Ribosomal protein-like protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Pkinase | PF00069 | 155 - 390 | 2.5e-17 | Protein kinase domain |
| PK_Tyr_Ser-Thr | PF07714 | 156 - 427 | 5.2e-07 | Protein tyrosine and serine/threonine kinase |
| Pkinase_fungal | PF17667 | 268 - 365 | 5.1e-07 | Fungal protein kinase |
| DUF7477 | PF24289 | 454 - 721 | 1.8e-162 | Domain of unknown function (DUF7477) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 681, 1565 |
| Acc36I | ACCTGC | 2 cut(s) | 106, 1450 |
| AccB1I | GGYRCC | 1 cut(s) | 421 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 738 |
| AccBSI | CCGCTC | 1 cut(s) | 896 |
| AccI | GTMKAC | 2 cut(s) | 1054, 1769 |
| AccII | CGCG | 4 cut(s) | 97, 110, 225, 522 |
| AccIII | TCCGGA | 1 cut(s) | 1980 |
| AclWI | GGATC | 3 cut(s) | 460, 1682, 2016 |
| AcoI | YGGCCR | 1 cut(s) | 1366 |
| AcsI | RAATTY | 2 cut(s) | 578, 1247 |
| AcuI | CTGAAG | 3 cut(s) | 188, 741, 1891 |
| AcyI | GRCGYC | 1 cut(s) | 422 |
| AfaI | GTAC | 5 cut(s) | 418, 675, 1440, 2077, 2155 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 738, 1121, 1375, 1812, 1949 |
| AflIII | ACRYGT | 3 cut(s) | 95, 1531, 2098 |
| AgsI | TTSAA | 6 cut(s) | 443, 1387, 1461, 1629, 1810, 1854 |
| AjnI | CCWGG | 4 cut(s) | 553, 1359, 2003, 2047 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 465, 497 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 535, 567 |
| Alw21I | GWGCWC | 2 cut(s) | 588, 1345 |
| Alw26I | GTCTC | 3 cut(s) | 90, 1896, 2060 |
| AlwI | GGATC | 3 cut(s) | 460, 1682, 2016 |
| Aor13HI | TCCGGA | 1 cut(s) | 1980 |
| AoxI | GGCC | 4 cut(s) | 137, 1322, 1366, 1555 |
| ApeKI | GCWGC | 7 cut(s) | 184, 392, 603, 606, 1208, 1411, 1997 |
| ApoI | RAATTY | 2 cut(s) | 578, 1247 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 535, 567 |
| AseI | ATTAAT | 1 cut(s) | 1277 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 438, 1839 |
| AspLEI | GCGC | 2 cut(s) | 424, 2043 |
| AspS9I | GGNCC | 5 cut(s) | 61, 220, 551, 614, 728 |
| AsuHPI | GGTGA | 5 cut(s) | 278, 1145, 1170, 1759, 2063 |
| AsuII | TTCGAA | 1 cut(s) | 13 |
| AvaII | GGWCC | 5 cut(s) | 61, 220, 551, 614, 728 |
| BaeGI | GKGCMC | 1 cut(s) | 1600 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1478, 1511 |
| BalI | TGGCCA | 1 cut(s) | 1368 |
| BanI | GGYRCC | 1 cut(s) | 421 |
| BbsI | GAAGAC | 2 cut(s) | 255, 1569 |
| Bbv12I | GWGCWC | 2 cut(s) | 588, 1345 |
| BbvCI | CCTCAGC | 1 cut(s) | 123 |
| BbvI | GCAGC | 7 cut(s) | 171, 379, 590, 618, 1220, 1423, 1984 |
| BccI | CCATC | 7 cut(s) | 349, 895, 1107, 1162, 1331, 1400, 1547 |
| BceAI | ACGGC | 2 cut(s) | 40, 435 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1058, 1092 |
| BciT130I | CCWGG | 4 cut(s) | 555, 1361, 2005, 2049 |
| BclI | TGATCA | 2 cut(s) | 979, 1912 |
| BcoDI | GTCTC | 3 cut(s) | 90, 1896, 2060 |
| BfaI | CTAG | 8 cut(s) | 39, 725, 834, 1020, 1050, 1151, 1433, 2091 |
| BfmI | CTRYAG | 3 cut(s) | 604, 774, 1992 |
| BfoI | RGCGCY | 1 cut(s) | 425 |
| BfuAI | ACCTGC | 2 cut(s) | 106, 1450 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1365 |
| Bme1390I | CCNGG | 4 cut(s) | 555, 1361, 2005, 2049 |
| Bme18I | GGWCC | 5 cut(s) | 61, 220, 551, 614, 728 |
| BmgT120I | GGNCC | 5 cut(s) | 61, 220, 551, 614, 728 |
| BmiI | GGNNCC | 6 cut(s) | 63, 192, 423, 730, 1762, 1871 |
| BmrFI | CCNGG | 4 cut(s) | 555, 1361, 2005, 2049 |
| BmrI | ACTGGG | 2 cut(s) | 726, 1759 |
| BmsI | GCATC | 5 cut(s) | 816, 1467, 1504, 1600, 1962 |
| BmuI | ACTGGG | 2 cut(s) | 726, 1759 |
| BpiI | GAAGAC | 2 cut(s) | 255, 1569 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1050, 1082 |
| BpmI | CTGGAG | 1 cut(s) | 839 |
| Bpu10I | CCTNAGC | 1 cut(s) | 123 |
| Bpu14I | TTCGAA | 1 cut(s) | 13 |
| BpuEI | CTTGAG | 5 cut(s) | 397, 882, 940, 1247, 2047 |
| Bsa29I | ATCGAT | 1 cut(s) | 812 |
| BsaHI | GRCGYC | 1 cut(s) | 422 |
| BsaI | GGTCTC | 1 cut(s) | 2060 |
| BsaJI | CCNNGG | 7 cut(s) | 28, 102, 140, 925, 1115, 1415, 2004 |
| BsaWI | WCCGGW | 1 cut(s) | 1980 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1822, 1852 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 738, 1121, 1375, 1812, 1949 |
| Bse118I | RCCGGY | 1 cut(s) | 1872 |
| Bse1I | ACTGG | 2 cut(s) | 732, 1765 |
| BseAI | TCCGGA | 1 cut(s) | 1980 |
| BseBI | CCWGG | 4 cut(s) | 555, 1361, 2005, 2049 |
| BseCI | ATCGAT | 1 cut(s) | 812 |
| BseDI | CCNNGG | 7 cut(s) | 28, 102, 140, 925, 1115, 1415, 2004 |
| BseGI | GGATG | 4 cut(s) | 748, 1482, 1615, 1953 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 738, 1121, 1375, 1812, 1949 |
| BseMII | CTCAG | 2 cut(s) | 114, 1358 |
| BseNI | ACTGG | 2 cut(s) | 732, 1765 |
| BseRI | GAGGAG | 8 cut(s) | 188, 191, 320, 323, 326, 329, 332, 335 |
| BseSI | GKGCMC | 1 cut(s) | 1600 |
| BseXI | GCAGC | 7 cut(s) | 171, 379, 590, 618, 1220, 1423, 1984 |
| BseYI | CCCAGC | 2 cut(s) | 395, 1865 |
| Bsh1236I | CGCG | 4 cut(s) | 97, 110, 225, 522 |
| Bsh1285I | CGRYCG | 1 cut(s) | 108 |
| BshFI | GGCC | 4 cut(s) | 139, 1324, 1368, 1557 |
| BshNI | GGYRCC | 1 cut(s) | 421 |
| BshVI | ATCGAT | 1 cut(s) | 812 |
| BsiEI | CGRYCG | 1 cut(s) | 108 |
| BsiHKAI | GWGCWC | 2 cut(s) | 588, 1345 |
| BsiSI | CCGG | 5 cut(s) | 5, 188, 194, 1873, 1981 |
| BslFI | GGGAC | 2 cut(s) | 287, 710 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 738, 1121, 1375, 1812, 1949 |
| BsmAI | GTCTC | 3 cut(s) | 90, 1896, 2060 |
| BsmBI | CGTCTC | 1 cut(s) | 90 |
| BsmFI | GGGAC | 2 cut(s) | 287, 710 |
| BsmI | GAATGC | 1 cut(s) | 1903 |
| BsnI | GGCC | 4 cut(s) | 139, 1324, 1368, 1557 |
| Bso31I | GGTCTC | 1 cut(s) | 2060 |
| Bsp119I | TTCGAA | 1 cut(s) | 13 |
| Bsp1286I | GDGCHC | 3 cut(s) | 588, 1345, 1600 |
| Bsp13I | TCCGGA | 1 cut(s) | 1980 |
| Bsp143I | GATC | 6 cut(s) | 452, 979, 1230, 1674, 1912, 2008 |
| Bsp19I | CCATGG | 1 cut(s) | 1115 |
| Bsp68I | TCGCGA | 1 cut(s) | 110 |
| BspANI | GGCC | 4 cut(s) | 139, 1324, 1368, 1557 |
| BspCNI | CTCAG | 2 cut(s) | 115, 1357 |
| BspDI | ATCGAT | 1 cut(s) | 812 |
| BspEI | TCCGGA | 1 cut(s) | 1980 |
| BspFNI | CGCG | 4 cut(s) | 97, 110, 225, 522 |
| BspLI | GGNNCC | 6 cut(s) | 63, 192, 423, 730, 1762, 1871 |
| BspMAI | CTGCAG | 2 cut(s) | 608, 778 |
| BspMI | ACCTGC | 2 cut(s) | 106, 1450 |
| BspPI | GGATC | 3 cut(s) | 460, 1682, 2016 |
| BspQI | GCTCTTC | 1 cut(s) | 1251 |
| BspT104I | TTCGAA | 1 cut(s) | 13 |
| BspT107I | GGYRCC | 1 cut(s) | 421 |
| BspTNI | GGTCTC | 1 cut(s) | 2060 |
| BsrBI | CCGCTC | 1 cut(s) | 896 |
| BsrFI | RCCGGY | 1 cut(s) | 1872 |
| BsrI | ACTGG | 2 cut(s) | 732, 1765 |
| BssAI | RCCGGY | 1 cut(s) | 1872 |
| BssECI | CCNNGG | 7 cut(s) | 28, 102, 140, 925, 1115, 1415, 2004 |
| BssMI | GATC | 6 cut(s) | 452, 979, 1230, 1674, 1912, 2008 |
| BssNAI | GTATAC | 1 cut(s) | 1770 |
| BssNI | GRCGYC | 1 cut(s) | 422 |
| BssT1I | CCWWGG | 3 cut(s) | 925, 1115, 1415 |
| Bst1107I | GTATAC | 1 cut(s) | 1770 |
| Bst2UI | CCWGG | 4 cut(s) | 555, 1361, 2005, 2049 |
| Bst4CI | ACNGT | 5 cut(s) | 106, 1009, 1287, 1779, 2158 |
| Bst6I | CTCTTC | 4 cut(s) | 297, 333, 402, 1251 |
| BstACI | GRCGYC | 1 cut(s) | 422 |
| BstBI | TTCGAA | 1 cut(s) | 13 |
| BstC8I | GCNNGC | 4 cut(s) | 99, 765, 1559, 1903 |
| BstDEI | CTNAG | 3 cut(s) | 123, 1214, 1344 |
| BstDSI | CCRYGG | 2 cut(s) | 102, 1115 |
| BstF5I | GGATG | 4 cut(s) | 748, 1482, 1615, 1953 |
| BstFNI | CGCG | 4 cut(s) | 97, 110, 225, 522 |
| BstH2I | RGCGCY | 1 cut(s) | 425 |
| BstHHI | GCGC | 2 cut(s) | 424, 2043 |
| BstKTI | GATC | 6 cut(s) | 455, 982, 1233, 1677, 1915, 2011 |
| BstMAI | GTCTC | 3 cut(s) | 90, 1896, 2060 |
| BstMBI | GATC | 6 cut(s) | 452, 979, 1230, 1674, 1912, 2008 |
| BstMCI | CGRYCG | 1 cut(s) | 108 |
| BstNI | CCWGG | 4 cut(s) | 555, 1361, 2005, 2049 |
| BstNSI | RCATGY | 3 cut(s) | 724, 1535, 2102 |
| BstSCI | CCNGG | 4 cut(s) | 553, 1359, 2003, 2047 |
| BstSFI | CTRYAG | 3 cut(s) | 604, 774, 1992 |
| BstSLI | GKGCMC | 1 cut(s) | 1600 |
| BstUI | CGCG | 4 cut(s) | 97, 110, 225, 522 |
| BstV1I | GCAGC | 7 cut(s) | 171, 379, 590, 618, 1220, 1423, 1984 |
| BstV2I | GAAGAC | 2 cut(s) | 255, 1569 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 627 |
| BstZ17I | GTATAC | 1 cut(s) | 1770 |
| Bsu15I | ATCGAT | 1 cut(s) | 812 |
| BsuRI | GGCC | 4 cut(s) | 139, 1324, 1368, 1557 |
| BsuTUI | ATCGAT | 1 cut(s) | 812 |
| BtgI | CCRYGG | 2 cut(s) | 102, 1115 |
| BtgZI | GCGATG | 1 cut(s) | 782 |
| BtsCI | GGATG | 4 cut(s) | 748, 1482, 1615, 1953 |
| BtsIMutI | CAGTG | 3 cut(s) | 572, 1283, 1915 |
| BtuMI | TCGCGA | 1 cut(s) | 110 |
| BveI | ACCTGC | 2 cut(s) | 106, 1450 |
| Cac8I | GCNNGC | 4 cut(s) | 99, 765, 1559, 1903 |
| CfoI | GCGC | 2 cut(s) | 424, 2043 |
| Cfr10I | RCCGGY | 1 cut(s) | 1872 |
| Cfr13I | GGNCC | 5 cut(s) | 61, 220, 551, 614, 728 |
| ClaI | ATCGAT | 1 cut(s) | 812 |
| CseI | GACGC | 1 cut(s) | 103 |
| CsiI | ACCWGGT | 1 cut(s) | 2047 |
| Csp6I | GTAC | 5 cut(s) | 417, 674, 1439, 2076, 2154 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1946, 1981 |
| CviQI | GTAC | 5 cut(s) | 417, 674, 1439, 2076, 2154 |
| DdeI | CTNAG | 3 cut(s) | 123, 1214, 1344 |
| DinI | GGCGCC | 1 cut(s) | 423 |
| DpnI | GATC | 6 cut(s) | 454, 981, 1232, 1676, 1914, 2010 |
| DpnII | GATC | 6 cut(s) | 452, 979, 1230, 1674, 1912, 2008 |
| EaeI | YGGCCR | 1 cut(s) | 1366 |
| Eam1104I | CTCTTC | 4 cut(s) | 297, 333, 402, 1251 |
| EarI | CTCTTC | 4 cut(s) | 297, 333, 402, 1251 |
| EciI | GGCGGA | 1 cut(s) | 14 |
| Eco130I | CCWWGG | 3 cut(s) | 925, 1115, 1415 |
| Eco31I | GGTCTC | 1 cut(s) | 2060 |
| Eco47I | GGWCC | 5 cut(s) | 61, 220, 551, 614, 728 |
| Eco57I | CTGAAG | 3 cut(s) | 188, 741, 1891 |
| EcoO109I | RGGNCCY | 1 cut(s) | 728 |
| EcoRII | CCWGG | 4 cut(s) | 553, 1359, 2003, 2047 |
| EcoT14I | CCWWGG | 3 cut(s) | 925, 1115, 1415 |
| EgeI | GGCGCC | 1 cut(s) | 423 |
| EheI | GGCGCC | 1 cut(s) | 423 |
| ErhI | CCWWGG | 3 cut(s) | 925, 1115, 1415 |
| Esp3I | CGTCTC | 1 cut(s) | 90 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2004, 2036 |
| FaqI | GGGAC | 2 cut(s) | 287, 710 |
| FauI | CCCGC | 2 cut(s) | 75, 1213 |
| FauNDI | CATATG | 1 cut(s) | 622 |
| FbaI | TGATCA | 2 cut(s) | 979, 1912 |
| FblI | GTMKAC | 2 cut(s) | 1054, 1769 |
| FokI | GGATG | 4 cut(s) | 755, 1489, 1622, 1940 |
| FspBI | CTAG | 8 cut(s) | 39, 725, 834, 1020, 1050, 1151, 1433, 2091 |
| GlaI | GCGC | 2 cut(s) | 423, 2042 |
| GsaI | CCCAGC | 2 cut(s) | 399, 1869 |
| GsuI | CTGGAG | 1 cut(s) | 839 |
| HaeII | RGCGCY | 1 cut(s) | 425 |
| HaeIII | GGCC | 4 cut(s) | 139, 1324, 1368, 1557 |
| HapII | CCGG | 5 cut(s) | 5, 188, 194, 1873, 1981 |
| HgaI | GACGC | 1 cut(s) | 103 |
| HhaI | GCGC | 2 cut(s) | 424, 2043 |
| Hin1I | GRCGYC | 1 cut(s) | 422 |
| Hin6I | GCGC | 2 cut(s) | 422, 2041 |
| HinP1I | GCGC | 2 cut(s) | 422, 2041 |
| HincII | GTYRAC | 2 cut(s) | 538, 922 |
| HindII | GTYRAC | 2 cut(s) | 538, 922 |
| HindIII | AAGCTT | 1 cut(s) | 479 |
| HinfI | GANTC | 7 cut(s) | 251, 257, 803, 814, 1070, 1796, 2122 |
| HpaII | CCGG | 5 cut(s) | 5, 188, 194, 1873, 1981 |
| HphI | GGTGA | 5 cut(s) | 278, 1145, 1170, 1759, 2063 |
| Hpy166II | GTNNAC | 6 cut(s) | 538, 637, 922, 1055, 1240, 1770 |
| Hpy188I | TCNGA | 7 cut(s) | 61, 241, 256, 262, 1347, 1476, 1896 |
| Hpy8I | GTNNAC | 6 cut(s) | 538, 637, 922, 1055, 1240, 1770 |
| Hpy99I | CGWCG | 3 cut(s) | 61, 522, 1511 |
| HpyCH4III | ACNGT | 5 cut(s) | 106, 1009, 1287, 1779, 2158 |
| HpyCH4IV | ACGT | 3 cut(s) | 985, 1506, 2152 |
| HpyCH4V | TGCA | 8 cut(s) | 606, 776, 829, 847, 1517, 1550, 1663, 2000 |
| HpyF3I | CTNAG | 3 cut(s) | 123, 1214, 1344 |
| HpySE526I | ACGT | 3 cut(s) | 985, 1506, 2152 |
| Hsp92I | GRCGYC | 1 cut(s) | 422 |
| HspAI | GCGC | 2 cut(s) | 422, 2041 |
| KasI | GGCGCC | 1 cut(s) | 421 |
| Kpn2I | TCCGGA | 1 cut(s) | 1980 |
| Ksp22I | TGATCA | 2 cut(s) | 979, 1912 |
| Kzo9I | GATC | 6 cut(s) | 452, 979, 1230, 1674, 1912, 2008 |
| LguI | GCTCTTC | 1 cut(s) | 1251 |
| LmnI | GCTCC | 4 cut(s) | 7, 190, 1869, 1924 |
| Lsp1109I | GCAGC | 7 cut(s) | 171, 379, 590, 618, 1220, 1423, 1984 |
| LweI | GCATC | 5 cut(s) | 816, 1467, 1504, 1600, 1962 |
| MabI | ACCWGGT | 1 cut(s) | 2047 |
| MaeI | CTAG | 8 cut(s) | 39, 725, 834, 1020, 1050, 1151, 1433, 2091 |
| MaeII | ACGT | 3 cut(s) | 985, 1506, 2152 |
| MaeIII | GTNAC | 2 cut(s) | 523, 1846 |
| MalI | GATC | 6 cut(s) | 454, 981, 1232, 1676, 1914, 2010 |
| MbiI | CCGCTC | 1 cut(s) | 896 |
| MboI | GATC | 6 cut(s) | 452, 979, 1230, 1674, 1912, 2008 |
| MhlI | GDGCHC | 3 cut(s) | 588, 1345, 1600 |
| MlsI | TGGCCA | 1 cut(s) | 1368 |
| MluI | ACGCGT | 1 cut(s) | 95 |
| MluNI | TGGCCA | 1 cut(s) | 1368 |
| Mly113I | GGCGCC | 1 cut(s) | 422 |
| MlyI | GAGTC | 2 cut(s) | 245, 812 |
| MmeI | TCCRAC | 1 cut(s) | 39 |
| Mox20I | TGGCCA | 1 cut(s) | 1368 |
| MroI | TCCGGA | 1 cut(s) | 1980 |
| MroXI | GAANNNNTTC | 2 cut(s) | 438, 1839 |
| MscI | TGGCCA | 1 cut(s) | 1368 |
| MseI | TTAA | 3 cut(s) | 1277, 1328, 2164 |
| MslI | CAYNNNNRTG | 2 cut(s) | 625, 852 |
| Msp20I | TGGCCA | 1 cut(s) | 1368 |
| MspA1I | CMGCKG | 1 cut(s) | 1997 |
| MspI | CCGG | 5 cut(s) | 5, 188, 194, 1873, 1981 |
| MspR9I | CCNGG | 4 cut(s) | 555, 1361, 2005, 2049 |
| Mva1269I | GAATGC | 1 cut(s) | 1903 |
| MvaI | CCWGG | 4 cut(s) | 555, 1361, 2005, 2049 |
| MvnI | CGCG | 4 cut(s) | 97, 110, 225, 522 |
| NarI | GGCGCC | 1 cut(s) | 422 |
| NcoI | CCATGG | 1 cut(s) | 1115 |
| NdeI | CATATG | 1 cut(s) | 622 |
| NdeII | GATC | 6 cut(s) | 452, 979, 1230, 1674, 1912, 2008 |
| NlaIV | GGNNCC | 6 cut(s) | 63, 192, 423, 730, 1762, 1871 |
| NmeAIII | GCCGAG | 2 cut(s) | 53, 165 |
| NruI | TCGCGA | 1 cut(s) | 110 |
| NspI | RCATGY | 3 cut(s) | 724, 1535, 2102 |
| NspV | TTCGAA | 1 cut(s) | 13 |
| PciI | ACATGT | 2 cut(s) | 1531, 2098 |
| PciSI | GCTCTTC | 1 cut(s) | 1251 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 94 |
| PctI | GAATGC | 1 cut(s) | 1903 |
| PdmI | GAANNNNTTC | 2 cut(s) | 438, 1839 |
| PfeI | GAWTC | 5 cut(s) | 257, 814, 1070, 1796, 2122 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 738 |
| PleI | GAGTC | 2 cut(s) | 245, 811 |
| PluTI | GGCGCC | 1 cut(s) | 425 |
| PpsI | GAGTC | 2 cut(s) | 245, 811 |
| PpuMI | RGGWCCY | 1 cut(s) | 728 |
| PscI | ACATGT | 2 cut(s) | 1531, 2098 |
| PshBI | ATTAAT | 1 cut(s) | 1277 |
| PsiI | TTATAA | 2 cut(s) | 681, 1565 |
| Psp5II | RGGWCCY | 1 cut(s) | 728 |
| Psp6I | CCWGG | 4 cut(s) | 553, 1359, 2003, 2047 |
| PspFI | CCCAGC | 2 cut(s) | 395, 1865 |
| PspGI | CCWGG | 4 cut(s) | 553, 1359, 2003, 2047 |
| PspN4I | GGNNCC | 6 cut(s) | 63, 192, 423, 730, 1762, 1871 |
| PspPI | GGNCC | 5 cut(s) | 61, 220, 551, 614, 728 |
| PspPPI | RGGWCCY | 1 cut(s) | 728 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1753, 1785 |
| PstI | CTGCAG | 2 cut(s) | 608, 778 |
| PvuII | CAGCTG | 1 cut(s) | 1997 |
| RruI | TCGCGA | 1 cut(s) | 110 |
| RsaI | GTAC | 5 cut(s) | 418, 675, 1440, 2077, 2155 |
| RsaNI | GTAC | 5 cut(s) | 417, 674, 1439, 2076, 2154 |
| RseI | CAYNNNNRTG | 2 cut(s) | 625, 852 |
| SapI | GCTCTTC | 1 cut(s) | 1251 |
| SaqAI | TTAA | 3 cut(s) | 1277, 1328, 2164 |
| Sau3AI | GATC | 6 cut(s) | 452, 979, 1230, 1674, 1912, 2008 |
| Sau96I | GGNCC | 5 cut(s) | 61, 220, 551, 614, 728 |
| SchI | GAGTC | 2 cut(s) | 245, 812 |
| ScrFI | CCNGG | 4 cut(s) | 555, 1361, 2005, 2049 |
| SduI | GDGCHC | 3 cut(s) | 588, 1345, 1600 |
| SexAI | ACCWGGT | 1 cut(s) | 2047 |
| SfaNI | GCATC | 5 cut(s) | 816, 1467, 1504, 1600, 1962 |
| SfcI | CTRYAG | 3 cut(s) | 604, 774, 1992 |
| SfoI | GGCGCC | 1 cut(s) | 423 |
| SfuI | TTCGAA | 1 cut(s) | 13 |
| SinI | GGWCC | 5 cut(s) | 61, 220, 551, 614, 728 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 625, 852 |
| SmlI | CTYRAG | 5 cut(s) | 376, 897, 955, 1226, 2026 |
| SmoI | CTYRAG | 5 cut(s) | 376, 897, 955, 1226, 2026 |
| SspDI | GGCGCC | 1 cut(s) | 421 |
| SspI | AATATT | 1 cut(s) | 1390 |
| SspMI | CTAG | 8 cut(s) | 39, 725, 834, 1020, 1050, 1151, 1433, 2091 |
| StyD4I | CCNGG | 4 cut(s) | 553, 1359, 2003, 2047 |
| StyI | CCWWGG | 3 cut(s) | 925, 1115, 1415 |
| TaaI | ACNGT | 5 cut(s) | 106, 1009, 1287, 1779, 2158 |
| TaiI | ACGT | 3 cut(s) | 988, 1509, 2155 |
| TaqI | TCGA | 9 cut(s) | 13, 88, 564, 582, 801, 812, 1012, 1068, 1102 |
| TaqII | GACCGA | 1 cut(s) | 555 |
| TatI | WGTACW | 1 cut(s) | 673 |
| TauI | GCSGC | 5 cut(s) | 73, 76, 79, 460, 2018 |
| TfiI | GAWTC | 5 cut(s) | 257, 814, 1070, 1796, 2122 |
| Tru1I | TTAA | 3 cut(s) | 1277, 1328, 2164 |
| Tru9I | TTAA | 3 cut(s) | 1277, 1328, 2164 |
| TscAI | CASTG | 3 cut(s) | 579, 1290, 1915 |
| TseI | GCWGC | 7 cut(s) | 184, 392, 603, 606, 1208, 1411, 1997 |
| TspDTI | ATGAA | 7 cut(s) | 956, 1016, 1259, 1269, 1499, 1832, 2070 |
| TspGWI | ACGGA | 1 cut(s) | 72 |
| TspRI | CASTG | 3 cut(s) | 579, 1290, 1915 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 738 |
| VpaK11BI | GGWCC | 5 cut(s) | 61, 220, 551, 614, 728 |
| VspI | ATTAAT | 1 cut(s) | 1277 |
| XapI | RAATTY | 2 cut(s) | 578, 1247 |
| XbaI | TCTAGA | 1 cut(s) | 833 |
| XceI | RCATGY | 3 cut(s) | 724, 1535, 2102 |
| XmiI | GTMKAC | 2 cut(s) | 1054, 1769 |
| XmnI | GAANNNNTTC | 2 cut(s) | 438, 1839 |
| XspI | CTAG | 8 cut(s) | 39, 725, 834, 1020, 1050, 1151, 1433, 2091 |