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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 369 |
| AccIII | TCCGGA | 1 cut(s) | 126 |
| AclWI | GGATC | 2 cut(s) | 124, 137 |
| AcoI | YGGCCR | 1 cut(s) | 400 |
| AcyI | GRCGYC | 1 cut(s) | 326 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 363 |
| AgsI | TTSAA | 3 cut(s) | 162, 231, 254 |
| AjiI | CACGTC | 1 cut(s) | 397 |
| AlwI | GGATC | 2 cut(s) | 124, 137 |
| Ama87I | CYCGRG | 1 cut(s) | 195 |
| Aor13HI | TCCGGA | 1 cut(s) | 126 |
| AoxI | GGCC | 3 cut(s) | 263, 268, 400 |
| ApaI | GGGCCC | 1 cut(s) | 272 |
| ApeKI | GCWGC | 1 cut(s) | 71 |
| AspLEI | GCGC | 1 cut(s) | 369 |
| AspS9I | GGNCC | 3 cut(s) | 237, 268, 269 |
| AsuC2I | CCSGG | 1 cut(s) | 267 |
| AvaI | CYCGRG | 1 cut(s) | 195 |
| AvaII | GGWCC | 1 cut(s) | 237 |
| BaeGI | GKGCMC | 2 cut(s) | 223, 272 |
| BamHI | GGATCC | 1 cut(s) | 129 |
| BanII | GRGCYC | 1 cut(s) | 272 |
| BbvI | GCAGC | 1 cut(s) | 83 |
| BceAI | ACGGC | 1 cut(s) | 259 |
| BclI | TGATCA | 2 cut(s) | 30, 391 |
| BcnI | CCSGG | 1 cut(s) | 267 |
| BisI | GCNGC | 1 cut(s) | 72 |
| BlsI | GCNGC | 1 cut(s) | 73 |
| Bme1390I | CCNGG | 1 cut(s) | 267 |
| Bme18I | GGWCC | 1 cut(s) | 237 |
| BmeT110I | CYCGRG | 1 cut(s) | 195 |
| BmgBI | CACGTC | 1 cut(s) | 397 |
| BmgT120I | GGNCC | 3 cut(s) | 237, 268, 269 |
| BmiI | GGNNCC | 3 cut(s) | 131, 270, 271 |
| BmrFI | CCNGG | 1 cut(s) | 267 |
| BpuMI | CCSGG | 1 cut(s) | 267 |
| BsaBI | GATNNNNATC | 2 cut(s) | 204, 390 |
| BsaHI | GRCGYC | 1 cut(s) | 326 |
| BsaJI | CCNNGG | 1 cut(s) | 362 |
| BsaWI | WCCGGW | 1 cut(s) | 126 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 363 |
| Bse8I | GATNNNNATC | 2 cut(s) | 204, 390 |
| BseAI | TCCGGA | 1 cut(s) | 126 |
| BseDI | CCNNGG | 1 cut(s) | 362 |
| BseJI | GATNNNNATC | 2 cut(s) | 204, 390 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 363 |
| BseSI | GKGCMC | 2 cut(s) | 223, 272 |
| BseXI | GCAGC | 1 cut(s) | 83 |
| Bsh1236I | CGCG | 1 cut(s) | 369 |
| BshFI | GGCC | 3 cut(s) | 265, 270, 402 |
| BsiHKCI | CYCGRG | 1 cut(s) | 195 |
| BsiSI | CCGG | 2 cut(s) | 127, 266 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 363 |
| BsnI | GGCC | 3 cut(s) | 265, 270, 402 |
| BsoBI | CYCGRG | 1 cut(s) | 195 |
| Bsp120I | GGGCCC | 1 cut(s) | 268 |
| Bsp1286I | GDGCHC | 2 cut(s) | 223, 272 |
| Bsp13I | TCCGGA | 1 cut(s) | 126 |
| Bsp143I | GATC | 4 cut(s) | 30, 129, 205, 391 |
| BspANI | GGCC | 3 cut(s) | 265, 270, 402 |
| BspEI | TCCGGA | 1 cut(s) | 126 |
| BspFNI | CGCG | 1 cut(s) | 369 |
| BspHI | TCATGA | 1 cut(s) | 208 |
| BspLI | GGNNCC | 3 cut(s) | 131, 270, 271 |
| BspPI | GGATC | 2 cut(s) | 124, 137 |
| BspQI | GCTCTTC | 1 cut(s) | 207 |
| BssECI | CCNNGG | 1 cut(s) | 362 |
| BssMI | GATC | 4 cut(s) | 30, 129, 205, 391 |
| BssNI | GRCGYC | 1 cut(s) | 326 |
| BssT1I | CCWWGG | 1 cut(s) | 362 |
| Bst6I | CTCTTC | 2 cut(s) | 161, 207 |
| BstACI | GRCGYC | 1 cut(s) | 326 |
| BstC8I | GCNNGC | 2 cut(s) | 219, 263 |
| BstDEI | CTNAG | 1 cut(s) | 180 |
| BstFNI | CGCG | 1 cut(s) | 369 |
| BstHHI | GCGC | 1 cut(s) | 369 |
| BstKTI | GATC | 4 cut(s) | 33, 132, 208, 394 |
| BstMBI | GATC | 4 cut(s) | 30, 129, 205, 391 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 267 |
| BstSCI | CCNGG | 1 cut(s) | 265 |
| BstSLI | GKGCMC | 2 cut(s) | 223, 272 |
| BstUI | CGCG | 1 cut(s) | 369 |
| BstV1I | GCAGC | 1 cut(s) | 83 |
| BstX2I | RGATCY | 1 cut(s) | 129 |
| BstYI | RGATCY | 1 cut(s) | 129 |
| BsuRI | GGCC | 3 cut(s) | 265, 270, 402 |
| BtrI | CACGTC | 1 cut(s) | 397 |
| Cac8I | GCNNGC | 2 cut(s) | 219, 263 |
| CciI | TCATGA | 1 cut(s) | 208 |
| CfoI | GCGC | 1 cut(s) | 369 |
| Cfr13I | GGNCC | 3 cut(s) | 237, 268, 269 |
| CseI | GACGC | 3 cut(s) | 315, 322, 358 |
| CviAII | CATG | 2 cut(s) | 209, 330 |
| CviJI | RGCY | 6 cut(s) | 92, 179, 246, 265, 270, 402 |
| CviKI_1 | RGCY | 6 cut(s) | 92, 179, 246, 265, 270, 402 |
| DdeI | CTNAG | 1 cut(s) | 180 |
| DpnI | GATC | 4 cut(s) | 32, 131, 207, 393 |
| DpnII | GATC | 4 cut(s) | 30, 129, 205, 391 |
| EaeI | YGGCCR | 1 cut(s) | 400 |
| Eam1104I | CTCTTC | 2 cut(s) | 161, 207 |
| EarI | CTCTTC | 2 cut(s) | 161, 207 |
| Eco130I | CCWWGG | 1 cut(s) | 362 |
| Eco24I | GRGCYC | 1 cut(s) | 272 |
| Eco47I | GGWCC | 1 cut(s) | 237 |
| Eco88I | CYCGRG | 1 cut(s) | 195 |
| EcoO109I | RGGNCCY | 1 cut(s) | 269 |
| EcoT14I | CCWWGG | 1 cut(s) | 362 |
| EcoT38I | GRGCYC | 1 cut(s) | 272 |
| ErhI | CCWWGG | 1 cut(s) | 362 |
| FaeI | CATG | 2 cut(s) | 212, 333 |
| FaiI | YATR | 7 cut(s) | 29, 42, 59, 121, 210, 288, 331 |
| FatI | CATG | 2 cut(s) | 208, 329 |
| FbaI | TGATCA | 2 cut(s) | 30, 391 |
| Fnu4HI | GCNGC | 1 cut(s) | 72 |
| FriOI | GRGCYC | 1 cut(s) | 272 |
| Fsp4HI | GCNGC | 1 cut(s) | 72 |
| GlaI | GCGC | 1 cut(s) | 368 |
| GluI | GCNGC | 1 cut(s) | 72 |
| HaeIII | GGCC | 3 cut(s) | 265, 270, 402 |
| HapII | CCGG | 2 cut(s) | 127, 266 |
| HgaI | GACGC | 3 cut(s) | 315, 322, 358 |
| HhaI | GCGC | 1 cut(s) | 369 |
| Hin1I | GRCGYC | 1 cut(s) | 326 |
| Hin1II | CATG | 2 cut(s) | 212, 333 |
| Hin6I | GCGC | 1 cut(s) | 367 |
| HinP1I | GCGC | 1 cut(s) | 367 |
| HincII | GTYRAC | 1 cut(s) | 340 |
| HindII | GTYRAC | 1 cut(s) | 340 |
| HpaII | CCGG | 2 cut(s) | 127, 266 |
| Hpy166II | GTNNAC | 3 cut(s) | 55, 340, 351 |
| Hpy188III | TCNNGA | 4 cut(s) | 127, 195, 197, 209 |
| Hpy8I | GTNNAC | 3 cut(s) | 55, 340, 351 |
| Hpy99I | CGWCG | 4 cut(s) | 338, 374, 377, 401 |
| HpyAV | CCTTC | 2 cut(s) | 120, 159 |
| HpyCH4IV | ACGT | 2 cut(s) | 35, 396 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 267 |
| HpyF3I | CTNAG | 1 cut(s) | 180 |
| HpySE526I | ACGT | 2 cut(s) | 35, 396 |
| Hsp92I | GRCGYC | 1 cut(s) | 326 |
| Hsp92II | CATG | 2 cut(s) | 212, 333 |
| HspAI | GCGC | 1 cut(s) | 367 |
| Kpn2I | TCCGGA | 1 cut(s) | 126 |
| Ksp22I | TGATCA | 2 cut(s) | 30, 391 |
| Kzo9I | GATC | 4 cut(s) | 30, 129, 205, 391 |
| LguI | GCTCTTC | 1 cut(s) | 207 |
| LpnPI | CCDG | 5 cut(s) | 140, 236, 247, 279, 356 |
| Lsp1109I | GCAGC | 1 cut(s) | 83 |
| MaeII | ACGT | 2 cut(s) | 35, 396 |
| MalI | GATC | 4 cut(s) | 32, 131, 207, 393 |
| MboI | GATC | 4 cut(s) | 30, 129, 205, 391 |
| MboII | GAAGA | 4 cut(s) | 178, 215, 224, 242 |
| MflI | RGATCY | 1 cut(s) | 129 |
| MhlI | GDGCHC | 2 cut(s) | 223, 272 |
| MluCI | AATT | 1 cut(s) | 48 |
| MmeI | TCCRAC | 1 cut(s) | 157 |
| MnlI | CCTC | 8 cut(s) | 30, 61, 94, 154, 164, 283, 316, 368 |
| MroI | TCCGGA | 1 cut(s) | 126 |
| MslI | CAYNNNNRTG | 1 cut(s) | 161 |
| MspI | CCGG | 2 cut(s) | 127, 266 |
| MspR9I | CCNGG | 1 cut(s) | 267 |
| MvnI | CGCG | 1 cut(s) | 369 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 267 |
| NciI | CCSGG | 1 cut(s) | 267 |
| NdeII | GATC | 4 cut(s) | 30, 129, 205, 391 |
| NlaIII | CATG | 2 cut(s) | 212, 333 |
| NlaIV | GGNNCC | 3 cut(s) | 131, 270, 271 |
| NmeAIII | GCCGAG | 1 cut(s) | 407 |
| PaeR7I | CTCGAG | 1 cut(s) | 195 |
| PagI | TCATGA | 1 cut(s) | 208 |
| PciSI | GCTCTTC | 1 cut(s) | 207 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 193, 402 |
| PkrI | GCNGC | 1 cut(s) | 73 |
| PspN4I | GGNNCC | 3 cut(s) | 131, 270, 271 |
| PspOMI | GGGCCC | 1 cut(s) | 268 |
| PspPI | GGNCC | 3 cut(s) | 237, 268, 269 |
| PsuI | RGATCY | 1 cut(s) | 129 |
| RseI | CAYNNNNRTG | 1 cut(s) | 161 |
| SapI | GCTCTTC | 1 cut(s) | 207 |
| SatI | GCNGC | 1 cut(s) | 72 |
| Sau3AI | GATC | 4 cut(s) | 30, 129, 205, 391 |
| Sau96I | GGNCC | 3 cut(s) | 237, 268, 269 |
| ScrFI | CCNGG | 1 cut(s) | 267 |
| SduI | GDGCHC | 2 cut(s) | 223, 272 |
| SetI | ASST | 3 cut(s) | 38, 345, 399 |
| Sfr274I | CTCGAG | 1 cut(s) | 195 |
| SinI | GGWCC | 1 cut(s) | 237 |
| SlaI | CTCGAG | 1 cut(s) | 195 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 161 |
| SmlI | CTYRAG | 1 cut(s) | 195 |
| SmoI | CTYRAG | 1 cut(s) | 195 |
| Sse9I | AATT | 1 cut(s) | 48 |
| StyD4I | CCNGG | 1 cut(s) | 265 |
| StyI | CCWWGG | 1 cut(s) | 362 |
| TaiI | ACGT | 2 cut(s) | 38, 399 |
| TaqI | TCGA | 4 cut(s) | 5, 22, 187, 196 |
| TasI | AATT | 1 cut(s) | 48 |
| TseI | GCWGC | 1 cut(s) | 71 |
| TspDTI | ATGAA | 4 cut(s) | 108, 179, 216, 225 |
| VpaK11BI | GGWCC | 1 cut(s) | 237 |
| XhoI | CTCGAG | 1 cut(s) | 195 |