Rmu_sc0013809.1_g000011

Aminotransferase class-V

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013809.1
OG0005210
Physical Location & Seq
Reverse (-)
46092 .. 46592
501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013809.1_g000011.1.cds

Sequence Viewer

Length: 501 bp
atggcctcctcccccgaccacaaccacaccctgaacggcgattccaacacccacgcctccaaaaagcccaaactctccttcatcgccccctccgaaatcgccgccgaattctcccaccacgaccccgccgtcgcccgaatcaacaacggcagcttcgggtcctgccccgactccgtcctccaggcccagcgccgctggcagcgcaagtacctctcccagcccgatcacttctacttcaaccccctccaagccggcatcctccacttccgcaccctcatcagggacctcatcaacgccgaccacgtcgacgaggtctccatcgtcgacaacgccacccccgccgccgccatcgtcctccagcaggccgcctggggcttctccgagagcaagttcgagcaggacgacgtcgtcgtcatgctccactactcctacggcgccgtcaagaagtcgattgaggcctgcgtcactcgcgccggcgggcacccttgtcgtttcctttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 map00270
Pfam Domains
Protein Families
Aminotran_5

Protein Analysis

166

Amino Acids

18.37

Weight (kDa)

6.53

Isoelectric Point (pI)

47.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 128, 407, 410
AatII GACGTC 1 cut(s) 408
AccB1I GGYRCC 2 cut(s) 434, 480
AccI GTMKAC 2 cut(s) 306, 324
AccII CGCG 1 cut(s) 471
AciI CCGC 9 cut(s) 102, 126, 193, 268, 339, 342, 345, 366, 477
AcsI RAATTY 1 cut(s) 107
AcyI GRCGYC 2 cut(s) 405, 435
AfaI GTAC 1 cut(s) 209
AfiI CCNNNNNNNGG 3 cut(s) 279, 280, 361
AgsI TTSAA 1 cut(s) 238
AjiI CACGTC 1 cut(s) 304
AjnI CCWGG 2 cut(s) 180, 368
AjuI GAANNNNNNNTTGG 2 cut(s) 62, 94
AloI GAACNNNNNNTCC 2 cut(s) 26, 58
AluBI AGCT 1 cut(s) 153
AluI AGCT 1 cut(s) 153
Alw26I GTCTC 1 cut(s) 319
AoxI GGCC 4 cut(s) 3, 183, 363, 456
ApeKI GCWGC 2 cut(s) 150, 199
ApoI RAATTY 1 cut(s) 107
AspLEI GCGC 4 cut(s) 192, 204, 437, 473
AspS9I GGNCC 3 cut(s) 159, 184, 283
AvaII GGWCC 2 cut(s) 159, 283
BaeGI GKGCMC 1 cut(s) 483
BanI GGYRCC 2 cut(s) 434, 480
BbvI GCAGC 2 cut(s) 162, 211
BccI CCATC 2 cut(s) 326, 356
BceAI ACGGC 5 cut(s) 52, 113, 163, 422, 448
BcgI CGANNNNNNTGC 1 cut(s) 470
BciT130I CCWGG 2 cut(s) 182, 370
BcoDI GTCTC 1 cut(s) 319
BfoI RGCGCY 2 cut(s) 193, 438
BisI GCNGC 7 cut(s) 102, 151, 193, 200, 342, 345, 366
BlsI GCNGC 7 cut(s) 103, 152, 194, 201, 343, 346, 367
Bme1390I CCNGG 2 cut(s) 182, 370
Bme18I GGWCC 2 cut(s) 159, 283
BmgBI CACGTC 1 cut(s) 304
BmgT120I GGNCC 3 cut(s) 159, 184, 283
BmiI GGNNCC 4 cut(s) 160, 284, 436, 482
BmrFI CCNGG 2 cut(s) 182, 370
BmsI GCATC 1 cut(s) 264
BpmI CTGGAG 2 cut(s) 164, 341
BsaHI GRCGYC 2 cut(s) 405, 435
BsaI GGTCTC 1 cut(s) 319
BsaJI CCNNGG 1 cut(s) 369
BsaXI ACNNNNNCTCC 2 cut(s) 299, 329
Bsc4I CCNNNNNNNGG 3 cut(s) 279, 280, 361
Bse118I RCCGGY 2 cut(s) 251, 473
BseBI CCWGG 2 cut(s) 182, 370
BseDI CCNNGG 1 cut(s) 369
BseGI GGATG 1 cut(s) 255
BseLI CCNNNNNNNGG 3 cut(s) 279, 280, 361
BseSI GKGCMC 1 cut(s) 483
BseXI GCAGC 2 cut(s) 162, 211
BseYI CCCAGC 2 cut(s) 186, 216
Bsh1236I CGCG 1 cut(s) 471
BshFI GGCC 4 cut(s) 5, 185, 365, 458
BshNI GGYRCC 2 cut(s) 434, 480
BsiSI CCGG 2 cut(s) 252, 474
BslFI GGGAC 1 cut(s) 296
BslI CCNNNNNNNGG 3 cut(s) 279, 280, 361
BsmAI GTCTC 1 cut(s) 319
BsmFI GGGAC 1 cut(s) 296
BsnI GGCC 4 cut(s) 5, 185, 365, 458
Bso31I GGTCTC 1 cut(s) 319
Bsp1286I GDGCHC 1 cut(s) 483
Bsp143I GATC 1 cut(s) 223
BspACI CCGC 9 cut(s) 102, 126, 193, 268, 339, 342, 345, 366, 477
BspANI GGCC 4 cut(s) 5, 185, 365, 458
BspFNI CGCG 1 cut(s) 471
BspLI GGNNCC 4 cut(s) 160, 284, 436, 482
BspT107I GGYRCC 2 cut(s) 434, 480
BspTNI GGTCTC 1 cut(s) 319
BsrFI RCCGGY 2 cut(s) 251, 473
BssAI RCCGGY 2 cut(s) 251, 473
BssECI CCNNGG 1 cut(s) 369
BssMI GATC 1 cut(s) 223
BssNI GRCGYC 2 cut(s) 405, 435
Bst2UI CCWGG 2 cut(s) 182, 370
BstACI GRCGYC 2 cut(s) 405, 435
BstC8I GCNNGC 6 cut(s) 197, 253, 363, 460, 475, 479
BstENI CCTNNNNNAGG 1 cut(s) 359
BstF5I GGATG 1 cut(s) 255
BstFNI CGCG 1 cut(s) 471
BstH2I RGCGCY 2 cut(s) 193, 438
BstHHI GCGC 4 cut(s) 192, 204, 437, 473
BstKTI GATC 1 cut(s) 226
BstMAI GTCTC 1 cut(s) 319
BstMBI GATC 1 cut(s) 223
BstMWI GCNNNNNNNGC 4 cut(s) 196, 201, 338, 468
BstNI CCWGG 2 cut(s) 182, 370
BstSCI CCNGG 2 cut(s) 180, 368
BstSLI GKGCMC 1 cut(s) 483
BstUI CGCG 1 cut(s) 471
BstV1I GCAGC 2 cut(s) 162, 211
BsuRI GGCC 4 cut(s) 5, 185, 365, 458
BtgZI GCGATG 1 cut(s) 67
BtrI CACGTC 1 cut(s) 304
BtsCI GGATG 1 cut(s) 255
Cac8I GCNNGC 6 cut(s) 197, 253, 363, 460, 475, 479
CfoI GCGC 4 cut(s) 192, 204, 437, 473
Cfr10I RCCGGY 2 cut(s) 251, 473
Cfr13I GGNCC 3 cut(s) 159, 184, 283
CseI GACGC 1 cut(s) 451
Csp6I GTAC 1 cut(s) 208
CviAII CATG 1 cut(s) 415
CviJI RGCY 9 cut(s) 5, 67, 153, 185, 220, 251, 365, 375, 458
CviKI_1 RGCY 9 cut(s) 5, 67, 153, 185, 220, 251, 365, 375, 458
CviQI GTAC 1 cut(s) 208
DinI GGCGCC 1 cut(s) 436
DpnI GATC 1 cut(s) 225
DpnII GATC 1 cut(s) 223
DrdI GACNNNNNNGTC 3 cut(s) 128, 407, 410
DseDI GACNNNNNNGTC 3 cut(s) 128, 407, 410
Eco147I AGGCCT 1 cut(s) 458
Eco31I GGTCTC 1 cut(s) 319
Eco47I GGWCC 2 cut(s) 159, 283
EcoNI CCTNNNNNAGG 1 cut(s) 359
EcoO109I RGGNCCY 2 cut(s) 159, 283
EcoRI GAATTC 1 cut(s) 107
EcoRII CCWGG 2 cut(s) 180, 368
EgeI GGCGCC 1 cut(s) 436
EheI GGCGCC 1 cut(s) 436
FaeI CATG 1 cut(s) 418
FaiI YATR 1 cut(s) 416
FaqI GGGAC 1 cut(s) 296
FatI CATG 1 cut(s) 414
FauI CCCGC 3 cut(s) 133, 346, 470
FblI GTMKAC 2 cut(s) 306, 324
Fnu4HI GCNGC 7 cut(s) 102, 151, 193, 200, 342, 345, 366
FokI GGATG 1 cut(s) 242
Fsp4HI GCNGC 7 cut(s) 102, 151, 193, 200, 342, 345, 366
GlaI GCGC 4 cut(s) 191, 203, 436, 472
GluI GCNGC 7 cut(s) 102, 151, 193, 200, 342, 345, 366
GsaI CCCAGC 2 cut(s) 190, 220
GsuI CTGGAG 2 cut(s) 164, 341
HaeII RGCGCY 2 cut(s) 193, 438
HaeIII GGCC 4 cut(s) 5, 185, 365, 458
HapII CCGG 2 cut(s) 252, 474
HgaI GACGC 1 cut(s) 451
HhaI GCGC 4 cut(s) 192, 204, 437, 473
Hin1I GRCGYC 2 cut(s) 405, 435
Hin1II CATG 1 cut(s) 418
Hin6I GCGC 4 cut(s) 190, 202, 435, 471
HinP1I GCGC 4 cut(s) 190, 202, 435, 471
HincII GTYRAC 2 cut(s) 307, 325
HindII GTYRAC 2 cut(s) 307, 325
HinfI GANTC 3 cut(s) 41, 138, 170
HpaII CCGG 2 cut(s) 252, 474
Hpy166II GTNNAC 2 cut(s) 307, 325
Hpy188I TCNGA 2 cut(s) 94, 382
Hpy188III TCNNGA 1 cut(s) 442
Hpy8I GTNNAC 2 cut(s) 307, 325
Hpy99I CGWCG 7 cut(s) 134, 308, 311, 326, 407, 410, 413
HpyAV CCTTC 1 cut(s) 88
HpyCH4IV ACGT 2 cut(s) 303, 405
HpyF10VI GCNNNNNNNGC 4 cut(s) 196, 201, 338, 468
HpySE526I ACGT 2 cut(s) 303, 405
Hsp92I GRCGYC 2 cut(s) 405, 435
Hsp92II CATG 1 cut(s) 418
HspAI GCGC 4 cut(s) 190, 202, 435, 471
KasI GGCGCC 1 cut(s) 434
KroI GCCGGC 2 cut(s) 251, 473
KroNI GCCGGC 2 cut(s) 253, 475
Kzo9I GATC 1 cut(s) 223
LmnI GCTCC 1 cut(s) 423
Lsp1109I GCAGC 2 cut(s) 162, 211
LweI GCATC 1 cut(s) 264
MaeII ACGT 2 cut(s) 303, 405
MaeIII GTNAC 1 cut(s) 463
MalI GATC 1 cut(s) 225
MboI GATC 1 cut(s) 223
MhlI GDGCHC 1 cut(s) 483
MluCI AATT 1 cut(s) 107
Mly113I GGCGCC 1 cut(s) 435
MlyI GAGTC 1 cut(s) 164
MmeI TCCRAC 1 cut(s) 69
MreI CGCCGGCG 1 cut(s) 473
MroNI GCCGGC 2 cut(s) 251, 473
MspA1I CMGCKG 1 cut(s) 195
MspI CCGG 2 cut(s) 252, 474
MspR9I CCNGG 2 cut(s) 182, 370
MvaI CCWGG 2 cut(s) 182, 370
MvnI CGCG 1 cut(s) 471
MwoI GCNNNNNNNGC 4 cut(s) 196, 201, 338, 468
NaeI GCCGGC 2 cut(s) 253, 475
NarI GGCGCC 1 cut(s) 435
NdeII GATC 1 cut(s) 223
NgoMIV GCCGGC 2 cut(s) 251, 473
NlaIII CATG 1 cut(s) 418
NlaIV GGNNCC 4 cut(s) 160, 284, 436, 482
NmuCI GTSAC 1 cut(s) 463
PceI AGGCCT 1 cut(s) 458
PcsI WCGNNNNNNNCGW 5 cut(s) 90, 126, 300, 399, 408
PdiI GCCGGC 2 cut(s) 253, 475
PfeI GAWTC 2 cut(s) 41, 138
PflFI GACNNNGTC 5 cut(s) 173, 302, 311, 404, 407
PkrI GCNGC 7 cut(s) 103, 152, 194, 201, 343, 346, 367
PleI GAGTC 1 cut(s) 164
PluTI GGCGCC 1 cut(s) 438
PpsI GAGTC 1 cut(s) 164
PpuMI RGGWCCY 2 cut(s) 159, 283
Psp5II RGGWCCY 2 cut(s) 159, 283
Psp6I CCWGG 2 cut(s) 180, 368
PspFI CCCAGC 2 cut(s) 186, 216
PspGI CCWGG 2 cut(s) 180, 368
PspN4I GGNNCC 4 cut(s) 160, 284, 436, 482
PspPI GGNCC 3 cut(s) 159, 184, 283
PspPPI RGGWCCY 2 cut(s) 159, 283
PsyI GACNNNGTC 5 cut(s) 173, 302, 311, 404, 407
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
SalI GTCGAC 2 cut(s) 305, 323
SatI GCNGC 7 cut(s) 102, 151, 193, 200, 342, 345, 366
Sau3AI GATC 1 cut(s) 223
Sau96I GGNCC 3 cut(s) 159, 184, 283
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 2 cut(s) 182, 370
SduI GDGCHC 1 cut(s) 483
SetI ASST 6 cut(s) 155, 213, 288, 306, 315, 408
SfaNI GCATC 1 cut(s) 264
SfoI GGCGCC 1 cut(s) 436
SgrAI CRCCGGYG 1 cut(s) 473
SgrDI CGTCGACG 1 cut(s) 305
SinI GGWCC 2 cut(s) 159, 283
Sse9I AATT 1 cut(s) 107
SseBI AGGCCT 1 cut(s) 458
SsiI CCGC 9 cut(s) 102, 126, 193, 268, 339, 342, 345, 366, 477
SspDI GGCGCC 1 cut(s) 434
StuI AGGCCT 1 cut(s) 458
StyD4I CCNGG 2 cut(s) 180, 368
TaiI ACGT 2 cut(s) 306, 408
TaqI TCGA 4 cut(s) 306, 324, 393, 449
TasI AATT 1 cut(s) 107
TauI GCSGC 5 cut(s) 104, 195, 344, 347, 368
TfiI GAWTC 2 cut(s) 41, 138
TseFI GTSAC 1 cut(s) 463
TseI GCWGC 2 cut(s) 150, 199
Tsp45I GTSAC 1 cut(s) 463
TspDTI ATGAA 1 cut(s) 70
TspGWI ACGGA 1 cut(s) 163
Tth111I GACNNNGTC 5 cut(s) 173, 302, 311, 404, 407
VpaK11BI GGWCC 2 cut(s) 159, 283
XagI CCTNNNNNAGG 1 cut(s) 359
XapI RAATTY 1 cut(s) 107
XmiI GTMKAC 2 cut(s) 306, 324
ZraI GACGTC 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.