215 |
| BpuEI | CTTGAG | 3 cut(s) | 66, 452, 1116 |
| Bsa29I | ATCGAT | 1 cut(s) | 597 |
| BsaHI | GRCGYC | 1 cut(s) | 695 |
| BsaJI | CCNNGG | 3 cut(s) | 568, 736, 878 |
| BsaWI | WCCGGW | 1 cut(s) | 223 |
| Bse118I | RCCGGY | 2 cut(s) | 632, 1176 |
| Bse1I | ACTGG | 2 cut(s) | 346, 1220 |
| Bse3DI | GCAATG | 2 cut(s) | 402, 1164 |
| BseBI | CCWGG | 4 cut(s) | 147, 200, 579, 738 |
| BseCI | ATCGAT | 1 cut(s) | 597 |
| BseDI | CCNNGG | 3 cut(s) | 568, 736, 878 |
| BseGI | GGATG | 5 cut(s) | 124, 444, 1102, 1186, 1342 |
| BseMI | GCAATG | 2 cut(s) | 402, 1164 |
| BseMII | CTCAG | 1 cut(s) | 377 |
| BseNI | ACTGG | 2 cut(s) | 346, 1220 |
| BseRI | GAGGAG | 2 cut(s) | 798, 941 |
| BseSI | GKGCMC | 2 cut(s) | 157, 385 |
| BseXI | GCAGC | 3 cut(s) | 76, 397, 419 |
| BseYI | CCCAGC | 1 cut(s) | 636 |
| Bsh1236I | CGCG | 1 cut(s) | 709 |
| BshFI | GGCC | 3 cut(s) | 150, 1007, 1180 |
| BshNI | GGYRCC | 1 cut(s) | 380 |
| BshVI | ATCGAT | 1 cut(s) | 597 |
| BsiHKAI | GWGCWC | 3 cut(s) | 57, 745, 1204 |
| BsiHKCI | CYCGRG | 2 cut(s) | 56, 652 |
| BsiSI | CCGG | 3 cut(s) | 224, 633, 1177 |
| BslFI | GGGAC | 2 cut(s) | 336, 366 |
| BsmAI | GTCTC | 2 cut(s) | 470, 1134 |
| BsmFI | GGGAC | 2 cut(s) | 336, 366 |
| BsmI | GAATGC | 3 cut(s) | 267, 396, 1250 |
| BsnI | GGCC | 3 cut(s) | 150, 1007, 1180 |
| BsoBI | CYCGRG | 2 cut(s) | 56, 652 |
| Bsp119I | TTCGAA | 1 cut(s) | 1215 |
| Bsp1286I | GDGCHC | 5 cut(s) | 57, 157, 385, 745, 1204 |
| Bsp143I | GATC | 6 cut(s) | 415, 429, 535, 1045, 1141, 1258 |
| BspACI | CCGC | 4 cut(s) | 61, 86, 253, 531 |
| BspANI | GGCC | 3 cut(s) | 150, 1007, 1180 |
| BspCNI | CTCAG | 1 cut(s) | 378 |
| BspDI | ATCGAT | 1 cut(s) | 597 |
| BspFNI | CGCG | 1 cut(s) | 709 |
| BspLI | GGNNCC | 2 cut(s) | 382, 733 |
| BspMAI | CTGCAG | 1 cut(s) | 415 |
| BspMI | ACCTGC | 1 cut(s) | 230 |
| BspPI | GGATC | 2 cut(s) | 1053, 1266 |
| BspQI | GCTCTTC | 1 cut(s) | 45 |
| BspT104I | TTCGAA | 1 cut(s) | 1215 |
| BspT107I | GGYRCC | 1 cut(s) | 380 |
| BsrBI | CCGCTC | 1 cut(s) | 61 |
| BsrDI | GCAATG | 2 cut(s) | 402, 1164 |
| BsrFI | RCCGGY | 2 cut(s) | 632, 1176 |
| BsrI | ACTGG | 2 cut(s) | 346, 1220 |
| BssAI | RCCGGY | 2 cut(s) | 632, 1176 |
| BssECI | CCNNGG | 3 cut(s) | 568, 736, 878 |
| BssMI | GATC | 6 cut(s) | 415, 429, 535, 1045, 1141, 1258 |
| BssNAI | GTATAC | 1 cut(s) | 843 |
| BssNI | GRCGYC | 1 cut(s) | 695 |
| Bst1107I | GTATAC | 1 cut(s) | 843 |
| Bst2UI | CCWGG | 4 cut(s) | 147, 200, 579, 738 |
| Bst4CI | ACNGT | 3 cut(s) | 1022, 1032, 1168 |
| Bst6I | CTCTTC | 2 cut(s) | 45, 918 |
| BstACI | GRCGYC | 1 cut(s) | 695 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 600 |
| BstBI | TTCGAA | 1 cut(s) | 1215 |
| BstC8I | GCNNGC | 4 cut(s) | 396, 605, 720, 1301 |
| BstDEI | CTNAG | 1 cut(s) | 386 |
| BstDSI | CCRYGG | 1 cut(s) | 568 |
| BstF5I | GGATG | 5 cut(s) | 124, 444, 1102, 1186, 1342 |
| BstFNI | CGCG | 1 cut(s) | 709 |
| BstH2I | RGCGCY | 1 cut(s) | 458 |
| BstHHI | GCGC | 2 cut(s) | 103, 457 |
| BstKTI | GATC | 6 cut(s) | 418, 432, 538, 1048, 1144, 1261 |
| BstMAI | GTCTC | 2 cut(s) | 470, 1134 |
| BstMBI | GATC | 6 cut(s) | 415, 429, 535, 1045, 1141, 1258 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 98, 404, 452, 600, 633, 715 |
| BstNI | CCWGG | 4 cut(s) | 147, 200, 579, 738 |
| BstNSI | RCATGY | 2 cut(s) | 275, 607 |
| BstSCI | CCNGG | 4 cut(s) | 145, 198, 577, 736 |
| BstSFI | CTRYAG | 2 cut(s) | 411, 450 |
| BstSLI | GKGCMC | 2 cut(s) | 157, 385 |
| BstUI | CGCG | 1 cut(s) | 709 |
| BstV1I | GCAGC | 3 cut(s) | 76, 397, 419 |
| BstV2I | GAAGAC | 2 cut(s) | 268, 300 |
| BstX2I | RGATCY | 1 cut(s) | 1045 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 636 |
| BstYI | RGATCY | 1 cut(s) | 1045 |
| BstZ17I | GTATAC | 1 cut(s) | 843 |
| Bsu15I | ATCGAT | 1 cut(s) | 597 |
| BsuI | GTATCC | 1 cut(s) | 998 |
| BsuRI | GGCC | 3 cut(s) | 150, 1007, 1180 |
| BsuTUI | ATCGAT | 1 cut(s) | 597 |
| BtgI | CCRYGG | 1 cut(s) | 568 |
| BtgZI | GCGATG | 1 cut(s) | 107 |
| BtsCI | GGATG | 5 cut(s) | 124, 444, 1102, 1186, 1342 |
| BtsI | GCAGTG | 1 cut(s) | 696 |
| BtsIMutI | CAGTG | 2 cut(s) | 339, 696 |
| BveI | ACCTGC | 1 cut(s) | 230 |
| Cac8I | GCNNGC | 4 cut(s) | 396, 605, 720, 1301 |
| CfoI | GCGC | 2 cut(s) | 103, 457 |
| Cfr10I | RCCGGY | 2 cut(s) | 632, 1176 |
| Cfr13I | GGNCC | 2 cut(s) | 885, 1005 |
| ClaI | ATCGAT | 1 cut(s) | 597 |
| CseI | GACGC | 3 cut(s) | 684, 759, 1004 |
| Csp6I | GTAC | 3 cut(s) | 229, 256, 400 |
| CviAII | CATG | 6 cut(s) | 272, 583, 604, 1087, 1255, 1333 |
| CviQI | GTAC | 3 cut(s) | 229, 256, 400 |
| DdeI | CTNAG | 1 cut(s) | 386 |
| DpnI | GATC | 6 cut(s) | 417, 431, 537, 1047, 1143, 1260 |
| DpnII | GATC | 6 cut(s) | 415, 429, 535, 1045, 1141, 1258 |
| DraI | TTTAAA | 1 cut(s) | 1036 |
| EaeI | YGGCCR | 1 cut(s) | 148 |
| Eam1104I | CTCTTC | 2 cut(s) | 45, 918 |
| EarI | CTCTTC | 2 cut(s) | 45, 918 |
| Ecl136II | GAGCTC | 2 cut(s) | 55, 743 |
| Eco24I | GRGCYC | 2 cut(s) | 57, 745 |
| Eco47I | GGWCC | 1 cut(s) | 885 |
| Eco47III | AGCGCT | 1 cut(s) | 456 |
| Eco53kI | GAGCTC | 2 cut(s) | 55, 743 |
| Eco88I | CYCGRG | 2 cut(s) | 56, 652 |
| EcoICRI | GAGCTC | 2 cut(s) | 55, 743 |
| EcoRII | CCWGG | 4 cut(s) | 145, 198, 577, 736 |
| EcoT22I | ATGCAT | 1 cut(s) | 609 |
| EcoT38I | GRGCYC | 2 cut(s) | 57, 745 |
| FaeI | CATG | 6 cut(s) | 275, 586, 607, 1090, 1258, 1336 |
| FaqI | GGGAC | 2 cut(s) | 336, 366 |
| FatI | CATG | 6 cut(s) | 271, 582, 603, 1086, 1254, 1332 |
| FauI | CCCGC | 1 cut(s) | 538 |
| FblI | GTMKAC | 2 cut(s) | 481, 842 |
| Fnu4HI | GCNGC | 4 cut(s) | 87, 90, 408, 411 |
| FokI | GGATG | 4 cut(s) | 131, 451, 1109, 1173 |
| FriOI | GRGCYC | 2 cut(s) | 57, 745 |
| Fsp4HI | GCNGC | 4 cut(s) | 87, 90, 408, 411 |
| FspBI | CTAG | 5 cut(s) | 126, 435, 915, 1026, 1197 |
| GlaI | GCGC | 2 cut(s) | 102, 456 |
| GluI | GCNGC | 4 cut(s) | 87, 90, 408, 411 |
| GsaI | CCCAGC | 1 cut(s) | 640 |
| GsuI | CTGGAG | 3 cut(s) | 221, 663, 759 |
| HaeII | RGCGCY | 1 cut(s) | 458 |
| HaeIII | GGCC | 3 cut(s) | 150, 1007, 1180 |
| HapII | CCGG | 3 cut(s) | 224, 633, 1177 |
| HgaI | GACGC | 3 cut(s) | 684, 759, 1004 |
| HhaI | GCGC | 2 cut(s) | 103, 457 |
| Hin1I | GRCGYC | 1 cut(s) | 695 |
| Hin1II | CATG | 6 cut(s) | 275, 586, 607, 1090, 1258, 1336 |
| Hin6I | GCGC | 2 cut(s) | 101, 455 |
| HinP1I | GCGC | 2 cut(s) | 101, 455 |
| HinfI | GANTC | 6 cut(s) | 64, 1127, 1150, 1193, 1240, 1277 |
| HpaII | CCGG | 3 cut(s) | 224, 633, 1177 |
| HphI | GGTGA | 1 cut(s) | 1327 |
| Hpy166II | GTNNAC | 5 cut(s) | 140, 229, 482, 843, 888 |
| Hpy188I | TCNGA | 4 cut(s) | 118, 249, 731, 879 |
| Hpy188III | TCNNGA | 9 cut(s) | 141, 362, 469, 683, 999, 1133, 1190, 1197, 1262 |
| Hpy8I | GTNNAC | 5 cut(s) | 140, 229, 482, 843, 888 |
| HpyAV | CCTTC | 2 cut(s) | 733, 1001 |
| HpyCH4III | ACNGT | 3 cut(s) | 1022, 1032, 1168 |
| HpyCH4IV | ACGT | 2 cut(s) | 37, 220 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 98, 404, 452, 600, 633, 715 |
| HpyF3I | CTNAG | 1 cut(s) | 386 |
| HpySE526I | ACGT | 2 cut(s) | 37, 220 |
| Hsp92I | GRCGYC | 1 cut(s) | 695 |
| Hsp92II | CATG | 6 cut(s) | 275, 586, 607, 1090, 1258, 1336 |
| HspAI | GCGC | 2 cut(s) | 101, 455 |
| Kzo9I | GATC | 6 cut(s) | 415, 429, 535, 1045, 1141, 1258 |
| LguI | GCTCTTC | 1 cut(s) | 45 |
| LmnI | GCTCC | 4 cut(s) | 591, 644, 740, 811 |
| Lsp1109I | GCAGC | 3 cut(s) | 76, 397, 419 |
| LweI | GCATC | 5 cut(s) | 109, 325, 603, 1195, 1308 |
| MaeI | CTAG | 5 cut(s) | 126, 435, 915, 1026, 1197 |
| MaeII | ACGT | 2 cut(s) | 37, 220 |
| MaeIII | GTNAC | 3 cut(s) | 851, 1016, 1340 |
| MalI | GATC | 6 cut(s) | 417, 431, 537, 1047, 1143, 1260 |
| MbiI | CCGCTC | 1 cut(s) | 61 |
| MboI | GATC | 6 cut(s) | 415, 429, 535, 1045, 1141, 1258 |
| MfeI | CAATTG | 1 cut(s) | 1324 |
| MflI | RGATCY | 1 cut(s) | 1045 |
| MhlI | GDGCHC | 5 cut(s) | 57, 157, 385, 745, 1204 |
| MluCI | AATT | 8 cut(s) | 8, 110, 473, 622, 1037, 1118, 1265, 1324 |
| MluI | ACGCGT | 1 cut(s) | 707 |
| MlyI | GAGTC | 2 cut(s) | 1136, 1286 |
| MmeI | TCCRAC | 1 cut(s) | 304 |
| Mph1103I | ATGCAT | 1 cut(s) | 609 |
| MseI | TTAA | 1 cut(s) | 1035 |
| MslI | CAYNNNNRTG | 2 cut(s) | 437, 1091 |
| MspA1I | CMGCKG | 2 cut(s) | 410, 533 |
| MspI | CCGG | 3 cut(s) | 224, 633, 1177 |
| MspR9I | CCNGG | 4 cut(s) | 147, 200, 579, 738 |
| MunI | CAATTG | 1 cut(s) | 1324 |
| Mva1269I | GAATGC | 3 cut(s) | 267, 396, 1250 |
| MvaI | CCWGG | 4 cut(s) | 147, 200, 579, 738 |
| MvnI | CGCG | 1 cut(s) | 709 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 98, 404, 452, 600, 633, 715 |
| NdeII | GATC | 6 cut(s) | 415, 429, 535, 1045, 1141, 1258 |
| NlaIII | CATG | 6 cut(s) | 275, 586, 607, 1090, 1258, 1336 |
| NlaIV | GGNNCC | 2 cut(s) | 382, 733 |
| NmuCI | GTSAC | 1 cut(s) | 1016 |
| NsiI | ATGCAT | 1 cut(s) | 609 |
| NspI | RCATGY | 2 cut(s) | 275, 607 |
| NspV | TTCGAA | 1 cut(s) | 1215 |
| PaeI | GCATGC | 1 cut(s) | 607 |
| PaeR7I | CTCGAG | 1 cut(s) | 56 |
| PciI | ACATGT | 1 cut(s) | 271 |
| PciSI | GCTCTTC | 1 cut(s) | 45 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 148 |
| PctI | GAATGC | 3 cut(s) | 267, 396, 1250 |
| PfeI | GAWTC | 4 cut(s) | 64, 1150, 1193, 1240 |
| PfoI | TCCNGGA | 1 cut(s) | 198 |
| PkrI | GCNGC | 4 cut(s) | 88, 91, 409, 412 |
| PleI | GAGTC | 2 cut(s) | 1135, 1285 |
| PpsI | GAGTC | 2 cut(s) | 1135, 1285 |
| PscI | ACATGT | 1 cut(s) | 271 |
| Psp124BI | GAGCTC | 2 cut(s) | 57, 745 |
| Psp6I | CCWGG | 4 cut(s) | 145, 198, 577, 736 |
| PspFI | CCCAGC | 1 cut(s) | 636 |
| PspGI | CCWGG | 4 cut(s) | 145, 198, 577, 736 |
| PspN4I | GGNNCC | 2 cut(s) | 382, 733 |
| PspPI | GGNCC | 2 cut(s) | 885, 1005 |
| PspXI | VCTCGAGB | 1 cut(s) | 56 |
| PstI | CTGCAG | 1 cut(s) | 415 |
| PsuI | RGATCY | 1 cut(s) | 1045 |
| PvuII | CAGCTG | 1 cut(s) | 410 |
| RsaI | GTAC | 3 cut(s) | 230, 257, 401 |
| RsaNI | GTAC | 3 cut(s) | 229, 256, 400 |
| RseI | CAYNNNNRTG | 2 cut(s) | 437, 1091 |
| SacI | GAGCTC | 2 cut(s) | 57, 745 |
| SapI | GCTCTTC | 1 cut(s) | 45 |
| SaqAI | TTAA | 1 cut(s) | 1035 |
| SatI | GCNGC | 4 cut(s) | 87, 90, 408, 411 |
| Sau3AI | GATC | 6 cut(s) | 415, 429, 535, 1045, 1141, 1258 |
| Sau96I | GGNCC | 2 cut(s) | 885, 1005 |
| SchI | GAGTC | 2 cut(s) | 1136, 1286 |
| ScrFI | CCNGG | 4 cut(s) | 147, 200, 579, 738 |
| SduI | GDGCHC | 5 cut(s) | 57, 157, 385, 745, 1204 |
| SfaNI | GCATC | 5 cut(s) | 109, 325, 603, 1195, 1308 |
| SfcI | CTRYAG | 2 cut(s) | 411, 450 |
| Sfr274I | CTCGAG | 1 cut(s) | 56 |
| SfuI | TTCGAA | 1 cut(s) | 1215 |
| SinI | GGWCC | 1 cut(s) | 885 |
| SlaI | CTCGAG | 1 cut(s) | 56 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 437, 1091 |
| SmlI | CTYRAG | 4 cut(s) | 56, 81, 467, 1131 |
| SmoI | CTYRAG | 4 cut(s) | 56, 81, 467, 1131 |
| SphI | GCATGC | 1 cut(s) | 607 |
| Sse9I | AATT | 8 cut(s) | 8, 110, 473, 622, 1037, 1118, 1265, 1324 |
| SsiI | CCGC | 4 cut(s) | 61, 86, 253, 531 |
| SspMI | CTAG | 5 cut(s) | 126, 435, 915, 1026, 1197 |
| SstI | GAGCTC | 2 cut(s) | 57, 745 |
| StyD4I | CCNGG | 4 cut(s) | 145, 198, 577, 736 |
| TaaI | ACNGT | 3 cut(s) | 1022, 1032, 1168 |
| TaiI | ACGT | 2 cut(s) | 40, 223 |
| TasI | AATT | 8 cut(s) | 8, 110, 473, 622, 1037, 1118, 1265, 1324 |
| TauI | GCSGC | 1 cut(s) | 89 |
| TfiI | GAWTC | 4 cut(s) | 64, 1150, 1193, 1240 |
| Tru1I | TTAA | 1 cut(s) | 1035 |
| Tru9I | TTAA | 1 cut(s) | 1035 |
| TscAI | CASTG | 2 cut(s) | 346, 696 |
| TseFI | GTSAC | 1 cut(s) | 1016 |
| TseI | GCWGC | 3 cut(s) | 89, 407, 410 |
| Tsp45I | GTSAC | 1 cut(s) | 1016 |
| TspDTI | ATGAA | 4 cut(s) | 249, 1070, 1163, 1243 |
| TspRI | CASTG | 2 cut(s) | 346, 696 |
| VpaK11BI | GGWCC | 1 cut(s) | 885 |
| XapI | RAATTY | 3 cut(s) | 473, 1118, 1265 |
| XbaI | TCTAGA | 1 cut(s) | 1196 |
| XceI | RCATGY | 2 cut(s) | 275, 607 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 346 |
| XhoI | CTCGAG | 1 cut(s) | 56 |
| XmiI | GTMKAC | 2 cut(s) | 481, 842 |
| XspI | CTAG | 5 cut(s) | 126, 435, 915, 1026, 1197 |
| Zsp2I | ATGCAT | 1 cut(s) | 609 |