Plant transposon protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1027 |
| AccB1I | GGYRCC | 1 cut(s) | 1151 |
| AccBSI | CCGCTC | 2 cut(s) | 160, 402 |
| AccI | GTMKAC | 2 cut(s) | 1045, 1061 |
| AccII | CGCG | 1 cut(s) | 432 |
| AccIII | TCCGGA | 1 cut(s) | 237 |
| AciI | CCGC | 5 cut(s) | 160, 402, 410, 419, 452 |
| AclI | AACGTT | 1 cut(s) | 1926 |
| AclWI | GGATC | 6 cut(s) | 500, 799, 1494, 1605, 1860, 1911 |
| AcoI | YGGCCR | 1 cut(s) | 1278 |
| AcsI | RAATTY | 3 cut(s) | 533, 610, 1844 |
| AcuI | CTGAAG | 3 cut(s) | 114, 120, 1622 |
| AcyI | GRCGYC | 1 cut(s) | 446 |
| AfaI | GTAC | 4 cut(s) | 61, 248, 1247, 1523 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 625, 672, 1056, 1782, 1783, 1900 |
| AflII | CTTAAG | 1 cut(s) | 1132 |
| AflIII | ACRYGT | 2 cut(s) | 1124, 1410 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 994 |
| AjnI | CCWGG | 5 cut(s) | 1324, 1482, 1611, 1766, 1776 |
| AleI | CACNNNNGTG | 1 cut(s) | 922 |
| Alw21I | GWGCWC | 1 cut(s) | 148 |
| Alw26I | GTCTC | 2 cut(s) | 455, 714 |
| Alw44I | GTGCAC | 1 cut(s) | 144 |
| AlwI | GGATC | 6 cut(s) | 500, 799, 1494, 1605, 1860, 1911 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 92, 1085, 1120, 1213 |
| Ama87I | CYCGRG | 2 cut(s) | 33, 368 |
| Aor13HI | TCCGGA | 1 cut(s) | 237 |
| AoxI | GGCC | 6 cut(s) | 371, 646, 1278, 1580, 1763, 1773 |
| ApaLI | GTGCAC | 1 cut(s) | 144 |
| ApeKI | GCWGC | 4 cut(s) | 83, 1034, 1085, 1629 |
| ApoI | RAATTY | 3 cut(s) | 533, 610, 1844 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 882, 1654 |
| AspLEI | GCGC | 1 cut(s) | 1160 |
| AspS9I | GGNCC | 5 cut(s) | 371, 1012, 1069, 1764, 1774 |
| AsuC2I | CCSGG | 2 cut(s) | 138, 1265 |
| AsuHPI | GGTGA | 5 cut(s) | 251, 452, 698, 1291, 1811 |
| AsuII | TTCGAA | 1 cut(s) | 636 |
| AvaI | CYCGRG | 2 cut(s) | 33, 368 |
| AvaII | GGWCC | 2 cut(s) | 1012, 1069 |
| BaeGI | GKGCMC | 2 cut(s) | 148, 1418 |
| BanI | GGYRCC | 1 cut(s) | 1151 |
| BanII | GRGCYC | 2 cut(s) | 573, 1270 |
| BauI | CACGAG | 1 cut(s) | 1633 |
| BbsI | GAAGAC | 3 cut(s) | 201, 1297, 1657 |
| Bbv12I | GWGCWC | 1 cut(s) | 148 |
| BbvI | GCAGC | 4 cut(s) | 95, 1021, 1072, 1616 |
| BccI | CCATC | 8 cut(s) | 184, 345, 470, 688, 836, 1023, 1180, 1529 |
| BceAI | ACGGC | 1 cut(s) | 1385 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1675, 1709 |
| BciT130I | CCWGG | 5 cut(s) | 1326, 1484, 1613, 1768, 1778 |
| BcnI | CCSGG | 2 cut(s) | 138, 1265 |
| BcoDI | GTCTC | 2 cut(s) | 455, 714 |
| BfaI | CTAG | 2 cut(s) | 423, 1948 |
| BfmI | CTRYAG | 4 cut(s) | 267, 705, 957, 1086 |
| BfrI | CTTAAG | 1 cut(s) | 1132 |
| BglII | AGATCT | 3 cut(s) | 43, 1003, 1944 |
| BisI | GCNGC | 5 cut(s) | 84, 420, 1035, 1086, 1630 |
| BlsI | GCNGC | 5 cut(s) | 85, 421, 1036, 1087, 1631 |
| Bme1390I | CCNGG | 7 cut(s) | 138, 1265, 1326, 1484, 1613, 1768, 1778 |
| Bme18I | GGWCC | 2 cut(s) | 1012, 1069 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 994 |
| BmeT110I | CYCGRG | 2 cut(s) | 33, 368 |
| BmgT120I | GGNCC | 5 cut(s) | 371, 1012, 1069, 1764, 1774 |
| BmiI | GGNNCC | 4 cut(s) | 570, 677, 1153, 1269 |
| BmrFI | CCNGG | 7 cut(s) | 138, 1265, 1326, 1484, 1613, 1768, 1778 |
| BmsI | GCATC | 4 cut(s) | 861, 1072, 1350, 1852 |
| BpiI | GAAGAC | 3 cut(s) | 201, 1297, 1657 |
| BpmI | CTGGAG | 2 cut(s) | 94, 1409 |
| Bpu14I | TTCGAA | 1 cut(s) | 636 |
| BpuEI | CTTGAG | 1 cut(s) | 1602 |
| BpuMI | CCSGG | 2 cut(s) | 138, 1265 |
| Bsa29I | ATCGAT | 1 cut(s) | 1855 |
| BsaBI | GATNNNNATC | 1 cut(s) | 42 |
| BsaHI | GRCGYC | 1 cut(s) | 446 |
| BsaWI | WCCGGW | 1 cut(s) | 237 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 625, 672, 1056, 1782, 1783, 1900 |
| Bse118I | RCCGGY | 2 cut(s) | 1009, 1154 |
| Bse1I | ACTGG | 3 cut(s) | 215, 1361, 1801 |
| Bse3DI | GCAATG | 2 cut(s) | 1367, 1556 |
| Bse8I | GATNNNNATC | 1 cut(s) | 42 |
| BseAI | TCCGGA | 1 cut(s) | 237 |
| BseBI | CCWGG | 5 cut(s) | 1326, 1484, 1613, 1768, 1778 |
| BseCI | ATCGAT | 1 cut(s) | 1855 |
| BseGI | GGATG | 8 cut(s) | 258, 481, 823, 835, 1191, 1335, 1424, 1705 |
| BseJI | GATNNNNATC | 1 cut(s) | 42 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 625, 672, 1056, 1782, 1783, 1900 |
| BseMI | GCAATG | 2 cut(s) | 1367, 1556 |
| BseMII | CTCAG | 4 cut(s) | 816, 1164, 1299, 1300 |
| BseNI | ACTGG | 3 cut(s) | 215, 1361, 1801 |
| BseRI | GAGGAG | 2 cut(s) | 170, 560 |
| BseSI | GKGCMC | 2 cut(s) | 148, 1418 |
| BseX3I | CGGCCG | 1 cut(s) | 1278 |
| BseXI | GCAGC | 4 cut(s) | 95, 1021, 1072, 1616 |
| BseYI | CCCAGC | 3 cut(s) | 572, 1110, 1639 |
| Bsh1236I | CGCG | 1 cut(s) | 432 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1281 |
| BshFI | GGCC | 6 cut(s) | 373, 648, 1280, 1582, 1765, 1775 |
| BshNI | GGYRCC | 1 cut(s) | 1151 |
| BshVI | ATCGAT | 1 cut(s) | 1855 |
| BsiEI | CGRYCG | 1 cut(s) | 1281 |
| BsiHKAI | GWGCWC | 1 cut(s) | 148 |
| BsiHKCI | CYCGRG | 2 cut(s) | 33, 368 |
| BsiSI | CCGG | 6 cut(s) | 137, 238, 1010, 1155, 1264, 1277 |
| BslFI | GGGAC | 3 cut(s) | 523, 602, 941 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 625, 672, 1056, 1782, 1783, 1900 |
| BsmAI | GTCTC | 2 cut(s) | 455, 714 |
| BsmBI | CGTCTC | 1 cut(s) | 455 |
| BsmFI | GGGAC | 3 cut(s) | 523, 602, 941 |
| BsmI | GAATGC | 3 cut(s) | 591, 1143, 1320 |
| BsnI | GGCC | 6 cut(s) | 373, 648, 1280, 1582, 1765, 1775 |
| BsoBI | CYCGRG | 2 cut(s) | 33, 368 |
| Bsp119I | TTCGAA | 1 cut(s) | 636 |
| Bsp1286I | GDGCHC | 4 cut(s) | 148, 573, 1270, 1418 |
| Bsp13I | TCCGGA | 1 cut(s) | 237 |
| Bsp19I | CCATGG | 1 cut(s) | 971 |
| BspACI | CCGC | 5 cut(s) | 160, 402, 410, 419, 452 |
| BspANI | GGCC | 6 cut(s) | 373, 648, 1280, 1582, 1765, 1775 |
| BspCNI | CTCAG | 4 cut(s) | 817, 1165, 1299, 1300 |
| BspDI | ATCGAT | 1 cut(s) | 1855 |
| BspEI | TCCGGA | 1 cut(s) | 237 |
| BspFNI | CGCG | 1 cut(s) | 432 |
| BspLI | GGNNCC | 4 cut(s) | 570, 677, 1153, 1269 |
| BspMAI | CTGCAG | 1 cut(s) | 1090 |
| BspPI | GGATC | 6 cut(s) | 500, 799, 1494, 1605, 1860, 1911 |
| BspQI | GCTCTTC | 2 cut(s) | 45, 392 |
| BspT104I | TTCGAA | 1 cut(s) | 636 |
| BspT107I | GGYRCC | 1 cut(s) | 1151 |
| BspTI | CTTAAG | 1 cut(s) | 1132 |
| BsrBI | CCGCTC | 2 cut(s) | 160, 402 |
| BsrDI | GCAATG | 2 cut(s) | 1367, 1556 |
| BsrFI | RCCGGY | 2 cut(s) | 1009, 1154 |
| BsrI | ACTGG | 3 cut(s) | 215, 1361, 1801 |
| BssAI | RCCGGY | 2 cut(s) | 1009, 1154 |
| BssNAI | GTATAC | 1 cut(s) | 1062 |
| BssNI | GRCGYC | 1 cut(s) | 446 |
| BssSI | CACGAG | 1 cut(s) | 1633 |
| BssT1I | CCWWGG | 3 cut(s) | 971, 1577, 1593 |
| Bst1107I | GTATAC | 1 cut(s) | 1062 |
| Bst2BI | CACGAG | 1 cut(s) | 1633 |
| Bst2UI | CCWGG | 5 cut(s) | 1326, 1484, 1613, 1768, 1778 |
| Bst4CI | ACNGT | 4 cut(s) | 715, 1043, 1069, 1883 |
| Bst6I | CTCTTC | 7 cut(s) | 45, 347, 392, 429, 684, 781, 1740 |
| BstACI | GRCGYC | 1 cut(s) | 446 |
| BstAFI | CTTAAG | 1 cut(s) | 1132 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1347 |
| BstBI | TTCGAA | 1 cut(s) | 636 |
| BstC8I | GCNNGC | 8 cut(s) | 144, 404, 408, 1090, 1143, 1156, 1352, 1466 |
| BstDEI | CTNAG | 6 cut(s) | 18, 597, 825, 1173, 1286, 1308 |
| BstDSI | CCRYGG | 3 cut(s) | 317, 853, 971 |
| BstF5I | GGATG | 8 cut(s) | 258, 481, 823, 835, 1191, 1335, 1424, 1705 |
| BstFNI | CGCG | 1 cut(s) | 432 |
| BstHHI | GCGC | 1 cut(s) | 1160 |
| BstMAI | GTCTC | 2 cut(s) | 455, 714 |
| BstMCI | CGRYCG | 1 cut(s) | 1281 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 89, 416, 1151, 1347 |
| BstNI | CCWGG | 5 cut(s) | 1326, 1484, 1613, 1768, 1778 |
| BstNSI | RCATGY | 3 cut(s) | 1128, 1354, 1468 |
| BstSCI | CCNGG | 7 cut(s) | 136, 1263, 1324, 1482, 1611, 1766, 1776 |
| BstSFI | CTRYAG | 4 cut(s) | 267, 705, 957, 1086 |
| BstSLI | GKGCMC | 2 cut(s) | 148, 1418 |
| BstUI | CGCG | 1 cut(s) | 432 |
| BstV1I | GCAGC | 4 cut(s) | 95, 1021, 1072, 1616 |
| BstV2I | GAAGAC | 3 cut(s) | 201, 1297, 1657 |
| BstX2I | RGATCY | 5 cut(s) | 43, 1003, 1597, 1903, 1944 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1382 |
| BstYI | RGATCY | 5 cut(s) | 43, 1003, 1597, 1903, 1944 |
| BstZ17I | GTATAC | 1 cut(s) | 1062 |
| BstZI | CGGCCG | 1 cut(s) | 1278 |
| Bsu15I | ATCGAT | 1 cut(s) | 1855 |
| BsuRI | GGCC | 6 cut(s) | 373, 648, 1280, 1582, 1765, 1775 |
| BsuTUI | ATCGAT | 1 cut(s) | 1855 |
| BtgI | CCRYGG | 3 cut(s) | 317, 853, 971 |
| BtgZI | GCGATG | 1 cut(s) | 1734 |
| BtsCI | GGATG | 8 cut(s) | 258, 481, 823, 835, 1191, 1335, 1424, 1705 |
| BtsIMutI | CAGTG | 1 cut(s) | 1354 |
| Cac8I | GCNNGC | 8 cut(s) | 144, 404, 408, 1090, 1143, 1156, 1352, 1466 |
| CaiI | CAGNNNCTG | 4 cut(s) | 92, 1085, 1120, 1213 |
| CfoI | GCGC | 1 cut(s) | 1160 |
| Cfr10I | RCCGGY | 2 cut(s) | 1009, 1154 |
| Cfr13I | GGNCC | 5 cut(s) | 371, 1012, 1069, 1764, 1774 |
| ClaI | ATCGAT | 1 cut(s) | 1855 |
| CseI | GACGC | 3 cut(s) | 200, 310, 435 |
| Csp6I | GTAC | 4 cut(s) | 60, 247, 1246, 1522 |
| CviQI | GTAC | 4 cut(s) | 60, 247, 1246, 1522 |
| DdeI | CTNAG | 6 cut(s) | 18, 597, 825, 1173, 1286, 1308 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1027 |
| DriI | GACNNNNNGTC | 1 cut(s) | 994 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1027 |
| EaeI | YGGCCR | 1 cut(s) | 1278 |
| EagI | CGGCCG | 1 cut(s) | 1278 |
| Eam1104I | CTCTTC | 7 cut(s) | 45, 347, 392, 429, 684, 781, 1740 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 994 |
| EarI | CTCTTC | 7 cut(s) | 45, 347, 392, 429, 684, 781, 1740 |
| EciI | GGCGGA | 1 cut(s) | 467 |
| EclXI | CGGCCG | 1 cut(s) | 1278 |
| Eco130I | CCWWGG | 3 cut(s) | 971, 1577, 1593 |
| Eco147I | AGGCCT | 1 cut(s) | 1582 |
| Eco24I | GRGCYC | 2 cut(s) | 573, 1270 |
| Eco32I | GATATC | 1 cut(s) | 808 |
| Eco47I | GGWCC | 2 cut(s) | 1012, 1069 |
| Eco52I | CGGCCG | 1 cut(s) | 1278 |
| Eco57I | CTGAAG | 3 cut(s) | 114, 120, 1622 |
| Eco88I | CYCGRG | 2 cut(s) | 33, 368 |
| EcoRI | GAATTC | 1 cut(s) | 1844 |
| EcoRII | CCWGG | 5 cut(s) | 1324, 1482, 1611, 1766, 1776 |
| EcoRV | GATATC | 1 cut(s) | 808 |
| EcoT14I | CCWWGG | 3 cut(s) | 971, 1577, 1593 |
| EcoT22I | ATGCAT | 1 cut(s) | 591 |
| EcoT38I | GRGCYC | 2 cut(s) | 573, 1270 |
| ErhI | CCWWGG | 3 cut(s) | 971, 1577, 1593 |
| Esp3I | CGTCTC | 1 cut(s) | 455 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 719, 751 |
| FaqI | GGGAC | 3 cut(s) | 523, 602, 941 |
| FauI | CCCGC | 1 cut(s) | 395 |
| FauNDI | CATATG | 1 cut(s) | 591 |
| FblI | GTMKAC | 2 cut(s) | 1045, 1061 |
| Fnu4HI | GCNGC | 5 cut(s) | 84, 420, 1035, 1086, 1630 |
| FokI | GGATG | 8 cut(s) | 265, 488, 830, 842, 1198, 1342, 1411, 1712 |
| FriOI | GRGCYC | 2 cut(s) | 573, 1270 |
| Fsp4HI | GCNGC | 5 cut(s) | 84, 420, 1035, 1086, 1630 |
| FspBI | CTAG | 2 cut(s) | 423, 1948 |
| GlaI | GCGC | 1 cut(s) | 1159 |
| GluI | GCNGC | 5 cut(s) | 84, 420, 1035, 1086, 1630 |
| GsaI | CCCAGC | 3 cut(s) | 576, 1114, 1643 |
| GsuI | CTGGAG | 2 cut(s) | 94, 1409 |
| HaeIII | GGCC | 6 cut(s) | 373, 648, 1280, 1582, 1765, 1775 |
| HapII | CCGG | 6 cut(s) | 137, 238, 1010, 1155, 1264, 1277 |
| HgaI | GACGC | 3 cut(s) | 200, 310, 435 |
| HhaI | GCGC | 1 cut(s) | 1160 |
| Hin1I | GRCGYC | 1 cut(s) | 446 |
| Hin6I | GCGC | 1 cut(s) | 1158 |
| HinP1I | GCGC | 1 cut(s) | 1158 |
| HincII | GTYRAC | 2 cut(s) | 779, 988 |
| HindII | GTYRAC | 2 cut(s) | 779, 988 |
| HindIII | AAGCTT | 2 cut(s) | 102, 893 |
| HinfI | GANTC | 7 cut(s) | 170, 256, 278, 821, 1028, 1507, 1733 |
| HpaII | CCGG | 6 cut(s) | 137, 238, 1010, 1155, 1264, 1277 |
| HphI | GGTGA | 5 cut(s) | 251, 452, 698, 1291, 1811 |
| Hpy166II | GTNNAC | 7 cut(s) | 60, 146, 428, 779, 988, 1046, 1062 |
| Hpy8I | GTNNAC | 7 cut(s) | 60, 146, 428, 779, 988, 1046, 1062 |
| Hpy99I | CGWCG | 7 cut(s) | 123, 126, 304, 451, 1027, 1069, 1406 |
| HpyAV | CCTTC | 6 cut(s) | 500, 1308, 1479, 1665, 1781, 1904 |
| HpyCH4III | ACNGT | 4 cut(s) | 715, 1043, 1069, 1883 |
| HpyCH4IV | ACGT | 3 cut(s) | 378, 1410, 1926 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 89, 416, 1151, 1347 |
| HpyF3I | CTNAG | 6 cut(s) | 18, 597, 825, 1173, 1286, 1308 |
| HpySE526I | ACGT | 3 cut(s) | 378, 1410, 1926 |
| Hsp92I | GRCGYC | 1 cut(s) | 446 |
| HspAI | GCGC | 1 cut(s) | 1158 |
| Kpn2I | TCCGGA | 1 cut(s) | 237 |
| KroI | GCCGGC | 1 cut(s) | 1154 |
| KroNI | GCCGGC | 1 cut(s) | 1156 |
| LguI | GCTCTTC | 2 cut(s) | 45, 392 |
| LmnI | GCTCC | 8 cut(s) | 157, 208, 466, 516, 568, 943, 1273, 1626 |
| Lsp1109I | GCAGC | 4 cut(s) | 95, 1021, 1072, 1616 |
| LweI | GCATC | 4 cut(s) | 861, 1072, 1350, 1852 |
| MaeI | CTAG | 2 cut(s) | 423, 1948 |
| MaeII | ACGT | 3 cut(s) | 378, 1410, 1926 |
| MaeIII | GTNAC | 5 cut(s) | 257, 379, 709, 964, 1883 |
| MbiI | CCGCTC | 2 cut(s) | 160, 402 |
| MflI | RGATCY | 5 cut(s) | 43, 1003, 1597, 1903, 1944 |
| MhlI | GDGCHC | 4 cut(s) | 148, 573, 1270, 1418 |
| MlyI | GAGTC | 4 cut(s) | 265, 830, 1037, 1742 |
| MmeI | TCCRAC | 2 cut(s) | 1078, 1163 |
| Mph1103I | ATGCAT | 1 cut(s) | 591 |
| MroI | TCCGGA | 1 cut(s) | 237 |
| MroNI | GCCGGC | 1 cut(s) | 1154 |
| MroXI | GAANNNNTTC | 2 cut(s) | 882, 1654 |
| MseI | TTAA | 4 cut(s) | 759, 909, 1133, 1239 |
| MslI | CAYNNNNRTG | 2 cut(s) | 922, 1458 |
| MspA1I | CMGCKG | 1 cut(s) | 1034 |
| MspCI | CTTAAG | 1 cut(s) | 1132 |
| MspI | CCGG | 6 cut(s) | 137, 238, 1010, 1155, 1264, 1277 |
| MspR9I | CCNGG | 7 cut(s) | 138, 1265, 1326, 1484, 1613, 1768, 1778 |
| Mva1269I | GAATGC | 3 cut(s) | 591, 1143, 1320 |
| MvaI | CCWGG | 5 cut(s) | 1326, 1484, 1613, 1768, 1778 |
| MvnI | CGCG | 1 cut(s) | 432 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 89, 416, 1151, 1347 |
| NaeI | GCCGGC | 1 cut(s) | 1156 |
| NciI | CCSGG | 2 cut(s) | 138, 1265 |
| NcoI | CCATGG | 1 cut(s) | 971 |
| NdeI | CATATG | 1 cut(s) | 591 |
| NgoMIV | GCCGGC | 1 cut(s) | 1154 |
| NlaIV | GGNNCC | 4 cut(s) | 570, 677, 1153, 1269 |
| NmeAIII | GCCGAG | 1 cut(s) | 1229 |
| NmuCI | GTSAC | 3 cut(s) | 257, 964, 1883 |
| NsiI | ATGCAT | 1 cut(s) | 591 |
| NspI | RCATGY | 3 cut(s) | 1128, 1354, 1468 |
| NspV | TTCGAA | 1 cut(s) | 636 |
| OliI | CACNNNNGTG | 1 cut(s) | 922 |
| PaeI | GCATGC | 2 cut(s) | 1354, 1468 |
| PaeR7I | CTCGAG | 1 cut(s) | 33 |
| PceI | AGGCCT | 1 cut(s) | 1582 |
| PciI | ACATGT | 1 cut(s) | 1124 |
| PciSI | GCTCTTC | 2 cut(s) | 45, 392 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 31, 375, 1502 |
| PctI | GAATGC | 3 cut(s) | 591, 1143, 1320 |
| PdiI | GCCGGC | 1 cut(s) | 1156 |
| PdmI | GAANNNNTTC | 2 cut(s) | 882, 1654 |
| PfeI | GAWTC | 3 cut(s) | 170, 278, 1507 |
| PflFI | GACNNNGTC | 1 cut(s) | 1027 |
| PkrI | GCNGC | 5 cut(s) | 85, 421, 1036, 1087, 1631 |
| PleI | GAGTC | 4 cut(s) | 264, 829, 1036, 1741 |
| PpsI | GAGTC | 4 cut(s) | 264, 829, 1036, 1741 |
| PscI | ACATGT | 1 cut(s) | 1124 |
| Psp1406I | AACGTT | 1 cut(s) | 1926 |
| Psp6I | CCWGG | 5 cut(s) | 1324, 1482, 1611, 1766, 1776 |
| PspFI | CCCAGC | 3 cut(s) | 572, 1110, 1639 |
| PspGI | CCWGG | 5 cut(s) | 1324, 1482, 1611, 1766, 1776 |
| PspN4I | GGNNCC | 4 cut(s) | 570, 677, 1153, 1269 |
| PspPI | GGNCC | 5 cut(s) | 371, 1012, 1069, 1764, 1774 |
| PstI | CTGCAG | 1 cut(s) | 1090 |
| PstNI | CAGNNNCTG | 4 cut(s) | 92, 1085, 1120, 1213 |
| PsuI | RGATCY | 5 cut(s) | 43, 1003, 1597, 1903, 1944 |
| PsyI | GACNNNGTC | 1 cut(s) | 1027 |
| PvuII | CAGCTG | 1 cut(s) | 1034 |
| RsaI | GTAC | 4 cut(s) | 61, 248, 1247, 1523 |
| RsaNI | GTAC | 4 cut(s) | 60, 247, 1246, 1522 |
| RseI | CAYNNNNRTG | 2 cut(s) | 922, 1458 |
| SapI | GCTCTTC | 2 cut(s) | 45, 392 |
| SaqAI | TTAA | 4 cut(s) | 759, 909, 1133, 1239 |
| SatI | GCNGC | 5 cut(s) | 84, 420, 1035, 1086, 1630 |
| Sau96I | GGNCC | 5 cut(s) | 371, 1012, 1069, 1764, 1774 |
| SchI | GAGTC | 4 cut(s) | 265, 830, 1037, 1742 |
| ScrFI | CCNGG | 7 cut(s) | 138, 1265, 1326, 1484, 1613, 1768, 1778 |
| SduI | GDGCHC | 4 cut(s) | 148, 573, 1270, 1418 |
| SfaNI | GCATC | 4 cut(s) | 861, 1072, 1350, 1852 |
| SfcI | CTRYAG | 4 cut(s) | 267, 705, 957, 1086 |
| Sfr274I | CTCGAG | 1 cut(s) | 33 |
| SfuI | TTCGAA | 1 cut(s) | 636 |
| SinI | GGWCC | 2 cut(s) | 1012, 1069 |
| SlaI | CTCGAG | 1 cut(s) | 33 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 922, 1458 |
| SmlI | CTYRAG | 3 cut(s) | 33, 1132, 1617 |
| SmoI | CTYRAG | 3 cut(s) | 33, 1132, 1617 |
| SphI | GCATGC | 2 cut(s) | 1354, 1468 |
| SseBI | AGGCCT | 1 cut(s) | 1582 |
| SsiI | CCGC | 5 cut(s) | 160, 402, 410, 419, 452 |
| SspMI | CTAG | 2 cut(s) | 423, 1948 |
| StuI | AGGCCT | 1 cut(s) | 1582 |
| StyD4I | CCNGG | 7 cut(s) | 136, 1263, 1324, 1482, 1611, 1766, 1776 |
| StyI | CCWWGG | 3 cut(s) | 971, 1577, 1593 |
| TaaI | ACNGT | 4 cut(s) | 715, 1043, 1069, 1883 |
| TaiI | ACGT | 3 cut(s) | 381, 1413, 1929 |
| TatI | WGTACW | 1 cut(s) | 1245 |
| TauI | GCSGC | 1 cut(s) | 422 |
| TfiI | GAWTC | 3 cut(s) | 170, 278, 1507 |
| Tru1I | TTAA | 4 cut(s) | 759, 909, 1133, 1239 |
| Tru9I | TTAA | 4 cut(s) | 759, 909, 1133, 1239 |
| TscAI | CASTG | 1 cut(s) | 1361 |
| TseFI | GTSAC | 3 cut(s) | 257, 964, 1883 |
| TseI | GCWGC | 4 cut(s) | 83, 1034, 1085, 1629 |
| Tsp45I | GTSAC | 3 cut(s) | 257, 964, 1883 |
| TspDTI | ATGAA | 9 cut(s) | 17, 54, 291, 710, 875, 892, 1716, 1755, 1837 |
| TspGWI | ACGGA | 4 cut(s) | 306, 479, 842, 1040 |
| TspRI | CASTG | 1 cut(s) | 1361 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1027 |
| Vha464I | CTTAAG | 1 cut(s) | 1132 |
| VneI | GTGCAC | 1 cut(s) | 144 |
| VpaK11BI | GGWCC | 2 cut(s) | 1012, 1069 |
| XapI | RAATTY | 3 cut(s) | 533, 610, 1844 |
| XceI | RCATGY | 3 cut(s) | 1128, 1354, 1468 |
| XhoI | CTCGAG | 1 cut(s) | 33 |
| XmiI | GTMKAC | 2 cut(s) | 1045, 1061 |
| XmnI | GAANNNNTTC | 2 cut(s) | 882, 1654 |
| XspI | CTAG | 2 cut(s) | 423, 1948 |
| Zsp2I | ATGCAT | 1 cut(s) | 591 |