Ribosomal protein-like protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Plant_tran | PF04827 | 54 - 150 | 1.1e-41 | Plant transposon protein |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 419 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 236 |
| AclWI | GGATC | 1 cut(s) | 387 |
| AcsI | RAATTY | 3 cut(s) | 277, 323, 585 |
| AgsI | TTSAA | 4 cut(s) | 77, 395, 440, 479 |
| AjnI | CCWGG | 1 cut(s) | 102 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 309, 341 |
| AluBI | AGCT | 2 cut(s) | 80, 290 |
| AluI | AGCT | 2 cut(s) | 80, 290 |
| Alw21I | GWGCWC | 2 cut(s) | 336, 636 |
| AlwI | GGATC | 1 cut(s) | 387 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 35 |
| ApoI | RAATTY | 3 cut(s) | 277, 323, 585 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 390 |
| AspS9I | GGNCC | 1 cut(s) | 362 |
| AsuHPI | GGTGA | 1 cut(s) | 71 |
| AvaII | GGWCC | 1 cut(s) | 362 |
| Bbv12I | GWGCWC | 2 cut(s) | 336, 636 |
| BciT130I | CCWGG | 1 cut(s) | 104 |
| BclI | TGATCA | 1 cut(s) | 175 |
| BfaI | CTAG | 2 cut(s) | 203, 626 |
| BglII | AGATCT | 1 cut(s) | 622 |
| Bme1390I | CCNGG | 1 cut(s) | 104 |
| Bme18I | GGWCC | 1 cut(s) | 362 |
| BmgT120I | GGNCC | 1 cut(s) | 362 |
| BmrFI | CCNGG | 1 cut(s) | 104 |
| BmsI | GCATC | 1 cut(s) | 22 |
| BpuEI | CTTGAG | 1 cut(s) | 276 |
| Bsa29I | ATCGAT | 1 cut(s) | 122 |
| Bse118I | RCCGGY | 1 cut(s) | 364 |
| Bse1I | ACTGG | 1 cut(s) | 139 |
| BseBI | CCWGG | 1 cut(s) | 104 |
| BseCI | ATCGAT | 1 cut(s) | 122 |
| BseGI | GGATG | 1 cut(s) | 305 |
| BseNI | ACTGG | 1 cut(s) | 139 |
| BshVI | ATCGAT | 1 cut(s) | 122 |
| BsiHKAI | GWGCWC | 2 cut(s) | 336, 636 |
| BsiSI | CCGG | 1 cut(s) | 365 |
| BslFI | GGGAC | 1 cut(s) | 242 |
| BsmFI | GGGAC | 1 cut(s) | 242 |
| BsmI | GAATGC | 1 cut(s) | 113 |
| Bsp1286I | GDGCHC | 2 cut(s) | 336, 636 |
| Bsp143I | GATC | 4 cut(s) | 175, 379, 472, 622 |
| BspDI | ATCGAT | 1 cut(s) | 122 |
| BspHI | TCATGA | 1 cut(s) | 178 |
| BspPI | GGATC | 1 cut(s) | 387 |
| BsrFI | RCCGGY | 1 cut(s) | 364 |
| BsrI | ACTGG | 1 cut(s) | 139 |
| BssAI | RCCGGY | 1 cut(s) | 364 |
| BssMI | GATC | 4 cut(s) | 175, 379, 472, 622 |
| Bst2UI | CCWGG | 1 cut(s) | 104 |
| Bst6I | CTCTTC | 1 cut(s) | 82 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 347 |
| BstDEI | CTNAG | 1 cut(s) | 112 |
| BstF5I | GGATG | 1 cut(s) | 305 |
| BstKTI | GATC | 4 cut(s) | 178, 382, 475, 625 |
| BstMBI | GATC | 4 cut(s) | 175, 379, 472, 622 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 77, 347, 640 |
| BstNI | CCWGG | 1 cut(s) | 104 |
| BstSCI | CCNGG | 1 cut(s) | 102 |
| BstX2I | RGATCY | 1 cut(s) | 622 |
| BstYI | RGATCY | 1 cut(s) | 622 |
| Bsu15I | ATCGAT | 1 cut(s) | 122 |
| BsuTUI | ATCGAT | 1 cut(s) | 122 |
| BtsCI | GGATG | 1 cut(s) | 305 |
| BtsI | GCAGTG | 1 cut(s) | 66 |
| BtsIMutI | CAGTG | 2 cut(s) | 66, 132 |
| CaiI | CAGNNNCTG | 1 cut(s) | 35 |
| CciI | TCATGA | 1 cut(s) | 178 |
| Cfr10I | RCCGGY | 1 cut(s) | 364 |
| Cfr13I | GGNCC | 1 cut(s) | 362 |
| ClaI | ATCGAT | 1 cut(s) | 122 |
| CseI | GACGC | 1 cut(s) | 239 |
| CviAII | CATG | 6 cut(s) | 161, 179, 225, 359, 430, 537 |
| CviJI | RGCY | 5 cut(s) | 80, 206, 290, 368, 656 |
| CviKI_1 | RGCY | 5 cut(s) | 80, 206, 290, 368, 656 |
| DdeI | CTNAG | 1 cut(s) | 112 |
| DpnI | GATC | 4 cut(s) | 177, 381, 474, 624 |
| DpnII | GATC | 4 cut(s) | 175, 379, 472, 622 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 236 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 236 |
| Eam1104I | CTCTTC | 1 cut(s) | 82 |
| EarI | CTCTTC | 1 cut(s) | 82 |
| Eco32I | GATATC | 1 cut(s) | 197 |
| Eco47I | GGWCC | 1 cut(s) | 362 |
| EcoRI | GAATTC | 1 cut(s) | 585 |
| EcoRII | CCWGG | 1 cut(s) | 102 |
| EcoRV | GATATC | 1 cut(s) | 197 |
| FaeI | CATG | 6 cut(s) | 164, 182, 228, 362, 433, 540 |
| FaqI | GGGAC | 1 cut(s) | 242 |
| FatI | CATG | 6 cut(s) | 160, 178, 224, 358, 429, 536 |
| FbaI | TGATCA | 1 cut(s) | 175 |
| FokI | GGATG | 1 cut(s) | 312 |
| FspBI | CTAG | 2 cut(s) | 203, 626 |
| HapII | CCGG | 1 cut(s) | 365 |
| HgaI | GACGC | 1 cut(s) | 239 |
| Hin1II | CATG | 6 cut(s) | 164, 182, 228, 362, 433, 540 |
| HinfI | GANTC | 2 cut(s) | 54, 90 |
| HpaII | CCGG | 1 cut(s) | 365 |
| HphI | GGTGA | 1 cut(s) | 71 |
| Hpy166II | GTNNAC | 2 cut(s) | 40, 257 |
| Hpy188I | TCNGA | 1 cut(s) | 306 |
| Hpy188III | TCNNGA | 5 cut(s) | 179, 293, 383, 476, 590 |
| Hpy8I | GTNNAC | 2 cut(s) | 40, 257 |
| HpyAV | CCTTC | 1 cut(s) | 231 |
| HpyCH4IV | ACGT | 2 cut(s) | 343, 646 |
| HpyCH4V | TGCA | 7 cut(s) | 71, 132, 160, 350, 424, 464, 488 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 77, 347, 640 |
| HpyF3I | CTNAG | 1 cut(s) | 112 |
| HpySE526I | ACGT | 2 cut(s) | 343, 646 |
| Hsp92II | CATG | 6 cut(s) | 164, 182, 228, 362, 433, 540 |
| Ksp22I | TGATCA | 1 cut(s) | 175 |
| Kzo9I | GATC | 4 cut(s) | 175, 379, 472, 622 |
| LmnI | GCTCC | 2 cut(s) | 339, 618 |
| LpnPI | CCDG | 7 cut(s) | 89, 116, 120, 139, 378, 515, 519 |
| LweI | GCATC | 1 cut(s) | 22 |
| MaeI | CTAG | 2 cut(s) | 203, 626 |
| MaeII | ACGT | 2 cut(s) | 343, 646 |
| MaeIII | GTNAC | 1 cut(s) | 647 |
| MalI | GATC | 4 cut(s) | 177, 381, 474, 624 |
| MboI | GATC | 4 cut(s) | 175, 379, 472, 622 |
| MboII | GAAGA | 3 cut(s) | 99, 156, 452 |
| MfeI | CAATTG | 2 cut(s) | 72, 351 |
| MflI | RGATCY | 1 cut(s) | 622 |
| MhlI | GDGCHC | 2 cut(s) | 336, 636 |
| MluCI | AATT | 8 cut(s) | 21, 72, 147, 277, 323, 351, 516, 585 |
| MlyI | GAGTC | 1 cut(s) | 99 |
| MmeI | TCCRAC | 1 cut(s) | 284 |
| MnlI | CCTC | 2 cut(s) | 289, 553 |
| MroXI | GAANNNNTTC | 1 cut(s) | 390 |
| MseI | TTAA | 1 cut(s) | 50 |
| MspI | CCGG | 1 cut(s) | 365 |
| MspR9I | CCNGG | 1 cut(s) | 104 |
| MunI | CAATTG | 2 cut(s) | 72, 351 |
| Mva1269I | GAATGC | 1 cut(s) | 113 |
| MvaI | CCWGG | 1 cut(s) | 104 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 77, 347, 640 |
| NdeII | GATC | 4 cut(s) | 175, 379, 472, 622 |
| NlaIII | CATG | 6 cut(s) | 164, 182, 228, 362, 433, 540 |
| NmuCI | GTSAC | 1 cut(s) | 647 |
| PagI | TCATGA | 1 cut(s) | 178 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 454 |
| PctI | GAATGC | 1 cut(s) | 113 |
| PdmI | GAANNNNTTC | 1 cut(s) | 390 |
| PfeI | GAWTC | 1 cut(s) | 54 |
| PfoI | TCCNGGA | 1 cut(s) | 102 |
| PleI | GAGTC | 1 cut(s) | 98 |
| PpsI | GAGTC | 1 cut(s) | 98 |
| PsiI | TTATAA | 1 cut(s) | 419 |
| Psp6I | CCWGG | 1 cut(s) | 102 |
| PspGI | CCWGG | 1 cut(s) | 102 |
| PspPI | GGNCC | 1 cut(s) | 362 |
| PstNI | CAGNNNCTG | 1 cut(s) | 35 |
| PsuI | RGATCY | 1 cut(s) | 622 |
| SaqAI | TTAA | 1 cut(s) | 50 |
| Sau3AI | GATC | 4 cut(s) | 175, 379, 472, 622 |
| Sau96I | GGNCC | 1 cut(s) | 362 |
| SchI | GAGTC | 1 cut(s) | 99 |
| ScrFI | CCNGG | 1 cut(s) | 104 |
| SduI | GDGCHC | 2 cut(s) | 336, 636 |
| SetI | ASST | 4 cut(s) | 82, 292, 346, 649 |
| SfaNI | GCATC | 1 cut(s) | 22 |
| SinI | GGWCC | 1 cut(s) | 362 |
| SmlI | CTYRAG | 1 cut(s) | 291 |
| SmoI | CTYRAG | 1 cut(s) | 291 |
| Sse9I | AATT | 8 cut(s) | 21, 72, 147, 277, 323, 351, 516, 585 |
| SspMI | CTAG | 2 cut(s) | 203, 626 |
| StyD4I | CCNGG | 1 cut(s) | 102 |
| TaiI | ACGT | 2 cut(s) | 346, 649 |
| TaqI | TCGA | 1 cut(s) | 122 |
| TasI | AATT | 8 cut(s) | 21, 72, 147, 277, 323, 351, 516, 585 |
| TfiI | GAWTC | 1 cut(s) | 54 |
| Tru1I | TTAA | 1 cut(s) | 50 |
| Tru9I | TTAA | 1 cut(s) | 50 |
| TscAI | CASTG | 2 cut(s) | 73, 139 |
| TseFI | GTSAC | 1 cut(s) | 647 |
| Tsp45I | GTSAC | 1 cut(s) | 647 |
| TspDTI | ATGAA | 7 cut(s) | 33, 195, 213, 347, 419, 459, 525 |
| TspRI | CASTG | 2 cut(s) | 73, 139 |
| VpaK11BI | GGWCC | 1 cut(s) | 362 |
| XapI | RAATTY | 3 cut(s) | 277, 323, 585 |
| XmnI | GAANNNNTTC | 1 cut(s) | 390 |
| XspI | CTAG | 2 cut(s) | 203, 626 |