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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 223 |
| AccBSI | CCGCTC | 1 cut(s) | 135 |
| AccI | GTMKAC | 1 cut(s) | 12 |
| AccIII | TCCGGA | 1 cut(s) | 408 |
| AciI | CCGC | 2 cut(s) | 133, 198 |
| AclWI | GGATC | 6 cut(s) | 252, 265, 269, 282, 406, 419 |
| AcoI | YGGCCR | 1 cut(s) | 531 |
| AcyI | GRCGYC | 1 cut(s) | 224 |
| AgsI | TTSAA | 3 cut(s) | 64, 195, 444 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 118 |
| AluBI | AGCT | 5 cut(s) | 213, 325, 344, 378, 548 |
| AluI | AGCT | 5 cut(s) | 213, 325, 344, 378, 548 |
| Alw21I | GWGCWC | 1 cut(s) | 591 |
| Alw44I | GTGCAC | 1 cut(s) | 587 |
| AlwI | GGATC | 6 cut(s) | 252, 265, 269, 282, 406, 419 |
| Ama87I | CYCGRG | 2 cut(s) | 80, 477 |
| Aor13HI | TCCGGA | 1 cut(s) | 408 |
| AoxI | GGCC | 2 cut(s) | 34, 531 |
| ApaLI | GTGCAC | 1 cut(s) | 587 |
| ApeKI | GCWGC | 2 cut(s) | 312, 322 |
| AspLEI | GCGC | 1 cut(s) | 226 |
| AspS9I | GGNCC | 1 cut(s) | 34 |
| AsuC2I | CCSGG | 3 cut(s) | 279, 290, 582 |
| AsuHPI | GGTGA | 2 cut(s) | 122, 319 |
| AvaI | CYCGRG | 2 cut(s) | 80, 477 |
| BaeGI | GKGCMC | 1 cut(s) | 591 |
| BamHI | GGATCC | 3 cut(s) | 257, 274, 411 |
| BanI | GGYRCC | 1 cut(s) | 223 |
| Bbv12I | GWGCWC | 1 cut(s) | 591 |
| BbvI | GCAGC | 2 cut(s) | 324, 334 |
| BceAI | ACGGC | 3 cut(s) | 211, 518, 546 |
| BcnI | CCSGG | 3 cut(s) | 279, 290, 582 |
| BfoI | RGCGCY | 1 cut(s) | 227 |
| BisI | GCNGC | 2 cut(s) | 313, 323 |
| BlsI | GCNGC | 2 cut(s) | 314, 324 |
| Bme1390I | CCNGG | 3 cut(s) | 279, 290, 582 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 118 |
| BmeT110I | CYCGRG | 2 cut(s) | 80, 477 |
| BmgT120I | GGNCC | 1 cut(s) | 34 |
| BmiI | GGNNCC | 4 cut(s) | 225, 259, 276, 413 |
| BmrFI | CCNGG | 3 cut(s) | 279, 290, 582 |
| BmsI | GCATC | 1 cut(s) | 255 |
| BpuEI | CTTGAG | 1 cut(s) | 140 |
| BpuMI | CCSGG | 3 cut(s) | 279, 290, 582 |
| BsaBI | GATNNNNATC | 1 cut(s) | 486 |
| BsaHI | GRCGYC | 1 cut(s) | 224 |
| BsaJI | CCNNGG | 1 cut(s) | 27 |
| BsaWI | WCCGGW | 3 cut(s) | 188, 248, 408 |
| Bse118I | RCCGGY | 1 cut(s) | 220 |
| Bse1I | ACTGG | 1 cut(s) | 16 |
| Bse8I | GATNNNNATC | 1 cut(s) | 486 |
| BseAI | TCCGGA | 1 cut(s) | 408 |
| BseDI | CCNNGG | 1 cut(s) | 27 |
| BseJI | GATNNNNATC | 1 cut(s) | 486 |
| BseNI | ACTGG | 1 cut(s) | 16 |
| BseRI | GAGGAG | 1 cut(s) | 613 |
| BseSI | GKGCMC | 1 cut(s) | 591 |
| BseX3I | CGGCCG | 1 cut(s) | 531 |
| BseXI | GCAGC | 2 cut(s) | 324, 334 |
| Bsh1285I | CGRYCG | 2 cut(s) | 534, 581 |
| BshFI | GGCC | 2 cut(s) | 36, 533 |
| BshNI | GGYRCC | 1 cut(s) | 223 |
| BsiEI | CGRYCG | 2 cut(s) | 534, 581 |
| BsiHKAI | GWGCWC | 1 cut(s) | 591 |
| BsiHKCI | CYCGRG | 2 cut(s) | 80, 477 |
| BsiSI | CCGG | 8 cut(s) | 189, 221, 249, 269, 278, 290, 409, 581 |
| BslFI | GGGAC | 3 cut(s) | 106, 149, 272 |
| BsmFI | GGGAC | 3 cut(s) | 106, 149, 272 |
| BsnI | GGCC | 2 cut(s) | 36, 533 |
| BsoBI | CYCGRG | 2 cut(s) | 80, 477 |
| Bsp1286I | GDGCHC | 1 cut(s) | 591 |
| Bsp13I | TCCGGA | 1 cut(s) | 408 |
| Bsp143I | GATC | 4 cut(s) | 257, 274, 411, 487 |
| Bsp19I | CCATGG | 1 cut(s) | 27 |
| BspACI | CCGC | 2 cut(s) | 133, 198 |
| BspANI | GGCC | 2 cut(s) | 36, 533 |
| BspEI | TCCGGA | 1 cut(s) | 408 |
| BspHI | TCATGA | 1 cut(s) | 490 |
| BspLI | GGNNCC | 4 cut(s) | 225, 259, 276, 413 |
| BspPI | GGATC | 6 cut(s) | 252, 265, 269, 282, 406, 419 |
| BspT107I | GGYRCC | 1 cut(s) | 223 |
| BsrBI | CCGCTC | 1 cut(s) | 135 |
| BsrFI | RCCGGY | 1 cut(s) | 220 |
| BsrI | ACTGG | 1 cut(s) | 16 |
| BssAI | RCCGGY | 1 cut(s) | 220 |
| BssECI | CCNNGG | 1 cut(s) | 27 |
| BssMI | GATC | 4 cut(s) | 257, 274, 411, 487 |
| BssNI | GRCGYC | 1 cut(s) | 224 |
| BssT1I | CCWWGG | 1 cut(s) | 27 |
| Bst4CI | ACNGT | 1 cut(s) | 118 |
| Bst6I | CTCTTC | 2 cut(s) | 443, 489 |
| BstACI | GRCGYC | 1 cut(s) | 224 |
| BstC8I | GCNNGC | 2 cut(s) | 222, 587 |
| BstDEI | CTNAG | 1 cut(s) | 462 |
| BstDSI | CCRYGG | 1 cut(s) | 27 |
| BstH2I | RGCGCY | 1 cut(s) | 227 |
| BstHHI | GCGC | 1 cut(s) | 226 |
| BstKTI | GATC | 4 cut(s) | 260, 277, 414, 490 |
| BstMBI | GATC | 4 cut(s) | 257, 274, 411, 487 |
| BstMCI | CGRYCG | 2 cut(s) | 534, 581 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 82, 350, 384, 539 |
| BstSCI | CCNGG | 3 cut(s) | 277, 288, 580 |
| BstSLI | GKGCMC | 1 cut(s) | 591 |
| BstV1I | GCAGC | 2 cut(s) | 324, 334 |
| BstX2I | RGATCY | 3 cut(s) | 257, 274, 411 |
| BstYI | RGATCY | 3 cut(s) | 257, 274, 411 |
| BstZI | CGGCCG | 1 cut(s) | 531 |
| BsuRI | GGCC | 2 cut(s) | 36, 533 |
| BtgI | CCRYGG | 1 cut(s) | 27 |
| Cac8I | GCNNGC | 2 cut(s) | 222, 587 |
| CciI | TCATGA | 1 cut(s) | 490 |
| CfoI | GCGC | 1 cut(s) | 226 |
| Cfr10I | RCCGGY | 1 cut(s) | 220 |
| Cfr13I | GGNCC | 1 cut(s) | 34 |
| CseI | GACGC | 1 cut(s) | 274 |
| CviAII | CATG | 3 cut(s) | 28, 491, 630 |
| DdeI | CTNAG | 1 cut(s) | 462 |
| DinI | GGCGCC | 1 cut(s) | 225 |
| DpnI | GATC | 4 cut(s) | 259, 276, 413, 489 |
| DpnII | GATC | 4 cut(s) | 257, 274, 411, 487 |
| DriI | GACNNNNNGTC | 1 cut(s) | 118 |
| EaeI | YGGCCR | 1 cut(s) | 531 |
| EagI | CGGCCG | 1 cut(s) | 531 |
| Eam1104I | CTCTTC | 2 cut(s) | 443, 489 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 118 |
| EarI | CTCTTC | 2 cut(s) | 443, 489 |
| EclXI | CGGCCG | 1 cut(s) | 531 |
| Eco130I | CCWWGG | 1 cut(s) | 27 |
| Eco52I | CGGCCG | 1 cut(s) | 531 |
| Eco88I | CYCGRG | 2 cut(s) | 80, 477 |
| EcoT14I | CCWWGG | 1 cut(s) | 27 |
| EgeI | GGCGCC | 1 cut(s) | 225 |
| EheI | GGCGCC | 1 cut(s) | 225 |
| ErhI | CCWWGG | 1 cut(s) | 27 |
| FaeI | CATG | 3 cut(s) | 31, 494, 633 |
| FaiI | YATR | 6 cut(s) | 29, 58, 90, 403, 492, 631 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 44, 76 |
| FaqI | GGGAC | 3 cut(s) | 106, 149, 272 |
| FatI | CATG | 3 cut(s) | 27, 490, 629 |
| FblI | GTMKAC | 1 cut(s) | 12 |
| Fnu4HI | GCNGC | 2 cut(s) | 313, 323 |
| Fsp4HI | GCNGC | 2 cut(s) | 313, 323 |
| GlaI | GCGC | 1 cut(s) | 225 |
| GluI | GCNGC | 2 cut(s) | 313, 323 |
| HaeII | RGCGCY | 1 cut(s) | 227 |
| HaeIII | GGCC | 2 cut(s) | 36, 533 |
| HapII | CCGG | 8 cut(s) | 189, 221, 249, 269, 278, 290, 409, 581 |
| HgaI | GACGC | 1 cut(s) | 274 |
| HhaI | GCGC | 1 cut(s) | 226 |
| Hin1I | GRCGYC | 1 cut(s) | 224 |
| Hin1II | CATG | 3 cut(s) | 31, 494, 633 |
| Hin6I | GCGC | 1 cut(s) | 224 |
| HinP1I | GCGC | 1 cut(s) | 224 |
| HindIII | AAGCTT | 1 cut(s) | 546 |
| HinfI | GANTC | 3 cut(s) | 127, 185, 613 |
| HpaII | CCGG | 8 cut(s) | 189, 221, 249, 269, 278, 290, 409, 581 |
| HphI | GGTGA | 2 cut(s) | 122, 319 |
| Hpy166II | GTNNAC | 3 cut(s) | 13, 95, 589 |
| Hpy188I | TCNGA | 1 cut(s) | 73 |
| Hpy188III | TCNNGA | 8 cut(s) | 48, 80, 409, 477, 479, 491, 576, 617 |
| Hpy8I | GTNNAC | 3 cut(s) | 13, 95, 589 |
| Hpy99I | CGWCG | 4 cut(s) | 182, 211, 539, 567 |
| HpyAV | CCTTC | 1 cut(s) | 441 |
| HpyCH4III | ACNGT | 1 cut(s) | 118 |
| HpyCH4IV | ACGT | 2 cut(s) | 177, 239 |
| HpyCH4V | TGCA | 3 cut(s) | 100, 108, 589 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 82, 350, 384, 539 |
| HpyF3I | CTNAG | 1 cut(s) | 462 |
| HpySE526I | ACGT | 2 cut(s) | 177, 239 |
| Hsp92I | GRCGYC | 1 cut(s) | 224 |
| Hsp92II | CATG | 3 cut(s) | 31, 494, 633 |
| HspAI | GCGC | 1 cut(s) | 224 |
| KasI | GGCGCC | 1 cut(s) | 223 |
| Kpn2I | TCCGGA | 1 cut(s) | 408 |
| KroI | GCCGGC | 1 cut(s) | 220 |
| KroNI | GCCGGC | 1 cut(s) | 222 |
| Kzo9I | GATC | 4 cut(s) | 257, 274, 411, 487 |
| LmnI | GCTCC | 2 cut(s) | 140, 600 |
| Lsp1109I | GCAGC | 2 cut(s) | 324, 334 |
| LweI | GCATC | 1 cut(s) | 255 |
| MaeII | ACGT | 2 cut(s) | 177, 239 |
| MaeIII | GTNAC | 2 cut(s) | 235, 240 |
| MalI | GATC | 4 cut(s) | 259, 276, 413, 489 |
| MbiI | CCGCTC | 1 cut(s) | 135 |
| MboI | GATC | 4 cut(s) | 257, 274, 411, 487 |
| MboII | GAAGA | 5 cut(s) | 340, 374, 460, 497, 506 |
| MflI | RGATCY | 3 cut(s) | 257, 274, 411 |
| MhlI | GDGCHC | 1 cut(s) | 591 |
| MluCI | AATT | 1 cut(s) | 103 |
| Mly113I | GGCGCC | 1 cut(s) | 224 |
| MlyI | GAGTC | 2 cut(s) | 121, 194 |
| MmeI | TCCRAC | 2 cut(s) | 198, 439 |
| MreI | CGCCGGCG | 1 cut(s) | 220 |
| MroI | TCCGGA | 1 cut(s) | 408 |
| MroNI | GCCGGC | 1 cut(s) | 220 |
| MslI | CAYNNNNRTG | 1 cut(s) | 443 |
| MspI | CCGG | 8 cut(s) | 189, 221, 249, 269, 278, 290, 409, 581 |
| MspR9I | CCNGG | 3 cut(s) | 279, 290, 582 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 82, 350, 384, 539 |
| NaeI | GCCGGC | 1 cut(s) | 222 |
| NarI | GGCGCC | 1 cut(s) | 224 |
| NciI | CCSGG | 3 cut(s) | 279, 290, 582 |
| NcoI | CCATGG | 1 cut(s) | 27 |
| NdeII | GATC | 4 cut(s) | 257, 274, 411, 487 |
| NgoMIV | GCCGGC | 1 cut(s) | 220 |
| NlaIII | CATG | 3 cut(s) | 31, 494, 633 |
| NlaIV | GGNNCC | 4 cut(s) | 225, 259, 276, 413 |
| NmeAIII | GCCGAG | 2 cut(s) | 128, 208 |
| NmuCI | GTSAC | 1 cut(s) | 240 |
| PaeR7I | CTCGAG | 2 cut(s) | 80, 477 |
| PagI | TCATGA | 1 cut(s) | 490 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 122, 224, 475 |
| PdiI | GCCGGC | 1 cut(s) | 222 |
| PfeI | GAWTC | 1 cut(s) | 613 |
| PfoI | TCCNGGA | 1 cut(s) | 277 |
| PkrI | GCNGC | 2 cut(s) | 314, 324 |
| PleI | GAGTC | 2 cut(s) | 121, 193 |
| PluTI | GGCGCC | 1 cut(s) | 227 |
| PpsI | GAGTC | 2 cut(s) | 121, 193 |
| PspN4I | GGNNCC | 4 cut(s) | 225, 259, 276, 413 |
| PspPI | GGNCC | 1 cut(s) | 34 |
| PsuI | RGATCY | 3 cut(s) | 257, 274, 411 |
| RseI | CAYNNNNRTG | 1 cut(s) | 443 |
| SatI | GCNGC | 2 cut(s) | 313, 323 |
| Sau3AI | GATC | 4 cut(s) | 257, 274, 411, 487 |
| Sau96I | GGNCC | 1 cut(s) | 34 |
| SchI | GAGTC | 2 cut(s) | 121, 194 |
| ScrFI | CCNGG | 3 cut(s) | 279, 290, 582 |
| SduI | GDGCHC | 1 cut(s) | 591 |
| SfaNI | GCATC | 1 cut(s) | 255 |
| SfoI | GGCGCC | 1 cut(s) | 225 |
| Sfr274I | CTCGAG | 2 cut(s) | 80, 477 |
| SgrAI | CRCCGGYG | 1 cut(s) | 220 |
| SlaI | CTCGAG | 2 cut(s) | 80, 477 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 443 |
| SmlI | CTYRAG | 3 cut(s) | 80, 155, 477 |
| SmoI | CTYRAG | 3 cut(s) | 80, 155, 477 |
| Sse9I | AATT | 1 cut(s) | 103 |
| SsiI | CCGC | 2 cut(s) | 133, 198 |
| SspDI | GGCGCC | 1 cut(s) | 223 |
| StyD4I | CCNGG | 3 cut(s) | 277, 288, 580 |
| StyI | CCWWGG | 1 cut(s) | 27 |
| TaaI | ACNGT | 1 cut(s) | 118 |
| TaiI | ACGT | 2 cut(s) | 180, 242 |
| TaqI | TCGA | 6 cut(s) | 81, 209, 469, 478, 537, 577 |
| TasI | AATT | 1 cut(s) | 103 |
| TfiI | GAWTC | 1 cut(s) | 613 |
| TseFI | GTSAC | 1 cut(s) | 240 |
| TseI | GCWGC | 2 cut(s) | 312, 322 |
| Tsp45I | GTSAC | 1 cut(s) | 240 |
| TspDTI | ATGAA | 4 cut(s) | 390, 461, 498, 507 |
| TspGWI | ACGGA | 1 cut(s) | 250 |
| VneI | GTGCAC | 1 cut(s) | 587 |
| XhoI | CTCGAG | 2 cut(s) | 80, 477 |
| XmiI | GTMKAC | 1 cut(s) | 12 |