Rw7G039650

Ribosomal protein-like protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Forward (+)
61035633 .. 61038365
2733 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G039650.1

Sequence Viewer

Length: 1251 bp
ATGGAAGACCAGTTATTGTTGCAACCAAACAGGGAACGTGAAAATATGGAAGAGCTCGAGCGGATTCAAGCAACAAACTCTCAAGCGGCTGCGATGGTGGCGCAATATCAATTATCGGATGCACCTAGAGGGCGTGGTTCACGACCTGGCCGTGCCCCAAATGTCGAAAGACATAGAGAAGTTCGAGGTCATTTTCTCCTGGAGGATTACTTTGTCGAACGTCCGGTGTACGACGAAGCAGGTTTTCAGAGGCTGTACAGAATGCAAATACATGTCTTCCAACGCATAATGGAAGACCTATGCAACTTCGATAGTTTTTGGGGACAAAAAGCAGATGCCACTGGAAAAATGGGACTGCTTCCTGAACAAAAAATGACAGGTGCCCTGAGAATGCTTGCGTACGGTGCAGCTGCAGATCAATGTGATGAGATCACTAGGATGGGGGCTTCTACAGCGCTGGAATGTCTCAAGAAATTTTGTAGACAGGTCGAGTTTCTTTATGGTGGGTGGTTTCTTTGTCCTCCAAATCCCGCTGATCTATATAGGCTTCTCAACAGAGGACAACGCCGTGGGTTTCCAGGCATGATTGGGAGCATCGATTGCATGCATTGGGAGTGGAAGAATTGCCCAACCGGCTGGGCTGGAGCTTTCTCGGGTCGAAAGGGCAGACCAACTATTATTCTTAAAGCACGTGTCATAGGTGGAACTGCTCCTCTGGTTGAGTTTGAAGTCAATAACAAAAGGTATACCAATGGTTACTATCTTGCTGATGGAATATATCCGAGGTGGTCCACTTTTGTCAAAACAATATCAAACCCTAGAACAGAAGATGAGAAACACTTTTGTAAAAAACAAGAGGCTTATCGCAAAGATGTGGAGAGGTGTTTTGGTATCCTTCAATCTCGATGGGCCATACTGCGTCACGGTGCTAGGTTGTTTAAATTGGAAGATCTTCGAGCCATTATGATAAGTTGTATCATTCTTCATAACATGATTGTGGATGATGAGTTTGTTGAGGAAGAATTTGTGGAGTCTCAAGAAGCTGATCTAATGAATCCAGCAATGGCAACCGTCTATGACCGGCCTGTGCATCCTGATTCTAGAGCACCTATTCCTTTCGAACCAGTAGGGAGAGATGGACAGAATCTTCCTGCATTCATGGATCGTGAATTTCAGGTAGAGTCAGCCTATCTCCACAAGTGCCTGCAAGATGATTTGGTGATGCACAATTGGAACATGGATGGTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

416

Amino Acids

48.04

Weight (kDa)

6.12

Isoelectric Point (pI)

45.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plant_tran PF04827 174 - 230 9.2e-20 Plant transposon protein
Plant_tran PF04827 232 - 336 2.5e-41 Plant transposon protein
DDE_Tnp_4 PF13359 251 - 330 5e-07 DDE superfamily endonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000010)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G13770 AT3G22935
fragaria_vesca FvH4_1g19462 FvH4_1g21002 FvH4_1g21032 FvH4_2g02513 FvH4_2g07131 FvH4_2g22601 FvH4_3g23931 FvH4_3g29161 FvH4_3g32681 FvH4_3g39621 FvH4_3g45901 FvH4_4g04071 FvH4_4g14181 FvH4_4g15491 FvH4_4g18642 FvH4_5g16781 FvH4_5g29682 FvH4_6g04374 FvH4_6g34461 FvH4_7g17722
malus_domestica MD00G1014100.v1.1 MD04G1011800.v1.1 MD13G1144100.v1.1 MD16G1019600.v1.1
pyrus_communis pycom01g04210 pycom01g12000 pycom01g15890 pycom01g19860 pycom02g17740 pycom02g18820 pycom02g21290 pycom03g10610 pycom03g10620 pycom03g17650 pycom03g18850 pycom04g02580 pycom04g11550 pycom04g16020 pycom04g16970 pycom04g20620 pycom05g02050 pycom05g15110 pycom05g19320 pycom05g22740 pycom05g23390 pycom05g24260 pycom05g27160 pycom06g05770 pycom06g08260 pycom06g20210 pycom07g00590 pycom07g11710 pycom07g13480 pycom07g22590 pycom08g12830 pycom08g12840 pycom08g19000 pycom09g03170 pycom09g11430 pycom10g02750 pycom10g08960 pycom10g11510 pycom11g12790 pycom11g12880 pycom11g21440 pycom11g22100 pycom11g23860 pycom12g08170 pycom13g17360 pycom13g20660 pycom13g21760 pycom13g23260 pycom13g24410 pycom13g27100 pycom14g09220 pycom15g14620 pycom15g17850 pycom15g25990 pycom15g32010 pycom15g33600 pycom16g19290 pycom16g20120 pycom16g20860 pycom16g24310 pycom16g24320 pycom17g02330 pycom17g14100 pycom17g19860 pycom17g21640
rosa_chinensis RchiOBHm_Chr1g0318041 RchiOBHm_Chr1g0318051 RchiOBHm_Chr2g0149311 RchiOBHm_Chr3g0476341 RchiOBHm_Chr4g0399161 RchiOBHm_Chr6g0260671 RchiOBHm_Chr7g0200351 RchiOBHm_Chr7g0225121
rosa_laevigata RLG00000002081 RLG00000002132 RLG00000002369 RLG00000003014 RLG00000012993 RLG00000028325 RLG00000028526 RLG00000031672
rosa_multiflora Rmu_co8010630.1_g000001 Rmu_co8061670.1_g000001 Rmu_co8090380.1_g000001 Rmu_co8160814.1_g000001 Rmu_co8191344.1_g000001 Rmu_co8211728.1_g000001 Rmu_co8219216.1_g000001 Rmu_co8253645.1_g000001 Rmu_co8255909.1_g000001 Rmu_co8255973.1_g000001 Rmu_co8279463.1_g000001 Rmu_co8284749.1_g000001 Rmu_co8296329.1_g000001 Rmu_co8303277.1_g000001 Rmu_co8318269.1_g000001 Rmu_co8335959.1_g000001 Rmu_co8388437.1_g000001 Rmu_co8404601.1_g000001 Rmu_co8423343.1_g000001 Rmu_co8486883.1_g000001 Rmu_sc0000018.1_g000004 Rmu_sc0000026.1_g000008 Rmu_sc0000030.1_g000021 Rmu_sc0000070.1_g000062 Rmu_sc0000079.1_g000034 Rmu_sc0000098.1_g000005 Rmu_sc0000116.1_g000007 Rmu_sc0000129.1_g000008 Rmu_sc0000161.1_g000003 Rmu_sc0000206.1_g000016 Rmu_sc0000215.1_g000009 Rmu_sc0000242.1_g000001 Rmu_sc0000288.1_g000016 Rmu_sc0000288.1_g000017 Rmu_sc0000306.1_g000001 Rmu_sc0000332.1_g000007 Rmu_sc0000333.1_g000042 Rmu_sc0000347.1_g000019 Rmu_sc0000353.1_g000030 Rmu_sc0000361.1_g000010 Rmu_sc0000363.1_g000004 Rmu_sc0000382.1_g000026 Rmu_sc0000441.1_g000136 Rmu_sc0000453.1_g000011 Rmu_sc0000455.1_g000004 Rmu_sc0000479.1_g000004 Rmu_sc0000501.1_g000030 Rmu_sc0000536.1_g000033 Rmu_sc0000546.1_g000078 Rmu_sc0000547.1_g000009 Rmu_sc0000565.1_g000016 Rmu_sc0000610.1_g000021 Rmu_sc0000656.1_g000005 Rmu_sc0000656.1_g000006 Rmu_sc0000663.1_g000016 Rmu_sc0000698.1_g000090 Rmu_sc0000698.1_g000091 Rmu_sc0000713.1_g000007 Rmu_sc0000745.1_g000018 Rmu_sc0000854.1_g000017 Rmu_sc0000857.1_g000020 Rmu_sc0000861.1_g000010 Rmu_sc0000894.1_g000046 Rmu_sc0000918.1_g000034 Rmu_sc0000924.1_g000053 Rmu_sc0000965.1_g000013 Rmu_sc0001047.1_g000027 Rmu_sc0001058.1_g000007 Rmu_sc0001068.1_g000010 Rmu_sc0001072.1_g000016 Rmu_sc0001096.1_g000019 Rmu_sc0001140.1_g000004 Rmu_sc0001144.1_g000041 Rmu_sc0001158.1_g000005 Rmu_sc0001158.1_g000006 Rmu_sc0001159.1_g000052 Rmu_sc0001208.1_g000024 Rmu_sc0001208.1_g000025 Rmu_sc0001227.1_g000013 Rmu_sc0001227.1_g000014 Rmu_sc0001240.1_g000012 Rmu_sc0001260.1_g000009 Rmu_sc0001298.1_g000016 Rmu_sc0001298.1_g000017 Rmu_sc0001339.1_g000010 Rmu_sc0001346.1_g000005 Rmu_sc0001347.1_g000018 Rmu_sc0001348.1_g000016 Rmu_sc0001348.1_g000025 Rmu_sc0001365.1_g000006 Rmu_sc0001386.1_g000006 Rmu_sc0001460.1_g000003 Rmu_sc0001496.1_g000001 Rmu_sc0001501.1_g000056 Rmu_sc0001551.1_g000019 Rmu_sc0001551.1_g000020 Rmu_sc0001565.1_g000059 Rmu_sc0001585.1_g000014 Rmu_sc0001617.1_g000044 Rmu_sc0001630.1_g000027 Rmu_sc0001653.1_g000010 Rmu_sc0001699.1_g000019 Rmu_sc0001699.1_g000020 Rmu_sc0001700.1_g000040 Rmu_sc0001702.1_g000034 Rmu_sc0001711.1_g000016 Rmu_sc0001715.1_g000019 Rmu_sc0001715.1_g000020 Rmu_sc0001768.1_g000037 Rmu_sc0001782.1_g000047 Rmu_sc0001782.1_g000048 Rmu_sc0001803.1_g000036 Rmu_sc0001823.1_g000004 Rmu_sc0001832.1_g000010 Rmu_sc0001832.1_g000014 Rmu_sc0001838.1_g000002 Rmu_sc0001840.1_g000015 Rmu_sc0001873.1_g000003 Rmu_sc0001877.1_g000013 Rmu_sc0001966.1_g000032 Rmu_sc0001977.1_g000021 Rmu_sc0001991.1_g000009 Rmu_sc0001998.1_g000006 Rmu_sc0002011.1_g000029 Rmu_sc0002012.1_g000013 Rmu_sc0002042.1_g000007 Rmu_sc0002091.1_g000014 Rmu_sc0002095.1_g000001 Rmu_sc0002116.1_g000007 Rmu_sc0002116.1_g000008 Rmu_sc0002188.1_g000005 Rmu_sc0002188.1_g000006 Rmu_sc0002235.1_g000096 Rmu_sc0002269.1_g000014 Rmu_sc0002269.1_g000015 Rmu_sc0002312.1_g000022 Rmu_sc0002312.1_g000045 Rmu_sc0002316.1_g000011 Rmu_sc0002357.1_g000040 Rmu_sc0002365.1_g000020 Rmu_sc0002365.1_g000021 Rmu_sc0002369.1_g000023 Rmu_sc0002372.1_g000043 Rmu_sc0002414.1_g000036 Rmu_sc0002438.1_g000029 Rmu_sc0002545.1_g000002 Rmu_sc0002545.1_g000031 Rmu_sc0002548.1_g000006 Rmu_sc0002553.1_g000003 Rmu_sc0002666.1_g000006 Rmu_sc0002775.1_g000009 Rmu_sc0002791.1_g000010 Rmu_sc0002801.1_g000024 Rmu_sc0002809.1_g000035 Rmu_sc0002868.1_g000021 Rmu_sc0002877.1_g000006 Rmu_sc0002877.1_g000007 Rmu_sc0002983.1_g000009 Rmu_sc0003002.1_g000006 Rmu_sc0003018.1_g000004 Rmu_sc0003073.1_g000017 Rmu_sc0003074.1_g000016 Rmu_sc0003151.1_g000027 Rmu_sc0003244.1_g000015 Rmu_sc0003259.1_g000002 Rmu_sc0003259.1_g000003 Rmu_sc0003265.1_g000002 Rmu_sc0003304.1_g000012 Rmu_sc0003317.1_g000013 Rmu_sc0003393.1_g000001 Rmu_sc0003436.1_g000005 Rmu_sc0003438.1_g000001 Rmu_sc0003438.1_g000002 Rmu_sc0003450.1_g000006 Rmu_sc0003507.1_g000035 Rmu_sc0003525.1_g000008 Rmu_sc0003541.1_g000013 Rmu_sc0003543.1_g000012 Rmu_sc0003629.1_g000007 Rmu_sc0003630.1_g000041 Rmu_sc0003636.1_g000003 Rmu_sc0003686.1_g000003 Rmu_sc0003722.1_g000051 Rmu_sc0003730.1_g000008 Rmu_sc0003731.1_g000006 Rmu_sc0003749.1_g000002 Rmu_sc0003762.1_g000015 Rmu_sc0003785.1_g000018 Rmu_sc0003846.1_g000002 Rmu_sc0003846.1_g000003 Rmu_sc0003846.1_g000004 Rmu_sc0003880.1_g000018 Rmu_sc0003882.1_g000034 Rmu_sc0003902.1_g000021 Rmu_sc0003953.1_g000013 Rmu_sc0003962.1_g000005 Rmu_sc0004048.1_g000014 Rmu_sc0004048.1_g000015 Rmu_sc0004068.1_g000003 Rmu_sc0004088.1_g000007 Rmu_sc0004092.1_g000028 Rmu_sc0004101.1_g000007 Rmu_sc0004115.1_g000005 Rmu_sc0004259.1_g000002 Rmu_sc0004298.1_g000011 Rmu_sc0004298.1_g000016 Rmu_sc0004298.1_g000017 Rmu_sc0004469.1_g000005 Rmu_sc0004481.1_g000018 Rmu_sc0004486.1_g000004 Rmu_sc0004507.1_g000009 Rmu_sc0004514.1_g000032 Rmu_sc0004523.1_g000008 Rmu_sc0004562.1_g000001 Rmu_sc0004624.1_g000011 Rmu_sc0004719.1_g000005 Rmu_sc0004751.1_g000010 Rmu_sc0004751.1_g000027 Rmu_sc0004821.1_g000006 Rmu_sc0004821.1_g000007 Rmu_sc0004876.1_g000025 Rmu_sc0004932.1_g000019 Rmu_sc0005014.1_g000016 Rmu_sc0005038.1_g000008 Rmu_sc0005065.1_g000048 Rmu_sc0005132.1_g000021 Rmu_sc0005137.1_g000037 Rmu_sc0005173.1_g000009 Rmu_sc0005237.1_g000010 Rmu_sc0005237.1_g000011 Rmu_sc0005257.1_g000018 Rmu_sc0005292.1_g000017 Rmu_sc0005294.1_g000030 Rmu_sc0005314.1_g000020 Rmu_sc0005333.1_g000001 Rmu_sc0005378.1_g000031 Rmu_sc0005389.1_g000014 Rmu_sc0005394.1_g000002 Rmu_sc0005442.1_g000006 Rmu_sc0005514.1_g000023 Rmu_sc0005629.1_g000010 Rmu_sc0005693.1_g000012 Rmu_sc0005711.1_g000001 Rmu_sc0005716.1_g000006 Rmu_sc0005725.1_g000014 Rmu_sc0005748.1_g000015 Rmu_sc0005748.1_g000016 Rmu_sc0005762.1_g000010 Rmu_sc0005781.1_g000007 Rmu_sc0005781.1_g000008 Rmu_sc0005781.1_g000009 Rmu_sc0005802.1_g000002 Rmu_sc0005806.1_g000003 Rmu_sc0005834.1_g000017 Rmu_sc0005878.1_g000016 Rmu_sc0005913.1_g000002 Rmu_sc0005939.1_g000002 Rmu_sc0005950.1_g000015 Rmu_sc0005958.1_g000005 Rmu_sc0005958.1_g000006 Rmu_sc0005971.1_g000002 Rmu_sc0006009.1_g000003 Rmu_sc0006044.1_g000010 Rmu_sc0006044.1_g000011 Rmu_sc0006123.1_g000010 Rmu_sc0006138.1_g000009 Rmu_sc0006168.1_g000028 Rmu_sc0006173.1_g000032 Rmu_sc0006175.1_g000013 Rmu_sc0006175.1_g000014 Rmu_sc0006268.1_g000003 Rmu_sc0006273.1_g000015 Rmu_sc0006320.1_g000010 Rmu_sc0006323.1_g000003 Rmu_sc0006399.1_g000009 Rmu_sc0006417.1_g000007 Rmu_sc0006435.1_g000008 Rmu_sc0006499.1_g000008 Rmu_sc0006499.1_g000009 Rmu_sc0006556.1_g000012 Rmu_sc0006616.1_g000005 Rmu_sc0006621.1_g000010 Rmu_sc0006621.1_g000011 Rmu_sc0006632.1_g000009 Rmu_sc0006653.1_g000015 Rmu_sc0006653.1_g000016 Rmu_sc0006723.1_g000004 Rmu_sc0006824.1_g000024 Rmu_sc0006833.1_g000006 Rmu_sc0006833.1_g000007 Rmu_sc0006875.1_g000003 Rmu_sc0007017.1_g000007 Rmu_sc0007095.1_g000001 Rmu_sc0007239.1_g000010 Rmu_sc0007264.1_g000008 Rmu_sc0007264.1_g000010 Rmu_sc0007319.1_g000002 Rmu_sc0007333.1_g000013 Rmu_sc0007468.1_g000001 Rmu_sc0007486.1_g000003 Rmu_sc0007618.1_g000012 Rmu_sc0007664.1_g000003 Rmu_sc0007664.1_g000004 Rmu_sc0007782.1_g000007 Rmu_sc0007985.1_g000004 Rmu_sc0007985.1_g000005 Rmu_sc0008009.1_g000002 Rmu_sc0008223.1_g000012 Rmu_sc0008260.1_g000001 Rmu_sc0008260.1_g000002 Rmu_sc0008290.1_g000001 Rmu_sc0008325.1_g000015 Rmu_sc0008325.1_g000016 Rmu_sc0008441.1_g000014 Rmu_sc0008441.1_g000015 Rmu_sc0008528.1_g000010 Rmu_sc0008600.1_g000025 Rmu_sc0008622.1_g000010 Rmu_sc0008629.1_g000010 Rmu_sc0008652.1_g000003 Rmu_sc0008720.1_g000001 Rmu_sc0008916.1_g000006 Rmu_sc0008916.1_g000007 Rmu_sc0008922.1_g000002 Rmu_sc0009149.1_g000001 Rmu_sc0009149.1_g000002 Rmu_sc0009208.1_g000027 Rmu_sc0009240.1_g000036 Rmu_sc0009240.1_g000037 Rmu_sc0009414.1_g000004 Rmu_sc0009414.1_g000005 Rmu_sc0009414.1_g000006 Rmu_sc0009920.1_g000002 Rmu_sc0009945.1_g000002 Rmu_sc0010071.1_g000003 Rmu_sc0010338.1_g000003 Rmu_sc0010384.1_g000002 Rmu_sc0010384.1_g000003 Rmu_sc0010460.1_g000001 Rmu_sc0010460.1_g000002 Rmu_sc0010476.1_g000001 Rmu_sc0010525.1_g000002 Rmu_sc0010621.1_g000002 Rmu_sc0010650.1_g000001 Rmu_sc0010668.1_g000001 Rmu_sc0010856.1_g000003 Rmu_sc0010914.1_g000011 Rmu_sc0010914.1_g000012 Rmu_sc0010963.1_g000010 Rmu_sc0011010.1_g000001 Rmu_sc0011010.1_g000003 Rmu_sc0011036.1_g000001 Rmu_sc0011218.1_g000007 Rmu_sc0011280.1_g000007 Rmu_sc0011576.1_g000001 Rmu_sc0011576.1_g000002 Rmu_sc0011648.1_g000002 Rmu_sc0011648.1_g000003 Rmu_sc0011778.1_g000002 Rmu_sc0011778.1_g000007 Rmu_sc0011844.1_g000001 Rmu_sc0012503.1_g000005 Rmu_sc0012746.1_g000043 Rmu_sc0012746.1_g000044 Rmu_sc0013113.1_g000003 Rmu_sc0013160.1_g000008 Rmu_sc0013160.1_g000009 Rmu_sc0013257.1_g000009 Rmu_sc0013257.1_g000010 Rmu_sc0013430.1_g000001 Rmu_sc0013503.1_g000001 Rmu_sc0013558.1_g000008 Rmu_sc0013959.1_g000002 Rmu_sc0014204.1_g000004 Rmu_sc0014406.1_g000004 Rmu_sc0014417.1_g000004 Rmu_sc0014417.1_g000005 Rmu_sc0014478.1_g000002 Rmu_sc0014762.1_g000005 Rmu_sc0014846.1_g000006 Rmu_sc0015188.1_g000002 Rmu_sc0015188.1_g000003 Rmu_sc0015304.1_g000005 Rmu_sc0015304.1_g000006 Rmu_sc0015756.1_g000001 Rmu_sc0016149.1_g000008 Rmu_sc0016149.1_g000009 Rmu_sc0016694.1_g000002 Rmu_sc0016694.1_g000003 Rmu_sc0016694.1_g000004 Rmu_sc0016800.1_g000001 Rmu_sc0017928.1_g000002 Rmu_sc0018113.1_g000001 Rmu_sc0018284.1_g000001 Rmu_sc0019033.1_g000001 Rmu_sc0019072.1_g000001 Rmu_sc0019133.1_g000002 Rmu_sc0019133.1_g000003 Rmu_sc0019971.1_g000001 Rmu_sc0020305.1_g000002 Rmu_sc0021207.1_g000005 Rmu_sc0021485.1_g000001 Rmu_sc0021485.1_g000002 Rmu_sc0021663.1_g000001 Rmu_sc0023685.1_g000003 Rmu_sc0023989.1_g000004 Rmu_sc0024030.1_g000005 Rmu_sc0024049.1_g000001 Rmu_sc0024503.1_g000002 Rmu_sc0025086.1_g000001 Rmu_sc0025770.1_g000002 Rmu_sc0027362.1_g000001 Rmu_sc0027605.1_g000001 Rmu_sc0029364.1_g000001 Rmu_sc0029664.1_g000002 Rmu_sc0029686.1_g000001 Rmu_sc0029927.1_g000001 Rmu_sc0032648.1_g000001 Rmu_sc0034541.1_g000001 Rmu_sc0035189.1_g000001 Rmu_sc0035224.1_g000001 Rmu_sc0035224.1_g000002 Rmu_sc0035231.1_g000001 Rmu_sc0035860.1_g000001 Rmu_sc0036358.1_g000002 Rmu_sc0038525.1_g000001 Rmu_sc0038544.1_g000001 Rmu_sc0041072.1_g000002 Rmu_sc0042830.1_g000001 Rmu_ssc0000007.1_g000035 Rmu_ssc0000027.1_g000005 Rmu_ssc0000050.1_g000056 Rmu_ssc0000050.1_g000072 Rmu_ssc0000084.1_g000005 Rmu_ssc0000110.1_g000007 Rmu_ssc0000124.1_g000004 Rmu_ssc0000182.1_g000009 Rmu_ssc0000189.1_g000036 Rmu_ssc0000201.1_g000017 Rmu_ssc0000201.1_g000018 Rmu_ssc0000204.1_g000007 Rmu_ssc0000228.1_g000004 Rmu_ssc0000240.1_g000020 Rmu_ssc0000240.1_g000021 Rmu_ssc0000263.1_g000013 Rmu_ssc0000263.1_g000014 Rmu_ssc0000267.1_g000008 Rmu_ssc0000299.1_g000015 Rmu_ssc0000330.1_g000007 Rmu_ssc0000330.1_g000008 Rmu_ssc0000359.1_g000006 Rmu_ssc0000386.1_g000054 Rmu_ssc0000387.1_g000005 Rmu_ssc0000393.1_g000038 Rmu_ssc0000400.1_g000066 Rmu_ssc0000440.1_g000004 Rmu_ssc0000452.1_g000015
rosa_roxburghii Rroxscaffold_1G00033670 Rroxscaffold_1G00037880 Rroxscaffold_2G00098140 Rroxscaffold_2G00146520 Rroxscaffold_4G00292850 Rroxscaffold_4G00306770 Rroxscaffold_4G00331150 Rroxscaffold_5G00349760 Rroxscaffold_5G00377350 Rroxscaffold_5G00383090 Rroxscaffold_6G00389500 Rroxscaffold_6G00398610 Rroxscaffold_6G00412390 Rroxscaffold_7G00158890 Rroxscaffold_7G00206210 Rroxscaffold_7G00206610
rosa_rugosa Rorug01G0000400.1 Rorug01G0000500.1 Rorug02G0281100 Rorug02G0281100 Rorug04G0186000 Rorug04G0202000 Rorug05G0583800 Rorug06G0013000 Rorug06G0071600 Rorug07G0162700 Rorug07G0162700 Rorug07G0217800 Rorug07G0301000
rosa_samantha Rh1AG222900 Rh1BG189100 Rh1CG224600 Rh2BG234100 Rh2CG180600 Rh3DG267500 Rh4BG361000 Rh4CG375300 Rh4DG114300 Rh5AG464200 Rh6AG153800 Rh6CG149600
rosa_wichuraiana Rw0G004880 Rw0G008820 Rw0G009090 Rw1G002400 Rw1G002630 Rw1G008990 Rw1G015700 Rw1G015940 Rw1G019460 Rw1G020990 Rw1G021190 Rw2G002630 Rw2G022330 Rw2G023900 Rw2G035810 Rw2G037340 Rw2G039650 Rw3G024690 Rw3G025990 Rw4G002910 Rw4G007470 Rw4G010560 Rw4G011420 Rw4G012580 Rw4G018330 Rw4G033340 Rw5G001180 Rw5G013720 Rw5G014150 Rw5G016490 Rw5G027140 Rw5G038840 Rw5G039640 Rw6G011960 Rw6G033090 Rw6G036170 Rw6G041420 Rw6G043630 Rw7G025610 Rw7G039650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 230
AccB1I GGYRCC 1 cut(s) 380
AccBSI CCGCTC 1 cut(s) 61
AccI GTMKAC 2 cut(s) 481, 746
AciI CCGC 3 cut(s) 61, 86, 531
AclWI GGATC 1 cut(s) 1170
AcoI YGGCCR 1 cut(s) 148
AcsI RAATTY 3 cut(s) 473, 1022, 1169
AcvI CACGTG 1 cut(s) 692
AfaI GTAC 3 cut(s) 230, 257, 401
AfeI AGCGCT 1 cut(s) 456
AflIII ACRYGT 2 cut(s) 271, 691
AgsI TTSAA 3 cut(s) 68, 728, 899
AjnI CCWGG 3 cut(s) 145, 198, 577
AluBI AGCT 4 cut(s) 55, 410, 647, 1043
AluI AGCT 4 cut(s) 55, 410, 647, 1043
Alw21I GWGCWC 2 cut(s) 57, 1108
Alw26I GTCTC 2 cut(s) 470, 1038
AlwI GGATC 1 cut(s) 1170
AlwNI CAGNNNCTG 1 cut(s) 253
Ama87I CYCGRG 2 cut(s) 56, 652
Aor51HI AGCGCT 1 cut(s) 456
AoxI GGCC 3 cut(s) 148, 909, 1082
ApeKI GCWGC 3 cut(s) 89, 407, 410
ApoI RAATTY 3 cut(s) 473, 1022, 1169
Asp700I GAANNNNTTC 1 cut(s) 951
AspLEI GCGC 2 cut(s) 103, 457
AspS9I GGNCC 2 cut(s) 789, 909
AsuHPI GGTGA 1 cut(s) 1231
AsuII TTCGAA 1 cut(s) 1119
AvaI CYCGRG 2 cut(s) 56, 652
AvaII GGWCC 1 cut(s) 789
BaeGI GKGCMC 2 cut(s) 157, 385
BanI GGYRCC 1 cut(s) 380
BanII GRGCYC 1 cut(s) 57
BbrPI CACGTG 1 cut(s) 692
BbsI GAAGAC 3 cut(s) 12, 268, 300
Bbv12I GWGCWC 2 cut(s) 57, 1108
BbvI GCAGC 3 cut(s) 76, 397, 419
BccI CCATC 6 cut(s) 88, 433, 764, 900, 1130, 1235
BceAI ACGGC 2 cut(s) 135, 552
BciT130I CCWGG 3 cut(s) 147, 200, 579
BciVI GTATCC 1 cut(s) 902
BcoDI GTCTC 2 cut(s) 470, 1038
BfaI CTAG 5 cut(s) 126, 435, 819, 930, 1101
BfmI CTRYAG 2 cut(s) 411, 450
BfoI RGCGCY 1 cut(s) 458
BfuAI ACCTGC 1 cut(s) 230
BfuI GTATCC 1 cut(s) 902
BglI GCCNNNNNGGC 1 cut(s) 633
BglII AGATCT 1 cut(s) 949
BisI GCNGC 4 cut(s) 87, 90, 408, 411
BlsI GCNGC 4 cut(s) 88, 91, 409, 412
Bme1390I CCNGG 3 cut(s) 147, 200, 579
Bme18I GGWCC 1 cut(s) 789
BmeT110I CYCGRG 2 cut(s) 56, 652
BmgT120I GGNCC 2 cut(s) 789, 909
BmiI GGNNCC 1 cut(s) 382
BmrFI CCNGG 3 cut(s) 147, 200, 579
BmsI GCATC 5 cut(s) 109, 325, 603, 1099, 1212
BpiI GAAGAC 3 cut(s) 12, 268, 300
BpmI CTGGAG 2 cut(s) 221, 663
Bpu14I TTCGAA 1 cut(s) 1119
BpuEI CTTGAG 3 cut(s) 66, 452, 1020
Bsa29I ATCGAT 1 cut(s) 597
BsaAI YACGTR 1 cut(s) 692
BsaJI CCNNGG 2 cut(s) 568, 782
BsaWI WCCGGW 1 cut(s) 223
Bse118I RCCGGY 2 cut(s) 632, 1080
Bse1I ACTGG 3 cut(s) 10, 346, 1124
Bse3DI GCAATG 1 cut(s) 1068
BseBI CCWGG 3 cut(s) 147, 200, 579
BseCI ATCGAT 1 cut(s) 597
BseDI CCNNGG 2 cut(s) 568, 782
BseGI GGATG 5 cut(s) 124, 444, 1006, 1090, 1246
BseMI GCAATG 1 cut(s) 1068
BseMII CTCAG 1 cut(s) 377
BseNI ACTGG 3 cut(s) 10, 346, 1124
BseRI GAGGAG 1 cut(s) 702
BseSI GKGCMC 2 cut(s) 157, 385
BseXI GCAGC 3 cut(s) 76, 397, 419
BseYI CCCAGC 1 cut(s) 636
BsgI GTGCAG 1 cut(s) 426
BshFI GGCC 3 cut(s) 150, 911, 1084
BshNI GGYRCC 1 cut(s) 380
BshVI ATCGAT 1 cut(s) 597
BsiHKAI GWGCWC 2 cut(s) 57, 1108
BsiHKCI CYCGRG 2 cut(s) 56, 652
BsiSI CCGG 3 cut(s) 224, 633, 1081
BsiWI CGTACG 1 cut(s) 399
BslFI GGGAC 2 cut(s) 336, 366
BsmAI GTCTC 2 cut(s) 470, 1038
BsmFI GGGAC 2 cut(s) 336, 366
BsmI GAATGC 3 cut(s) 267, 396, 1154
BsnI GGCC 3 cut(s) 150, 911, 1084
BsoBI CYCGRG 2 cut(s) 56, 652
Bsp119I TTCGAA 1 cut(s) 1119
Bsp1286I GDGCHC 4 cut(s) 57, 157, 385, 1108
Bsp1407I TGTACA 1 cut(s) 255
Bsp143I GATC 6 cut(s) 415, 429, 535, 949, 1045, 1162
BspACI CCGC 3 cut(s) 61, 86, 531
BspANI GGCC 3 cut(s) 150, 911, 1084
BspCNI CTCAG 1 cut(s) 378
BspDI ATCGAT 1 cut(s) 597
BspLI GGNNCC 1 cut(s) 382
BspMAI CTGCAG 1 cut(s) 415
BspMI ACCTGC 1 cut(s) 230
BspPI GGATC 1 cut(s) 1170
BspQI GCTCTTC 1 cut(s) 45
BspT104I TTCGAA 1 cut(s) 1119
BspT107I GGYRCC 1 cut(s) 380
BsrBI CCGCTC 1 cut(s) 61
BsrDI GCAATG 1 cut(s) 1068
BsrFI RCCGGY 2 cut(s) 632, 1080
BsrGI TGTACA 1 cut(s) 255
BsrI ACTGG 3 cut(s) 10, 346, 1124
BssAI RCCGGY 2 cut(s) 632, 1080
BssECI CCNNGG 2 cut(s) 568, 782
BssMI GATC 6 cut(s) 415, 429, 535, 949, 1045, 1162
BssNAI GTATAC 1 cut(s) 747
Bst1107I GTATAC 1 cut(s) 747
Bst2UI CCWGG 3 cut(s) 147, 200, 579
Bst4CI ACNGT 3 cut(s) 404, 926, 1072
Bst6I CTCTTC 1 cut(s) 45
BstAPI GCANNNNNTGC 1 cut(s) 600
BstAUI TGTACA 1 cut(s) 255
BstBAI YACGTR 1 cut(s) 692
BstBI TTCGAA 1 cut(s) 1119
BstC8I GCNNGC 3 cut(s) 396, 605, 1205
BstDEI CTNAG 1 cut(s) 386
BstDSI CCRYGG 1 cut(s) 568
BstF5I GGATG 5 cut(s) 124, 444, 1006, 1090, 1246
BstH2I RGCGCY 1 cut(s) 458
BstHHI GCGC 2 cut(s) 103, 457
BstKTI GATC 6 cut(s) 418, 432, 538, 952, 1048, 1165
BstMAI GTCTC 2 cut(s) 470, 1038
BstMBI GATC 6 cut(s) 415, 429, 535, 949, 1045, 1162
BstMWI GCNNNNNNNGC 5 cut(s) 98, 404, 452, 600, 633
BstNI CCWGG 3 cut(s) 147, 200, 579
BstNSI RCATGY 2 cut(s) 275, 607
BstSCI CCNGG 3 cut(s) 145, 198, 577
BstSFI CTRYAG 2 cut(s) 411, 450
BstSLI GKGCMC 2 cut(s) 157, 385
BstV1I GCAGC 3 cut(s) 76, 397, 419
BstV2I GAAGAC 3 cut(s) 12, 268, 300
BstX2I RGATCY 1 cut(s) 949
BstXI CCANNNNNNTGG 1 cut(s) 636
BstYI RGATCY 1 cut(s) 949
BstZ17I GTATAC 1 cut(s) 747
Bsu15I ATCGAT 1 cut(s) 597
BsuI GTATCC 1 cut(s) 902
BsuRI GGCC 3 cut(s) 150, 911, 1084
BsuTUI ATCGAT 1 cut(s) 597
BtgI CCRYGG 1 cut(s) 568
BtgZI GCGATG 1 cut(s) 107
BtsCI GGATG 5 cut(s) 124, 444, 1006, 1090, 1246
BtsIMutI CAGTG 1 cut(s) 339
BveI ACCTGC 1 cut(s) 230
Cac8I GCNNGC 3 cut(s) 396, 605, 1205
CaiI CAGNNNCTG 1 cut(s) 253
CfoI GCGC 2 cut(s) 103, 457
Cfr10I RCCGGY 2 cut(s) 632, 1080
Cfr13I GGNCC 2 cut(s) 789, 909
ClaI ATCGAT 1 cut(s) 597
CseI GACGC 1 cut(s) 908
Csp6I GTAC 3 cut(s) 229, 256, 400
CviAII CATG 6 cut(s) 272, 583, 604, 991, 1159, 1237
CviQI GTAC 3 cut(s) 229, 256, 400
DdeI CTNAG 1 cut(s) 386
DpnI GATC 6 cut(s) 417, 431, 537, 951, 1047, 1164
DpnII GATC 6 cut(s) 415, 429, 535, 949, 1045, 1162
DraI TTTAAA 1 cut(s) 940
EaeI YGGCCR 1 cut(s) 148
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
Ecl136II GAGCTC 1 cut(s) 55
Eco24I GRGCYC 1 cut(s) 57
Eco47I GGWCC 1 cut(s) 789
Eco47III AGCGCT 1 cut(s) 456
Eco53kI GAGCTC 1 cut(s) 55
Eco72I CACGTG 1 cut(s) 692
Eco88I CYCGRG 2 cut(s) 56, 652
EcoICRI GAGCTC 1 cut(s) 55
EcoRII CCWGG 3 cut(s) 145, 198, 577
EcoT22I ATGCAT 1 cut(s) 609
EcoT38I GRGCYC 1 cut(s) 57
FaeI CATG 6 cut(s) 275, 586, 607, 994, 1162, 1240
FaqI GGGAC 2 cut(s) 336, 366
FatI CATG 6 cut(s) 271, 582, 603, 990, 1158, 1236
FauI CCCGC 1 cut(s) 538
FblI GTMKAC 2 cut(s) 481, 746
Fnu4HI GCNGC 4 cut(s) 87, 90, 408, 411
FokI GGATG 4 cut(s) 131, 451, 1013, 1077
FriOI GRGCYC 1 cut(s) 57
Fsp4HI GCNGC 4 cut(s) 87, 90, 408, 411
FspBI CTAG 5 cut(s) 126, 435, 819, 930, 1101
GlaI GCGC 2 cut(s) 102, 456
GluI GCNGC 4 cut(s) 87, 90, 408, 411
GsaI CCCAGC 1 cut(s) 640
GsuI CTGGAG 2 cut(s) 221, 663
HaeII RGCGCY 1 cut(s) 458
HaeIII GGCC 3 cut(s) 150, 911, 1084
HapII CCGG 3 cut(s) 224, 633, 1081
HgaI GACGC 1 cut(s) 908
HhaI GCGC 2 cut(s) 103, 457
Hin1II CATG 6 cut(s) 275, 586, 607, 994, 1162, 1240
Hin6I GCGC 2 cut(s) 101, 455
HinP1I GCGC 2 cut(s) 101, 455
HinfI GANTC 6 cut(s) 64, 1031, 1054, 1097, 1144, 1181
HpaII CCGG 3 cut(s) 224, 633, 1081
HphI GGTGA 1 cut(s) 1231
Hpy166II GTNNAC 5 cut(s) 140, 229, 482, 747, 792
Hpy188I TCNGA 3 cut(s) 118, 249, 783
Hpy188III TCNNGA 8 cut(s) 141, 362, 469, 903, 1037, 1094, 1101, 1166
Hpy8I GTNNAC 5 cut(s) 140, 229, 482, 747, 792
Hpy99I CGWCG 1 cut(s) 236
HpyAV CCTTC 1 cut(s) 905
HpyCH4III ACNGT 3 cut(s) 404, 926, 1072
HpyCH4IV ACGT 3 cut(s) 37, 220, 691
HpyF10VI GCNNNNNNNGC 5 cut(s) 98, 404, 452, 600, 633
HpyF3I CTNAG 1 cut(s) 386
HpySE526I ACGT 3 cut(s) 37, 220, 691
Hsp92II CATG 6 cut(s) 275, 586, 607, 994, 1162, 1240
HspAI GCGC 2 cut(s) 101, 455
Kzo9I GATC 6 cut(s) 415, 429, 535, 949, 1045, 1162
LguI GCTCTTC 1 cut(s) 45
LmnI GCTCC 3 cut(s) 591, 644, 715
Lsp1109I GCAGC 3 cut(s) 76, 397, 419
LweI GCATC 5 cut(s) 109, 325, 603, 1099, 1212
MaeI CTAG 5 cut(s) 126, 435, 819, 930, 1101
MaeII ACGT 3 cut(s) 37, 220, 691
MaeIII GTNAC 2 cut(s) 755, 920
MalI GATC 6 cut(s) 417, 431, 537, 951, 1047, 1164
MbiI CCGCTC 1 cut(s) 61
MboI GATC 6 cut(s) 415, 429, 535, 949, 1045, 1162
MfeI CAATTG 1 cut(s) 1228
MflI RGATCY 1 cut(s) 949
MhlI GDGCHC 4 cut(s) 57, 157, 385, 1108
MluCI AATT 8 cut(s) 110, 473, 622, 941, 1022, 1169, 1228, 1246
MlyI GAGTC 2 cut(s) 1040, 1190
MmeI TCCRAC 1 cut(s) 304
Mph1103I ATGCAT 1 cut(s) 609
MroXI GAANNNNTTC 1 cut(s) 951
MseI TTAA 2 cut(s) 684, 939
MslI CAYNNNNRTG 2 cut(s) 437, 995
MspA1I CMGCKG 2 cut(s) 410, 533
MspI CCGG 3 cut(s) 224, 633, 1081
MspR9I CCNGG 3 cut(s) 147, 200, 579
MunI CAATTG 1 cut(s) 1228
Mva1269I GAATGC 3 cut(s) 267, 396, 1154
MvaI CCWGG 3 cut(s) 147, 200, 579
MwoI GCNNNNNNNGC 5 cut(s) 98, 404, 452, 600, 633
NdeII GATC 6 cut(s) 415, 429, 535, 949, 1045, 1162
NlaIII CATG 6 cut(s) 275, 586, 607, 994, 1162, 1240
NlaIV GGNNCC 1 cut(s) 382
NmuCI GTSAC 1 cut(s) 920
NsiI ATGCAT 1 cut(s) 609
NspI RCATGY 2 cut(s) 275, 607
NspV TTCGAA 1 cut(s) 1119
PaeI GCATGC 1 cut(s) 607
PaeR7I CTCGAG 1 cut(s) 56
PciI ACATGT 1 cut(s) 271
PciSI GCTCTTC 1 cut(s) 45
PcsI WCGNNNNNNNCGW 1 cut(s) 148
PctI GAATGC 3 cut(s) 267, 396, 1154
PdmI GAANNNNTTC 1 cut(s) 951
PfeI GAWTC 4 cut(s) 64, 1054, 1097, 1144
Pfl23II CGTACG 1 cut(s) 399
PfoI TCCNGGA 1 cut(s) 198
PkrI GCNGC 4 cut(s) 88, 91, 409, 412
PleI GAGTC 2 cut(s) 1039, 1189
PmaCI CACGTG 1 cut(s) 692
PmlI CACGTG 1 cut(s) 692
PpsI GAGTC 2 cut(s) 1039, 1189
Ppu21I YACGTR 1 cut(s) 692
PscI ACATGT 1 cut(s) 271
Psp124BI GAGCTC 1 cut(s) 57
Psp6I CCWGG 3 cut(s) 145, 198, 577
PspCI CACGTG 1 cut(s) 692
PspFI CCCAGC 1 cut(s) 636
PspGI CCWGG 3 cut(s) 145, 198, 577
PspLI CGTACG 1 cut(s) 399
PspN4I GGNNCC 1 cut(s) 382
PspPI GGNCC 2 cut(s) 789, 909
PspXI VCTCGAGB 1 cut(s) 56
PstI CTGCAG 1 cut(s) 415
PstNI CAGNNNCTG 1 cut(s) 253
PsuI RGATCY 1 cut(s) 949
PvuII CAGCTG 1 cut(s) 410
RsaI GTAC 3 cut(s) 230, 257, 401
RsaNI GTAC 3 cut(s) 229, 256, 400
RseI CAYNNNNRTG 2 cut(s) 437, 995
SacI GAGCTC 1 cut(s) 57
SapI GCTCTTC 1 cut(s) 45
SaqAI TTAA 2 cut(s) 684, 939
SatI GCNGC 4 cut(s) 87, 90, 408, 411
Sau3AI GATC 6 cut(s) 415, 429, 535, 949, 1045, 1162
Sau96I GGNCC 2 cut(s) 789, 909
SchI GAGTC 2 cut(s) 1040, 1190
ScrFI CCNGG 3 cut(s) 147, 200, 579
SduI GDGCHC 4 cut(s) 57, 157, 385, 1108
SfaNI GCATC 5 cut(s) 109, 325, 603, 1099, 1212
SfcI CTRYAG 2 cut(s) 411, 450
Sfr274I CTCGAG 1 cut(s) 56
SfuI TTCGAA 1 cut(s) 1119
SinI GGWCC 1 cut(s) 789
SlaI CTCGAG 1 cut(s) 56
SmiMI CAYNNNNRTG 2 cut(s) 437, 995
SmlI CTYRAG 4 cut(s) 56, 81, 467, 1035
SmoI CTYRAG 4 cut(s) 56, 81, 467, 1035
SphI GCATGC 1 cut(s) 607
Sse9I AATT 8 cut(s) 110, 473, 622, 941, 1022, 1169, 1228, 1246
SsiI CCGC 3 cut(s) 61, 86, 531
SspMI CTAG 5 cut(s) 126, 435, 819, 930, 1101
SstI GAGCTC 1 cut(s) 57
StyD4I CCNGG 3 cut(s) 145, 198, 577
TaaI ACNGT 3 cut(s) 404, 926, 1072
TaiI ACGT 3 cut(s) 40, 223, 694
TasI AATT 8 cut(s) 110, 473, 622, 941, 1022, 1169, 1228, 1246
TatI WGTACW 1 cut(s) 255
TauI GCSGC 1 cut(s) 89
TfiI GAWTC 4 cut(s) 64, 1054, 1097, 1144
Tru1I TTAA 2 cut(s) 684, 939
Tru9I TTAA 2 cut(s) 684, 939
TscAI CASTG 1 cut(s) 346
TseFI GTSAC 1 cut(s) 920
TseI GCWGC 3 cut(s) 89, 407, 410
Tsp45I GTSAC 1 cut(s) 920
TspDTI ATGAA 3 cut(s) 974, 1067, 1147
TspRI CASTG 1 cut(s) 346
VpaK11BI GGWCC 1 cut(s) 789
XapI RAATTY 3 cut(s) 473, 1022, 1169
XbaI TCTAGA 1 cut(s) 1100
XceI RCATGY 2 cut(s) 275, 607
XcmI CCANNNNNNNNNTGG 1 cut(s) 346
XhoI CTCGAG 1 cut(s) 56
XmiI GTMKAC 2 cut(s) 481, 746
XmnI GAANNNNTTC 1 cut(s) 951
XspI CTAG 5 cut(s) 126, 435, 819, 930, 1101
Zsp2I ATGCAT 1 cut(s) 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.